rna-TanjilR_28305
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Match: IN21A_ORYSJ (Protein IN2-1 homolog A OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0283200 PE=2 SV=1) HSP 1 Score: 60.077 bits (144), Expect = 3.288e-27 Identity = 25/32 (78.12%), Postives = 31/32 (96.88%), Query Frame = 3
Query: 1404 VPSLEHNGKVLGESLDLITYIDANFEGPSLVP 1499
VPSLEHNGK++GESLDLI YID++FEGP+L+P
Sbjct: 84 VPSLEHNGKIMGESLDLIKYIDSHFEGPALLP 115 HSP 2 Score: 54.6842 bits (130), Expect = 3.288e-27 Identity = 34/89 (38.20%), Postives = 43/89 (48.31%), Query Frame = 2
Query: 1583 DSAKKEFAEELISYVGTFTKPLYTTLNEDSIQRASKILSL*VEKKCYSSEYNINFQKCSFESGPVLEYLENALGKFDDGPFFLGQFSWV 1849
D K++FA+ELI+Y FTK LY+ L I+ S E+ L+ +E AL KF DGPFFLGQFS V
Sbjct: 117 DPEKRQFADELIAYANAFTKALYSPL--------------------------ISKADLSAETVAALDKIEAALSKFGDGPFFLGQFSLV 179 HSP 3 Score: 51.6026 bits (122), Expect = 3.288e-27 Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 1
Query: 1216 LQGLQDKIELVPIDLQNRPAWYKEKVYPENKV 1311
+GLQDKIELV IDLQ++PAWYKEKVY + V
Sbjct: 53 FKGLQDKIELVGIDLQDKPAWYKEKVYEQGTV 84
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Match: GSTL2_ARATH (Glutathione S-transferase L2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GSTL2 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 6.107e-27 Identity = 26/32 (81.25%), Postives = 28/32 (87.50%), Query Frame = 3
Query: 1404 VPSLEHNGKVLGESLDLITYIDANFEGPSLVP 1499
VP+LEHN +VLGESLDLI YID NFEGPSL P
Sbjct: 132 VPALEHNNRVLGESLDLIKYIDTNFEGPSLTP 163 HSP 2 Score: 58.9214 bits (141), Expect = 6.107e-27 Identity = 27/33 (81.82%), Postives = 30/33 (90.91%), Query Frame = 1
Query: 1219 QGLQDKIELVPIDLQNRPAWYKEKVYPENKVCA 1317
+GLQ+KIELVPIDL+NRPAWYKEKVY NKV A
Sbjct: 102 KGLQNKIELVPIDLKNRPAWYKEKVYSANKVPA 134 HSP 3 Score: 46.595 bits (109), Expect = 6.107e-27 Identity = 29/86 (33.72%), Postives = 42/86 (48.84%), Query Frame = 2
Query: 1592 KKEFAEELISYVGTFTKPLYTTLNEDSIQRASKILSL*VEKKCYSSEYNINFQKCSFESGPVLEYLENALGKFDDGPFFLGQFSWV 1849
K+ A+EL+SY +F+K + +TLN + N +F+ Y+E AL KF++GPFFLGQFS V
Sbjct: 168 KQVVADELLSYTDSFSKAVRSTLNGT----------------------DTNAADVAFD------YIEQALSKFNEGPFFLGQFSLV 225 HSP 4 Score: 60.4622 bits (145), Expect = 2.492e-8 Identity = 25/36 (69.44%), Postives = 30/36 (83.33%), Query Frame = 2
Query: 2189 VDIAYAPFIERFHLVYSDVLKHDITEGRPKLALWVE 2296
VD+AYAPFIERF L+ SDV+ DIT GRP LALW++
Sbjct: 225 VDVAYAPFIERFRLILSDVMNVDITSGRPNLALWIQ 260
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Match: IN21B_ORYSJ (Protein IN2-1 homolog B OS=Oryza sativa subsp. japonica OX=39947 GN=GSTZ5 PE=2 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 1.895e-26 Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1
Query: 1219 QGLQDKIELVPIDLQNRPAWYKEKVYPENKV 1311
+GLQDKI++V IDL +RPAWYKEKVYPENKV
Sbjct: 55 KGLQDKIKIVAIDLADRPAWYKEKVYPENKV 85 HSP 2 Score: 55.8398 bits (133), Expect = 1.895e-26 Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 3
Query: 1404 VPSLEHNGKVLGESLDLITYIDANFEGPSLVP 1499
VPSLEHN +V GESLDL+ YID NFEGP+L+P
Sbjct: 85 VPSLEHNNQVKGESLDLVKYIDTNFEGPALLP 116 HSP 3 Score: 50.8322 bits (120), Expect = 1.895e-26 Identity = 40/118 (33.90%), Postives = 55/118 (46.61%), Query Frame = 2
Query: 1583 DSAKKEFAEELISYVGTFTKPLYTTLNEDSIQRASKILSL*VEKKCYSSEYNINFQKCSFESGPVLEYLENALGKFDDGPFFLGQFSWVS*NQ*SLDFPISFSCFFGRLSTRLFFFGI 1936
DS K++FAEEL++Y F K Y+++ V K C E+ L+ +E AL KF+DGPFFLGQFS V I++ F R ++FF GI
Sbjct: 118 DSEKQQFAEELLAYTDAFNKASYSSI---------------VAKG----------DVCD-EAVAALDKIEAALSKFNDGPFFLGQFSLVD---------IAYVPFIERF--QIFFSGI 198
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Match: IN21B_ORYSI (Protein IN2-1 homolog B OS=Oryza sativa subsp. indica OX=39946 GN=GSTZ5 PE=1 SV=1) HSP 1 Score: 56.6102 bits (135), Expect = 1.895e-26 Identity = 25/31 (80.65%), Postives = 29/31 (93.55%), Query Frame = 1
Query: 1219 QGLQDKIELVPIDLQNRPAWYKEKVYPENKV 1311
+GLQDKI++V IDL +RPAWYKEKVYPENKV
Sbjct: 55 KGLQDKIKIVAIDLADRPAWYKEKVYPENKV 85 HSP 2 Score: 55.8398 bits (133), Expect = 1.895e-26 Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 3
Query: 1404 VPSLEHNGKVLGESLDLITYIDANFEGPSLVP 1499
VPSLEHN +V GESLDL+ YID NFEGP+L+P
Sbjct: 85 VPSLEHNNQVKGESLDLVKYIDTNFEGPALLP 116 HSP 3 Score: 50.8322 bits (120), Expect = 1.895e-26 Identity = 40/118 (33.90%), Postives = 55/118 (46.61%), Query Frame = 2
Query: 1583 DSAKKEFAEELISYVGTFTKPLYTTLNEDSIQRASKILSL*VEKKCYSSEYNINFQKCSFESGPVLEYLENALGKFDDGPFFLGQFSWVS*NQ*SLDFPISFSCFFGRLSTRLFFFGI 1936
DS K++FAEEL++Y F K Y+++ V K C E+ L+ +E AL KF+DGPFFLGQFS V I++ F R ++FF GI
Sbjct: 118 DSEKQQFAEELLAYTDAFNKASYSSI---------------VAKG----------DVCD-EAVAALDKIEAALSKFNDGPFFLGQFSLVD---------IAYVPFIERF--QIFFSGI 198
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Match: GSTL1_ARATH (Glutathione S-transferase L1 OS=Arabidopsis thaliana OX=3702 GN=GSTL1 PE=2 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 3.824e-26 Identity = 24/32 (75.00%), Postives = 29/32 (90.62%), Query Frame = 3
Query: 1404 VPSLEHNGKVLGESLDLITYIDANFEGPSLVP 1499
VP+LEHNGK+ GESLDLI Y+D+NF+GPSL P
Sbjct: 82 VPALEHNGKITGESLDLIKYVDSNFDGPSLYP 113 HSP 2 Score: 53.9138 bits (128), Expect = 3.824e-26 Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1
Query: 1204 IWLL--LQGLQDKIELVPIDLQNRPAWYKEKVYPENKVCA 1317
+W+ L+GLQD+I+LVPIDL NRPAW KEKV P NKV A
Sbjct: 45 VWITRNLKGLQDEIKLVPIDLPNRPAWLKEKVNPANKVPA 84 HSP 3 Score: 50.8322 bits (120), Expect = 3.824e-26 Identity = 32/90 (35.56%), Postives = 44/90 (48.89%), Query Frame = 2
Query: 1583 DSAKKEFAEELISYVG-TFTKPLYTTLNEDSIQRASKILSL*VEKKCYSSEYNINFQKCSFESGPVLEYLENALGKFDDGPFFLGQFSWV 1849
DSAK+EF EEL+ YV TF K ++ + D ++ E+ +++ENAL KFDDGPFFLG+ S V
Sbjct: 115 DSAKREFGEELLKYVDETFVKTVFGSFKGDPVK----------------------------ETASAFDHVENALKKFDDGPFFLGELSLV 176
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Match: IN21_MAIZE (Protein IN2-1 OS=Zea mays OX=4577 GN=IN2-1 PE=2 SV=1) HSP 1 Score: 53.9138 bits (128), Expect = 1.869e-24 Identity = 23/32 (71.88%), Postives = 29/32 (90.62%), Query Frame = 3
Query: 1404 VPSLEHNGKVLGESLDLITYIDANFEGPSLVP 1499
VPSLEH+ +V GESLDLI YID+NF+GP+L+P
Sbjct: 84 VPSLEHDSEVRGESLDLIRYIDSNFDGPALLP 115 HSP 2 Score: 51.6026 bits (122), Expect = 1.869e-24 Identity = 22/32 (68.75%), Postives = 28/32 (87.50%), Query Frame = 1
Query: 1216 LQGLQDKIELVPIDLQNRPAWYKEKVYPENKV 1311
L+GLQDK+ELV IDLQ++PAWYK+KVY + V
Sbjct: 53 LKGLQDKMELVAIDLQDKPAWYKDKVYAQGTV 84 HSP 3 Score: 50.8322 bits (120), Expect = 1.869e-24 Identity = 32/87 (36.78%), Postives = 41/87 (47.13%), Query Frame = 2
Query: 1583 DSAKKEFAEELISYVGTFTKPLYTTLNEDSIQRASKILSL*VEKKCYSSEYNINFQKCSFESGPVLEYLENALGKFDDGPFFLGQFS 1843
D+AK++FA+EL + FTK LY+ L ++ S E L+ LE L KFDDGPFFLGQFS
Sbjct: 117 DAAKRQFADELFASANAFTKALYSPL--------------------------LSHAAVSDEVVAALDKLEADLSKFDDGPFFLGQFS 177
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Match: GSTL3_ARATH (Glutathione S-transferase L3 OS=Arabidopsis thaliana OX=3702 GN=GSTL3 PE=2 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 1.875e-18 Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1
Query: 1204 IWLL--LQGLQDKIELVPIDLQNRPAWYKEKVYPENKVCA 1317
+W+ +GLQ+KI+LVP+DL NRPAWYKEKVYPENKV A
Sbjct: 43 VWITRNFKGLQEKIKLVPLDLGNRPAWYKEKVYPENKVPA 82 HSP 2 Score: 56.225 bits (134), Expect = 1.875e-18 Identity = 24/32 (75.00%), Postives = 28/32 (87.50%), Query Frame = 3
Query: 1404 VPSLEHNGKVLGESLDLITYIDANFEGPSLVP 1499
VP+LEHNGK++GESLDLI Y+D FEGPSL P
Sbjct: 80 VPALEHNGKIIGESLDLIKYLDNTFEGPSLYP 111 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28305 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 7
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_28305_La_Tanjil_v1.0 ID=rna-TanjilR_28305_La_Tanjil_v1.0; Name=rna-TanjilR_28305; organism=Lupinus angustifolius; type=mRNA; length=3239bpback to top protein sequence of rna-TanjilR_28305_La_Tanjil_v1.0 >rna-TanjilR_28305_La_Tanjil_v1.0 ID=rna-TanjilR_28305_La_Tanjil_v1.0; Name=rna-TanjilR_28305_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=236bpback to top mRNA from alignment at Chr_LG05-CM007365.1:25921148..25924386- Legend: polypeptideCDSexonmRNA Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_28305_La_Tanjil_v1.0 ID=rna-TanjilR_28305_La_Tanjil_v1.0; Name=rna-TanjilR_28305; organism=Lupinus angustifolius; type=mRNA; length=3239bp; location=Sequence derived from: Chr_LG05-CM007365.1:25921148..25924386- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG05-CM007365.1:25921148..25924386- >rna-TanjilR_28305_La_Tanjil_v1.0 ID=rna-TanjilR_28305_La_Tanjil_v1.0; Name=rna-TanjilR_28305; organism=Lupinus angustifolius; type=CDS; length=711bp; location=Sequence derived from: Chr_LG05-CM007365.1:25921148..25924386- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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