rna-TanjilR_10715

Transcript Overview
Namerna-TanjilR_10715
Unique Namerna-TanjilR_10715_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length498
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG05-CM007365.1supercontigChr_LG05-CM007365.1:23915669..23916166 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL435Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL562Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR572Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1074Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1143Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0892Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0900Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1062Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0735Pisum sativum Cameor genome v1aPisum sativum
anpvR1001Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1042Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0870Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0911Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0990Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0995Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0840Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0865Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0884Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0892Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0907Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0916Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0845Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0873Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0825Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0867Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0972Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0986Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0997Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1018Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0812Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0827Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0835Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0966Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0974Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0849Cicer arietinum
ancarR0864Cicer arietinum
ancarR0872Cicer arietinum
anccaR0877Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0884Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0889Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0965Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1002Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1022Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0913Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0946Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0947Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR1005Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0996Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1031Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1020Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1033Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0835Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0874Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-KK1_003230Cajanus cajan Asha genome v1.0Cajanus cajan
Vum_07G00652.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Cc_v2.0_07999.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat3g027400.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_09629.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun01g182500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.07G081800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.5g124800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vigun01g182500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va03G082140.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Va02G004120.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Ca_14467Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058930404.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigan.08G347700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
jg44071.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
XM_058873675.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Tiffany.R1.3g027080.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Vfaba.Hedin2.R1.3g035040.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
jg31594.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr07.1735Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
LR48_mrnaVigan03g293500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigan.04G404100.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_004494861.1Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
jg7460.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_00880Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Phvul.007G265700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cr_05471.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.04G231600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Ca_07929.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
LR48_mrnaVigan02g017800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigun07g019500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058884754.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_08G02591.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.001G198100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-XM_004487377.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
rna-XM_014655856.1Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun07g019500.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Cc_v2.0_03140.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Hedin2.R1.5g155920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.08G238700.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
rna-XM_004497569.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_00286Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_19814Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_28604Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_10715gene-TanjilG_10715_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_10715rna-TanjilR_10715_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_10715_La_Tanjil_v1.0rna-TanjilR_10715_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_10715_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:23915669..23916166rna-TanjilR_10715_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:23915669..23916166Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_10715_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:23915669..23916166rna-TanjilR_10715_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:23915669..23916166Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_10715 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_10715_La_Tanjil_v1.0 ID=rna-TanjilR_10715_La_Tanjil_v1.0; Name=rna-TanjilR_10715; organism=Lupinus angustifolius; type=mRNA; length=498bp
ATGTCCAACAAGATCGTTCTCCGGCCGGCGGCACCGTCGAGCCACCGCCC
GGAATCAATTCTAAAAAGCACGTCGAAGCACCACGTCGGCGAGGTAGTTG
GTGGCACGGCGGCGGAGTGCGTCGCCGTGTGCTGCTGCTTCCCTTGCGGC
CTCGCGAATTTCCTCATCCTCGCAGTTTATAAACTTCCGGCGGGACTTTG
CCGGCGGGTGATGAAGAAACGGTCACGGCAGCGGACGGTGAAGGAGGGGC
GGTTGCCTCCTCCGATCAAGCGCCACCACTGTTCTTGCGGCTGCTGCGAT
GTTAATAGCCTTAGGGTTCATCCCTTGTGTGAAAATGATGCATATGATAT
CAAAACCCTTCATTCTATTGAGCATAATGATAAAGATGCTATGGCTCTTG
AAAAAGAGATGTGGGATCGGTTTTACAGTACTGGATTCTGGAGAAGCTCA
TCTCGTAGAGAAACCTCTTCCCAAACATCCCCTGAGACGGATGCTTGA
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protein sequence of rna-TanjilR_10715_La_Tanjil_v1.0

>rna-TanjilR_10715_La_Tanjil_v1.0 ID=rna-TanjilR_10715_La_Tanjil_v1.0; Name=rna-TanjilR_10715_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=165bp
MSNKIVLRPAAPSSHRPESILKSTSKHHVGEVVGGTAAECVAVCCCFPCG
LANFLILAVYKLPAGLCRRVMKKRSRQRTVKEGRLPPPIKRHHCSCGCCD
VNSLRVHPLCENDAYDIKTLHSIEHNDKDAMALEKEMWDRFYSTGFWRSS
SRRETSSQTSPETDA
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mRNA from alignment at Chr_LG05-CM007365.1:23915669..23916166+

Legend: mRNApolypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_10715_La_Tanjil_v1.0 ID=rna-TanjilR_10715_La_Tanjil_v1.0; Name=rna-TanjilR_10715; organism=Lupinus angustifolius; type=mRNA; length=498bp; location=Sequence derived from: Chr_LG05-CM007365.1:23915669..23916166+ (Lupinus angustifolius
ATGTCCAACAAGATCGTTCTCCGGCCGGCGGCACCGTCGAGCCACCGCCC
GGAATCAATTCTAAAAAGCACGTCGAAGCACCACGTCGGCGAGGTAGTTG
GTGGCACGGCGGCGGAGTGCGTCGCCGTGTGCTGCTGCTTCCCTTGCGGC
CTCGCGAATTTCCTCATCCTCGCAGTTTATAAACTTCCGGCGGGACTTTG
CCGGCGGGTGATGAAGAAACGGTCACGGCAGCGGACGGTGAAGGAGGGGC
GGTTGCCTCCTCCGATCAAGCGCCACCACTGTTCTTGCGGCTGCTGCGAT
GTTAATAGCCTTAGGGTTCATCCCTTGTGTGAAAATGATGCATATGATAT
CAAAACCCTTCATTCTATTGAGCATAATGATAAAGATGCTATGGCTCTTG
AAAAAGAGATGTGGGATCGGTTTTACAGTACTGGATTCTGGAGAAGCTCA
TCTCGTAGAGAAACCTCTTCCCAAACATCCCCTGAGACGGATGCTTGA
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Coding sequence (CDS) from alignment at Chr_LG05-CM007365.1:23915669..23916166+

>rna-TanjilR_10715_La_Tanjil_v1.0 ID=rna-TanjilR_10715_La_Tanjil_v1.0; Name=rna-TanjilR_10715; organism=Lupinus angustifolius; type=CDS; length=498bp; location=Sequence derived from: Chr_LG05-CM007365.1:23915669..23916166+ (Lupinus angustifolius
ATGTCCAACAAGATCGTTCTCCGGCCGGCGGCACCGTCGAGCCACCGCCC
GGAATCAATTCTAAAAAGCACGTCGAAGCACCACGTCGGCGAGGTAGTTG
GTGGCACGGCGGCGGAGTGCGTCGCCGTGTGCTGCTGCTTCCCTTGCGGC
CTCGCGAATTTCCTCATCCTCGCAGTTTATAAACTTCCGGCGGGACTTTG
CCGGCGGGTGATGAAGAAACGGTCACGGCAGCGGACGGTGAAGGAGGGGC
GGTTGCCTCCTCCGATCAAGCGCCACCACTGTTCTTGCGGCTGCTGCGAT
GTTAATAGCCTTAGGGTTCATCCCTTGTGTGAAAATGATGCATATGATAT
CAAAACCCTTCATTCTATTGAGCATAATGATAAAGATGCTATGGCTCTTG
AAAAAGAGATGTGGGATCGGTTTTACAGTACTGGATTCTGGAGAAGCTCA
TCTCGTAGAGAAACCTCTTCCCAAACATCCCCTGAGACGGATGCTTGA
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