rna-TanjilR_04325
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_04325 vs. DB:Swiss
Match: VPS41_SOLLC (Vacuolar protein sorting-associated protein 41 homolog OS=Solanum lycopersicum OX=4081 GN=VPS41 PE=2 SV=1) HSP 1 Score: 170.629 bits (431), Expect = 4.608e-71 Identity = 78/92 (84.78%), Postives = 82/92 (89.13%), Query Frame = 2 Query: 914 QVKEFHAHVAVVNDLSFDIAGEYIGSCSDDGSVVINSLFSDEKMRFEYHRPMKAIALDPDYARNSSRRFVAGGLAGNLYLNSKKWLGYRDQV 1189
QVKEF AH A VNDL FD GEY+GSCSDDGSVVINSLF+DE+M+FEYHRPMKAIALDPDYAR SSRRFV GGLAG LYLN KKWLGYRDQV
Sbjct: 84 QVKEFAAHTAAVNDLCFDTDGEYVGSCSDDGSVVINSLFTDERMKFEYHRPMKAIALDPDYARTSSRRFVTGGLAGQLYLNVKKWLGYRDQV 175 HSP 2 Score: 124.02 bits (310), Expect = 4.608e-71 Identity = 55/66 (83.33%), Postives = 59/66 (89.39%), Query Frame = 3 Query: 1281 KVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIERPRGSPRPELLLPHLVWQVSQLF 1478
+VLHSGEGPIHAVKWRTSLVAWAND GVKVYD +NDQR+TFIERPRG PRPELLLPH+VWQ L
Sbjct: 174 QVLHSGEGPIHAVKWRTSLVAWANDTGVKVYDASNDQRITFIERPRGIPRPELLLPHIVWQDDSLL 239 HSP 3 Score: 151.754 bits (382), Expect = 5.840e-43 Identity = 79/153 (51.63%), Postives = 103/153 (67.32%), Query Frame = 2 Query: 10007 ADCVNLLIKYYKEAKHGIYLTNEEDEPRSKRSNTHASQIFDKTPSLRIMEAKSKTRGGGRCCICFDPFSIQNISVIVFFCCHAYHTTCLMDSSYTNSSKKEI------ETTYNGFVDD---------NSHXXXXXXXAGDHRMRCILCTTAAS 10420
ADCVNLL+KYYKEAK G+ L++E D+ S+R S + ++T SL+ +E KSKTRGGGRCCICFDPFSI N+S+I FFCCHAYHTTCLM+SS + KKE T+Y+ + + +++E+ +G MRCILCTTAA
Sbjct: 808 ADCVNLLVKYYKEAKRGVCLSDEVDDVSSRRGEKSVSHLGERTMSLKSVEVKSKTRGGGRCCICFDPFSILNVSIIAFFCCHAYHTTCLMESSISVGGKKEAGVAAQRTTSYDEYPNGVNDDYEDEDEEEEEEEDATSGALPMRCILCTTAAG 960 HSP 4 Score: 48.9062 bits (115), Expect = 5.840e-43 Identity = 21/23 (91.30%), Postives = 22/23 (95.65%), Query Frame = 1 Query: 9850 VKIITDYRTETSLRHGCNDILKV 9918
VKI+TDYRTETSLRHGCNDILK
Sbjct: 786 VKIVTDYRTETSLRHGCNDILKA 808 HSP 5 Score: 102.834 bits (255), Expect = 1.516e-37 Identity = 56/98 (57.14%), Postives = 60/98 (61.22%), Query Frame = 3 Query: 4752 TNASFHKDLLSTVKSWPSVIYSVLPVISAIEPQLNTSSMTDPLKEVSXXXXXXXXXXXXXXXXS*YLY*CAAFLCQTLAELYVIDGQHEKAFSLYADV 5045
TN SFHKDLLSTVKSWP IYS PV SAIEPQ+NTSSMTDPLKE LAELYVIDGQH+KAF+LYAD+
Sbjct: 504 TNPSFHKDLLSTVKSWPPRIYSTTPVFSAIEPQINTSSMTDPLKE-------------------------------ALAELYVIDGQHDKAFALYADL 570 HSP 6 Score: 79.7221 bits (195), Expect = 1.516e-37 Identity = 32/38 (84.21%), Postives = 37/38 (97.37%), Query Frame = 2 Query: 4523 ASFNRWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVS 4636
+++ RWVFHFAHLRQLPVLVPY+PTENPRLRDTAYEV+
Sbjct: 461 SAWERWVFHFAHLRQLPVLVPYIPTENPRLRDTAYEVA 498 HSP 7 Score: 142.124 bits (357), Expect = 3.160e-32 Identity = 70/95 (73.68%), Postives = 80/95 (84.21%), Query Frame = 2 Query: 1631 LMSFCILQDDTLLVIGWGTSVKIASIRTNRHHTANGTYRQVPLSGMTQVDILASFQTSYFISGIAPFGDTLVILAYIPG-EDGEKDFSSTAPSRQ 1912
L+ + QDD+LLVIGWGTSVKIA IRT + ANGTY+ + +S + QVDI+ASFQTSYFISGIAPFGD+LVILAYIPG EDGEKDFSST PSRQ
Sbjct: 227 LLPHIVWQDDSLLVIGWGTSVKIALIRTTQSKGANGTYKHMSMSSLNQVDIVASFQTSYFISGIAPFGDSLVILAYIPGEEDGEKDFSSTIPSRQ 321 HSP 8 Score: 97.0561 bits (240), Expect = 6.007e-32 Identity = 42/46 (91.30%), Postives = 45/46 (97.83%), Query Frame = 2 Query: 2588 QGNAQRPEVRIVTRNNDELSTDALPVHGFEHYKAKDYSLAHSPFSG 2725
QGNAQRPEVR+VT NNDEL+TDALPVHGFEHYKAKDYSLAH+PFSG
Sbjct: 321 QGNAQRPEVRVVTWNNDELATDALPVHGFEHYKAKDYSLAHAPFSG 366 HSP 9 Score: 66.6254 bits (161), Expect = 6.007e-32 Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 Query: 2815 GSSYAGGQWAAGDEPIYYIVSPKDVVIAKPR 2907
GSSYAGGQWAAGDEP+YYIVSPKDVVIAKPR
Sbjct: 366 GSSYAGGQWAAGDEPLYYIVSPKDVVIAKPR 396 HSP 10 Score: 107.071 bits (266), Expect = 2.105e-31 Identity = 54/108 (50.00%), Postives = 66/108 (61.11%), Query Frame = 3 Query: 8058 QAYEICIRRDLMREQVFLLGRMGNSKQALAVIINKLGDIEEVFYLIIFYYRWFLVSINFNVLNQNFGDFMLNLNANIFTQAVEFVTMQHDDELWEELIKQCLHKPEMV 8381
+AYEIC+++DL++EQVF+LGRMGN+KQALAVIIN+LGDIEE A+EFV+MQ DDELWEELI+Q HKPEMV
Sbjct: 684 KAYEICVKKDLLKEQVFILGRMGNAKQALAVIINRLGDIEE---------------------------------------AIEFVSMQQDDELWEELIQQSFHKPEMV 752 HSP 11 Score: 54.6842 bits (130), Expect = 2.105e-31 Identity = 25/27 (92.59%), Postives = 25/27 (92.59%), Query Frame = 1 Query: 7915 VELYADYDPKMLLPFLRSSQHYTLEKV 7995
VELYADYDPKMLL FLRSSQHYTLEK
Sbjct: 659 VELYADYDPKMLLTFLRSSQHYTLEKA 685 HSP 12 Score: 104.375 bits (259), Expect = 1.416e-20 Identity = 50/63 (79.37%), Postives = 52/63 (82.54%), Query Frame = 3 Query: 6411 DCKRAVPLLIQNRDLITPPEVVKQLLNANVKCDSRYFLHLYLHSLFEVNPHAGKDFHDMQVEF 6599
DCKRAV LLIQ RDLI P EVV QL+ A KCD RYFLHLYLHSLFEVN HAGKD+HDMQVE
Sbjct: 599 DCKRAVLLLIQQRDLIPPSEVVSQLIAARDKCDYRYFLHLYLHSLFEVNLHAGKDYHDMQVEL 661 HSP 13 Score: 95.1301 bits (235), Expect = 8.379e-18 Identity = 62/88 (70.45%), Postives = 76/88 (86.36%), Query Frame = 1 Query: 1 MAPFPSENGVDGXXXXXXXXXXXXXXXXXXXXXXXXXXPRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHDGVVYILDFLGNQV 264
M+P PSENG+ D +E +EEEED +EEE EE++++EPRLKYQRMG S+PSLL++DAA+CIAVAERMIALGTH G V+ILDFLGNQV
Sbjct: 1 MSPKPSENGI---DGDDERDEEEEDSEEEEAEEEEEDEPRLKYQRMGASVPSLLSADAATCIAVAERMIALGTHGGAVHILDFLGNQV 85 HSP 14 Score: 81.2629 bits (199), Expect = 1.648e-13 Identity = 38/51 (74.51%), Postives = 44/51 (86.27%), Query Frame = 3 Query: 4347 QVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERYQY------QIPLVV 4481
+VGSRYLDHLIVERKYAEAASLCPKLLRGSASAWER+ + Q+P++V
Sbjct: 430 EVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAHLRQLPVLV 480 HSP 15 Score: 73.1738 bits (178), Expect = 4.563e-11 Identity = 32/44 (72.73%), Postives = 37/44 (84.09%), Query Frame = 2 Query: 3683 RNLCILIIRDAEDHIAWLLQHGWHEKALAAVESGQGRSELLDEV 3814
+++ I RDAEDHI WLLQHGWHEKAL AVE+ QG+SELLDEV
Sbjct: 388 KDVVIAKPRDAEDHINWLLQHGWHEKALEAVEANQGQSELLDEV 431
BLAST of rna-TanjilR_04325 vs. DB:Swiss
Match: VPS41_ARATH (Vacuolar protein sorting-associated protein 41 homolog OS=Arabidopsis thaliana OX=3702 GN=VPS41 PE=1 SV=3) HSP 1 Score: 155.992 bits (393), Expect = 1.208e-65 Identity = 73/103 (70.87%), Postives = 87/103 (84.47%), Query Frame = 2 Query: 893 SYRVISL---QVKEFHAHVAVVNDLSFDIAGEYIGSCSDDGSVVINSLFSD-EKMRFEYHRPMKAIALDPDYARNSSRRFVAGGLAGNLYLNSKKWLGYRDQV 1189
+ R++ L QVKEF AH A VND++FD GEYIGSCSDDGSVVINSLF+D EKM+F+YHRPMKAI+LDPDY + S+RFVAGGLAG+LY+NSKKW G +DQV
Sbjct: 80 TVRILDLLGNQVKEFRAHTAPVNDINFDTEGEYIGSCSDDGSVVINSLFTDDEKMKFDYHRPMKAISLDPDYTKKQSKRFVAGGLAGHLYMNSKKWFGNKDQV 182 HSP 2 Score: 120.553 bits (301), Expect = 1.208e-65 Identity = 54/66 (81.82%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 1281 KVLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIERPRGSPRPELLLPHLVWQVSQLF 1478
+VLHSGEGPIH+VKWR SL+AWAND GVKVYDTA DQRVTFIE+PRGSPRPE LLPHLVWQ L
Sbjct: 181 QVLHSGEGPIHSVKWRGSLIAWANDVGVKVYDTAKDQRVTFIEKPRGSPRPEALLPHLVWQDDTLL 246 HSP 3 Score: 126.331 bits (316), Expect = 2.283e-35 Identity = 70/153 (45.75%), Postives = 105/153 (68.63%), Query Frame = 2 Query: 10010 DCVNLLIKYYKEAKHGIYLTNEEDEPRSKRSNTHAS-----QIFDKTPSLRIMEAKSKTRGGGRCCICFDPFSIQNISVIVFFCCHAYHTTCLMDSSYTNSSKKEI------ETTYNGFVDDNSHXXXXXXX-----AGDHRMRCILCTTAAS 10420
D VNLL+K + EA+ G+ L++E+D+ R+KR + + S + DK+ S+++ E KSKTRG RCC+CFDP SI+ +V+VFFCCHAYH TCLMD++++N++ K E +Y+ VD+ D++E+E+ G R+RCILCTTAA+
Sbjct: 824 DIVNLLVKCFNEARRGVCLSHEDDDSRAKREDNNRSSFSQRMVVDKSLSIKMTEVKSKTRGDTRCCMCFDPVSIRGDTVVVFFCCHAYHETCLMDAAFSNNNHKTTKGSSGYEYSYDNGVDEEEEDEEEDEDGDGDRPGRSRLRCILCTTAAA 976 HSP 4 Score: 48.9062 bits (115), Expect = 2.283e-35 Identity = 21/22 (95.45%), Postives = 22/22 (100.00%), Query Frame = 1 Query: 9850 VKIITDYRTETSLRHGCNDILK 9915
VKI+TDYRTETSLRHGCNDILK
Sbjct: 801 VKIVTDYRTETSLRHGCNDILK 822 HSP 5 Score: 95.5153 bits (236), Expect = 9.298e-34 Identity = 53/98 (54.08%), Postives = 59/98 (60.20%), Query Frame = 3 Query: 4752 TNASFHKDLLSTVKSWPSVIYSVLPVISAIEPQLNTSSMTDPLKEVSXXXXXXXXXXXXXXXXS*YLY*CAAFLCQTLAELYVIDGQHEKAFSLYADV 5045
TN S+HK+LLS VKSWP +YS L VISAIEPQLNTSSMTD LKE LAELYVIDGQ++KAFSLYAD+
Sbjct: 510 TNPSYHKELLSAVKSWPRSVYSALTVISAIEPQLNTSSMTDALKE-------------------------------ALAELYVIDGQYQKAFSLYADL 576 HSP 6 Score: 73.9442 bits (180), Expect = 9.298e-34 Identity = 29/38 (76.32%), Postives = 35/38 (92.11%), Query Frame = 2 Query: 4523 ASFNRWVFHFAHLRQLPVLVPYMPTENPRLRDTAYEVS 4636
+++ RWVFHFA LRQLPVLVPYMPT+NPRL+DT YEV+
Sbjct: 467 SAWERWVFHFAQLRQLPVLVPYMPTDNPRLKDTVYEVA 504 HSP 7 Score: 114.005 bits (284), Expect = 3.002e-32 Identity = 58/110 (52.73%), Postives = 69/110 (62.73%), Query Frame = 3 Query: 8058 QAYEICIRRDLMREQVFLLGRMGNSKQALAVIINKLGDIEEVFYLIIFYYRWFLVSINFNVLNQNFGDFMLNLNANIFTQAVEFVTMQHDDELWEELIKQCLHKPEMVYL 8387
+AYE+C+++D +REQVF+LGRMGN+KQALAVIINKLGDIEE AVEFV+MQHDD+LWEELIKQCL+KPEMV L
Sbjct: 699 KAYELCVKKDFLREQVFVLGRMGNAKQALAVIINKLGDIEE---------------------------------------AVEFVSMQHDDDLWEELIKQCLNKPEMVGL 769 HSP 8 Score: 50.8322 bits (120), Expect = 3.002e-32 Identity = 23/27 (85.19%), Postives = 24/27 (88.89%), Query Frame = 1 Query: 7915 VELYADYDPKMLLPFLRSSQHYTLEKV 7995
VELYA+YD KMLLPFLRSSQHY LEK
Sbjct: 674 VELYAEYDTKMLLPFLRSSQHYKLEKA 700 HSP 9 Score: 90.8929 bits (224), Expect = 3.281e-30 Identity = 39/46 (84.78%), Postives = 43/46 (93.48%), Query Frame = 2 Query: 2588 QGNAQRPEVRIVTRNNDELSTDALPVHGFEHYKAKDYSLAHSPFSG 2725
QGNAQRPE+RIV+ NNDEL+ DALPVHGFEHYKAKDYSLAH+PF G
Sbjct: 327 QGNAQRPEIRIVSWNNDELTMDALPVHGFEHYKAKDYSLAHAPFPG 372 HSP 10 Score: 66.6254 bits (161), Expect = 3.281e-30 Identity = 30/31 (96.77%), Postives = 31/31 (100.00%), Query Frame = 1 Query: 2815 GSSYAGGQWAAGDEPIYYIVSPKDVVIAKPR 2907
GSSYAGGQWAAGDEP+YYIVSPKDVVIAKPR
Sbjct: 372 GSSYAGGQWAAGDEPLYYIVSPKDVVIAKPR 402 HSP 11 Score: 132.109 bits (331), Expect = 4.795e-29 Identity = 67/96 (69.79%), Postives = 81/96 (84.38%), Query Frame = 2 Query: 1631 LMSFCILQDDTLLVIGWGTSVKIASIRTNRHHTANGTYRQVPLSGMTQVDILASFQTSYFISGIAPFGDTLVILAYIPGE-DGEKDFSSTAP-SRQ 1912
L+ + QDDTLLVIGWGTSVKIASI++++ T GT+RQ+ +S +TQVDI+ASFQTSY+ISGIAPFGD+LVILAYIP E DGEK+FSST SRQ
Sbjct: 234 LLPHLVWQDDTLLVIGWGTSVKIASIKSDQQQT--GTFRQIQMSSLTQVDIVASFQTSYYISGIAPFGDSLVILAYIPIEGDGEKEFSSTTTLSRQ 327 HSP 12 Score: 92.0485 bits (227), Expect = 7.309e-17 Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 1 Query: 115 PRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHDGVVYILDFLGNQV 264
PRLKYQRMGG++P+LL++DAASCIAVA RMIALGTHDG V ILD LGNQV
Sbjct: 42 PRLKYQRMGGNVPALLSNDAASCIAVAARMIALGTHDGTVRILDLLGNQV 91 HSP 13 Score: 77.0258 bits (188), Expect = 2.929e-12 Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 3 Query: 4347 QVGSRYLDHLIVERKYAEAASLCPKLLRGSASAWERYQY------QIPLVV 4481
+VG+ YLDHLIVERKYAEAASLCPKLLRGSASAWER+ + Q+P++V
Sbjct: 436 KVGAGYLDHLIVERKYAEAASLCPKLLRGSASAWERWVFHFAQLRQLPVLV 486 HSP 14 Score: 75.8702 bits (185), Expect = 6.268e-12 Identity = 46/72 (63.89%), Postives = 50/72 (69.44%), Query Frame = 3 Query: 6411 DCKRAVPLLIQNRDLITPPEVVKQLLNANV---------KCDSRYFLHLYLHSLFEVNPHAGKDFHDMQVEF 6599
DCKRA L IQNRDLI P EVV QLL A KCDSRY+L+LYLH+LFEV+ GKDFHDMQVE
Sbjct: 605 DCKRATVLFIQNRDLIPPSEVVPQLLKAGKNPQVLKAGKKCDSRYYLYLYLHALFEVSHDTGKDFHDMQVEL 676 HSP 15 Score: 67.0106 bits (162), Expect = 3.148e-9 Identity = 29/44 (65.91%), Postives = 38/44 (86.36%), Query Frame = 2 Query: 3683 RNLCILIIRDAEDHIAWLLQHGWHEKALAAVESGQGRSELLDEV 3814
+++ I RDAEDHI WLLQHG+HEKALAAVE+ +GR+EL+D+V
Sbjct: 394 KDVVIAKPRDAEDHINWLLQHGFHEKALAAVEASEGRTELIDKV 437 HSP 16 Score: 63.1586 bits (152), Expect = 5.421e-8 Identity = 26/29 (89.66%), Postives = 28/29 (96.55%), Query Frame = 2 Query: 9467 VGILLEHTVGNLDPLYIVNKVPNGMEIPR 9553
VG+LLEHTVGNLDPLYIVN VPNG+EIPR
Sbjct: 767 VGLLLEHTVGNLDPLYIVNMVPNGLEIPR 795
BLAST of rna-TanjilR_04325 vs. DB:Swiss
Match: VPS41_HUMAN (Vacuolar protein sorting-associated protein 41 homolog OS=Homo sapiens OX=9606 GN=VPS41 PE=1 SV=3) HSP 1 Score: 65.0846 bits (157), Expect = 7.839e-21 Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 3 Query: 1284 VLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIERPRGSPRPELLLPHLVWQ 1463
VLH GEG I +VKWR L+AWAN+ GVK++D + QR+T + R S RP++ L W+
Sbjct: 166 VLHEGEGNIRSVKWRGHLIAWANNMGVKIFDIISKQRITNVPRDDISLRPDMYPCSLCWK 225 HSP 2 Score: 60.8474 bits (146), Expect = 7.839e-21 Identity = 29/85 (34.12%), Postives = 49/85 (57.65%), Query Frame = 2 Query: 917 VKEFHAHVAVVNDLSFDIAGEYIGSCSDDGSVVINSLFSDEKMRFEYHRPMKAIALDPDYARNSSRRFVAGGLAGNLYLNSKKWL 1171
++F +N +S D +GE++G CS+DG V + L+S E+ + P+K IA+ P + R+S ++FV GG L L + W+
Sbjct: 77 TQKFDVSPVKINQISLDESGEHMGVCSEDGKVQVFGLYSGEEFHETFDCPIKIIAVHPHFVRSSCKQFVTGG--KKLLLFERSWM 159 HSP 3 Score: 60.8474 bits (146), Expect = 2.353e-7 Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 1637 SFCILQDDTLLVIGWGTSVKIASIRTNRHHTANGTYRQVPLSGMTQVDILASFQTSYFISGIAPFGDTLVILAYIP--GEDGEKDF 1888
S C +D+ L+IGWGTSVK+ S++ RH + R +P V+I++ F+T ++ISG+AP D LV+L+Y+ E E+++
Sbjct: 221 SLC-WKDNVTLIIGWGTSVKVCSVK-ERHASE---MRDLP---SRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEISEKTEREY 298 HSP 4 Score: 59.3066 bits (142), Expect = 7.435e-7 Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 115 PRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHDGVVYILDFLGN 258
P+LKY+R+ + +L DAASC+ V ++ +ALGTH G VY+LD GN
Sbjct: 28 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGN 75
BLAST of rna-TanjilR_04325 vs. DB:Swiss
Match: VPS41_MOUSE (Vacuolar protein sorting-associated protein 41 homolog OS=Mus musculus OX=10090 GN=Vps41 PE=1 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.872e-20 Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 3 Query: 1284 VLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIERPRGSPRPELLLPHLVWQ 1463
VLH GEG I +VKWR L+AWAN+ GVKV+D + QR++ + R S RP++ L W+
Sbjct: 165 VLHEGEGNIRSVKWRGHLIAWANNMGVKVFDITSKQRISNVPRDDISLRPDMYPCSLCWK 224 HSP 2 Score: 60.077 bits (144), Expect = 1.872e-20 Identity = 28/85 (32.94%), Postives = 49/85 (57.65%), Query Frame = 2 Query: 917 VKEFHAHVAVVNDLSFDIAGEYIGSCSDDGSVVINSLFSDEKMRFEYHRPMKAIALDPDYARNSSRRFVAGGLAGNLYLNSKKWL 1171
++F +N +S D +GE++G CS+DG + + L+S E+ + P+K IA+ P + R+S ++FV GG L L + W+
Sbjct: 76 TQKFDVSPVKINQISLDDSGEHMGVCSEDGKLQVFGLYSGEEFHETFDCPIKIIAVHPQFVRSSCKQFVTGG--KKLLLFERTWM 158 HSP 3 Score: 60.8474 bits (146), Expect = 2.332e-7 Identity = 33/86 (38.37%), Postives = 54/86 (62.79%), Query Frame = 2 Query: 1637 SFCILQDDTLLVIGWGTSVKIASIRTNRHHTANGTYRQVPLSGMTQVDILASFQTSYFISGIAPFGDTLVILAYIP--GEDGEKDF 1888
S C +D+ L+IGWGTS+KI S++ RH + R +P V+I++ F+T ++ISG+AP D LV+L+Y+ E E+++
Sbjct: 220 SLC-WKDNVTLIIGWGTSIKICSVK-ERHASE---MRDLP---SRYVEIVSQFETEFYISGLAPLCDQLVVLSYVKEVSEKTEREY 297 HSP 4 Score: 59.3066 bits (142), Expect = 7.623e-7 Identity = 24/48 (50.00%), Postives = 34/48 (70.83%), Query Frame = 1 Query: 115 PRLKYQRMGGSIPSLLASDAASCIAVAERMIALGTHDGVVYILDFLGN 258
P+LKY+R+ + +L DAASC+ V ++ +ALGTH G VY+LD GN
Sbjct: 27 PKLKYERLSNGVTEILQKDAASCMTVHDKFLALGTHYGKVYLLDVQGN 74
BLAST of rna-TanjilR_04325 vs. DB:Swiss
Match: VPS41_SCHPO (Vacuolar protein sorting-associated protein 41 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=vps41 PE=3 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 7.255e-20 Identity = 35/87 (40.23%), Postives = 57/87 (65.52%), Query Frame = 2 Query: 935 HVAVVNDLSFDIAGEYIGSCSDDGSVVINSLFSDEKMRFEYHRPMKAIALDPDYARNSSRRFVAGGLAGNLYLNSKKWLGYRDQVCK 1195
H A V DLS D+ E + SCS DG ++I+++ + E ++ RP+ ++A+DP Y+ SSR+ ++GG AG + L+ K WLG +D V +
Sbjct: 79 HSASVVDLSVDLESENLASCSMDGKMIISNITTRETTVHDFKRPLLSVAIDPYYSTRSSRQVLSGGRAGKVVLSEKGWLGNKDTVLQ 165 HSP 2 Score: 45.4394 bits (106), Expect = 7.255e-20 Identity = 20/60 (33.33%), Postives = 33/60 (55.00%), Query Frame = 3 Query: 1284 VLHSGEGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIERPRGSPRPELLLPHLVWQ 1463
VL + G ++ + W T+ +AWA+D G+ VY T + + +E P+ P E+ L WQ
Sbjct: 163 VLQADCGAVYKISWYTTYIAWASDLGITVYSTEFGKVLGRLEPPKRLPNDEIFPYQLFWQ 222
BLAST of rna-TanjilR_04325 vs. DB:Swiss
Match: VPS41_YEAST (Vacuolar protein sorting-associated protein 41 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=VPS41 PE=1 SV=2) HSP 1 Score: 55.4546 bits (132), Expect = 5.970e-8 Identity = 26/76 (34.21%), Postives = 50/76 (65.79%), Query Frame = 2 Query: 956 LSFDIAGEYIGSCSDDGSVVINSLFSDEKM-RFEYHRPMKAIALDPDYARNSSRRFVAGGLAGNLYLNSKKWLGYR 1180
L + G+Y + S DG+V+I S+ + + ++++ RP+ ++AL ++ +SR FV+GG+AG++ L+ + WLG R
Sbjct: 159 LCINTDGKYFATGSIDGTVIIGSMDDPQNITQYDFKRPINSVALHSNFQ--ASRMFVSGGMAGDVVLSQRNWLGNR 232 HSP 2 Score: 26.9498 bits (58), Expect = 5.970e-8 Identity = 15/57 (26.32%), Postives = 24/57 (42.11%), Query Frame = 3 Query: 1299 EGPIHAVKWRTSLVAWANDAGVKVYDTANDQRVTFIERPR-----GSPRPELLLPHL 1454
+GPI + L+ W +D G+ D ++ I P RP+L PH+
Sbjct: 255 KGPIMGIYTMGDLILWMDDDGITFCDVPTRSQLLNIPFPSRIFNVQDVRPDLFRPHV 311 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_04325 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 6 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_04325_La_Tanjil_v1.0 ID=rna-TanjilR_04325_La_Tanjil_v1.0; Name=rna-TanjilR_04325; organism=Lupinus angustifolius; type=mRNA; length=10423bpback to top protein sequence of rna-TanjilR_04325_La_Tanjil_v1.0 >rna-TanjilR_04325_La_Tanjil_v1.0 ID=rna-TanjilR_04325_La_Tanjil_v1.0; Name=rna-TanjilR_04325_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=947bpback to top mRNA from alignment at Chr_LG03-CM007363.1:710264..720686- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_04325_La_Tanjil_v1.0 ID=rna-TanjilR_04325_La_Tanjil_v1.0; Name=rna-TanjilR_04325; organism=Lupinus angustifolius; type=mRNA; length=10423bp; location=Sequence derived from: Chr_LG03-CM007363.1:710264..720686- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG03-CM007363.1:710264..720686- >rna-TanjilR_04325_La_Tanjil_v1.0 ID=rna-TanjilR_04325_La_Tanjil_v1.0; Name=rna-TanjilR_04325; organism=Lupinus angustifolius; type=CDS; length=2844bp; location=Sequence derived from: Chr_LG03-CM007363.1:710264..720686- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|