rna-TanjilR_28617

Transcript Overview
Namerna-TanjilR_28617
Unique Namerna-TanjilR_28617_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length846
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG05-CM007365.1supercontigChr_LG05-CM007365.1:5539763..5540608 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL439Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL491Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR563Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR576Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1071Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1086Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1160Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR0890Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0901Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1060Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0742Pisum sativum Cameor genome v1aPisum sativum
anpsR0756Pisum sativum Cameor genome v1aPisum sativum
anpvR0997Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1044Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1049Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0864Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0998Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1019Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0844Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0846Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0861Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0890Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0897Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR0902Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0911Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0840Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0823Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1002Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1008Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1021Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0825Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0836Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0976Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0860Cicer arietinum
ancarR0871Cicer arietinum
anccaR0878Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0881Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1000Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0909Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0958Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR0994Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1007Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1013Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1027Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1022Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0829Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1035Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1082Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1088Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Psat6g069240.1Pisum sativum Cameor genome v1aPisum sativum
Ca_14033Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
XM_058915070.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat06G0187400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Phvul.007G161400.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cc_v2.0_03356.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
jg1534.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.3g052520.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vfaba.Tiffany.R1.3g043480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004497428.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
PvulFLAVERTChr07.1035Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_18654Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_28617gene-TanjilG_28617_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28617rna-TanjilR_28617_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_28617_La_Tanjil_v1.0rna-TanjilR_28617_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28617_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:5539763..5540608rna-TanjilR_28617_La_Tanjil_v1.0-exon-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:5539763..5540608Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28617_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:5539763..5540608rna-TanjilR_28617_La_Tanjil_v1.0-CDS-Chr_LG05-CM007365.1_La_Tanjil_v1.0-1579734366:5539763..5540608Lupinus angustifoliusCDS


Homology
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: SHGR9_ARATH (E3 ubiquitin-protein ligase SGR9, amyloplastic OS=Arabidopsis thaliana OX=3702 GN=SGR9 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 1.910e-45
Identity = 91/191 (47.64%), Postives = 115/191 (60.21%), Query Frame = 1 
Query:  271 STAMRQRETDAVLLLLMFCDTHKHNPEALDAPYSEWRVNMCNLYSHTLLNLSCSSFIPFGTCLRTILIPYIEMVARCWRMXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXKECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDDVFREIQRLWEVLVK 816
            +  M+ R+ DAV+LLL  C+TH+ +P+ L+A    WR  + N YS+ +L    S+     TC   IL+PYIE + RC R V+ +G       ++  E     AA  A+                G  ECVICKEEM  GRDVCE+PCQH FHW CILPW  KKNTCP CRF+LP+DDVF EIQRLWE+LVK
Sbjct:   90 AVTMKLRDLDAVVLLLFLCETHQLHPDVLEASADNWREILGNTYSNNML----SNNSGLWTCDAGILMPYIETLVRCKRFVDIMGGYNHLRRRDQKEGYQVPAARAAVVALRAVEVFNVAASNAGEVECVICKEEMSEGRDVCEMPCQHFFHWKCILPWLSKKNTCPFCRFQLPTDDVFSEIQRLWEILVK 276
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: RNG1L_ARATH (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 3.911e-12
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:  622 KECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDD 774
             +C +C +E   G DV ++PC+H+FH  C+LPW    N+CP CRF LP+DD
Sbjct:  214 NQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNSCPVCRFELPTDD 264
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: RN181_XENTR (E3 ubiquitin-protein ligase RNF181 OS=Xenopus tropicalis OX=8364 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.339e-12
Identity = 28/49 (57.14%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  625 ECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSD 771
            +C +C  E   G  V +LPC+HLFH SCILPW GK N+CP CR  LP+D
Sbjct:   78 KCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELPTD 126
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana OX=3702 GN=CIP8 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 1.227e-11
Identity = 26/56 (46.43%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:  628 CVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDDVFREIQR 795
            C +CK+ M +G    +LPC H +H  CI+PW G +N+CP CRF+L +DD   E +R
Sbjct:  257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEER 312
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: RN181_XENLA (E3 ubiquitin-protein ligase RNF181 OS=Xenopus laevis OX=8355 GN=rnf181 PE=2 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.385e-11
Identity = 27/49 (55.10%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  625 ECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSD 771
            +C +C  E   G  V +LPC+HLFH +CILPW GK N+CP CR  LP+D
Sbjct:   78 KCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELPTD 126
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: AIP2_ARATH (E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis thaliana OX=3702 GN=AIP2 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 8.056e-11
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:  625 ECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDD 774
            EC ICKE + IG  + ELPC+H FH  C+ PW  + N+CP CR  LP+DD
Sbjct:  229 ECCICKENLVIGDKMQELPCKHTFHPPCLKPWLDEHNSCPICRHELPTDD 278
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: RDUF1_ARATH (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1)

HSP 1 Score: 65.0846 bits (157), Expect = 9.788e-11
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:  628 CVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDDVFR 783
            C +C E    G +  E+PC+H+FH  CI+PW   +N+CP CRF LPSD + R
Sbjct:  215 CAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFELPSDPIQR 266
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: RN181_DROME (E3 ubiquitin-protein ligase RNF181 homolog OS=Drosophila melanogaster OX=7227 GN=CG7694 PE=2 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.761e-10
Identity = 28/59 (47.46%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  625 ECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDD-VFREIQRL 798
            EC +CKE    G+    LPC+H FH  CIL W  K N+CP CR+ L +DD V+ E++R 
Sbjct:   69 ECSVCKEPAEEGQKYRILPCKHEFHEECILLWLKKTNSCPLCRYELETDDPVYEELRRF 127
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: RN181_MOUSE (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 61.6178 bits (148), Expect = 1.916e-10
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:  625 ECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDD 774
            +C +C  E      V E+PC HLFH +CILPW  K N+CP CR  LP+DD
Sbjct:   87 KCPVCLLEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTDD 136
[Close]
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Match: RN181_HUMAN (E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens OX=9606 GN=RNF181 PE=1 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 2.524e-10
Identity = 28/57 (49.12%), Postives = 34/57 (59.65%), Query Frame = 1 
Query:  625 ECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCCRFRLPSDDVFREIQR 795
            +C +C  E        E+PC HLFH SCILPW  K N+CP CR+ LP+DD   E  R
Sbjct:   75 KCPVCLLEFEEEETAIEMPCHHLFHSSCILPWLSKTNSCPLCRYELPTDDDTYEEHR 131
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28617 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 10
Match NameE-valueIdentityDescription
SHGR9_ARATH1.910e-4547.64E3 ubiquitin-protein ligase SGR9, amyloplastic OS=... [more]
RNG1L_ARATH3.911e-1249.02E3 ubiquitin-protein ligase RING1-like OS=Arabidop... [more]
RN181_XENTR6.339e-1257.14E3 ubiquitin-protein ligase RNF181 OS=Xenopus trop... [more]
CIP8_ARATH1.227e-1146.43E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_XENLA1.385e-1155.10E3 ubiquitin-protein ligase RNF181 OS=Xenopus laev... [more]
AIP2_ARATH8.056e-1154.00E3 ubiquitin-protein ligase AIP2 OS=Arabidopsis th... [more]
RDUF1_ARATH9.788e-1148.08E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis t... [more]
RN181_DROME1.761e-1047.46E3 ubiquitin-protein ligase RNF181 homolog OS=Dros... [more]
RN181_MOUSE1.916e-1052.00E3 ubiquitin-protein ligase RNF181 OS=Mus musculus... [more]
RN181_HUMAN2.524e-1049.12E3 ubiquitin-protein ligase RNF181 OS=Homo sapiens... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 210..250
e-value: 9.8E-6
score: 35.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 208..251
e-value: 3.5E-11
score: 43.3
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 210..251
score: 11.958
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 202..263
e-value: 4.4E-17
score: 63.0
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 205..257

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_28617_La_Tanjil_v1.0 ID=rna-TanjilR_28617_La_Tanjil_v1.0; Name=rna-TanjilR_28617; organism=Lupinus angustifolius; type=mRNA; length=846bp
ATGGAAGAAACAACAGCAACAATCATAGCTGCACTCTCCACCCTCACATC
TTCCCATATCTCAGATCTCACAAACACCATCCTCTCAGCcacccaccacc
accaccaccgcctCTCCTTCCTCCTCTCTTCCCCTACCCTTTTTTCTTTA
ACCCTTCATCATCTCCACAAACTCTCCCTCCATCAAAAGTCCCTCCTCAT
TGCCCGCCACCTCCTCTCATCCCTCCACCACCTCACCCGCCACCTCATAT
CATCATCGCCGCCTCCTTTGTCCACTGCCATGAGACAACGTGAGACTGAT
GCTGTGTTACTACTACTCATGTTCTGTGACACACACAAACACAACCCTGA
AGCCTTGGATGCACCCTATTCAGAATGGAGGGTGAACATGTGCAATCTCT
ACTCTCACACTCTCTTGAACCTTTCTTGTTCTTCATTCATACCCTTTGGG
ACATGTTTAAGGACAATCTTGATCCCTTATATTGAGATGGTGGCACGGTG
CTGGAGGATGGTGGAAGCACTAggttgtggtggtggtggtggagggaAGG
AAGTGGGGGAGGTGGCGGCATCTGTGGCGGCAGTGGTTGCTCTTCCGGCG
GTGGAGGTGGTTGTTGGTGGTAAAGAATGCGTGATATGCAAAGAGGAGAT
GAGAATAGGGAGGGATGTGTGTGAATTGCCATGTCAACATTTGTTTCATT
GGAGTTGCATATTGCCTTGGTTTGGGAAGAAGAACACGTGTCCTTGCTGC
AGGTTCAGGCTACCGTCCGATGATGTCTTTAGAGAGATCCAACGGCTGTG
GGAAGTCTTGGTTAAAATGGGTGGGAAAGAATACTTACGACGATGA
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protein sequence of rna-TanjilR_28617_La_Tanjil_v1.0

>rna-TanjilR_28617_La_Tanjil_v1.0 ID=rna-TanjilR_28617_La_Tanjil_v1.0; Name=rna-TanjilR_28617_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=281bp
MEETTATIIAALSTLTSSHISDLTNTILSATHHHHHRLSFLLSSPTLFSL
TLHHLHKLSLHQKSLLIARHLLSSLHHLTRHLISSSPPPLSTAMRQRETD
AVLLLLMFCDTHKHNPEALDAPYSEWRVNMCNLYSHTLLNLSCSSFIPFG
TCLRTILIPYIEMVARCWRMVEALGCGGGGGGKEVGEVAASVAAVVALPA
VEVVVGGKECVICKEEMRIGRDVCELPCQHLFHWSCILPWFGKKNTCPCC
RFRLPSDDVFREIQRLWEVLVKMGGKEYLRR
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mRNA from alignment at Chr_LG05-CM007365.1:5539763..5540608+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_28617_La_Tanjil_v1.0 ID=rna-TanjilR_28617_La_Tanjil_v1.0; Name=rna-TanjilR_28617; organism=Lupinus angustifolius; type=mRNA; length=846bp; location=Sequence derived from: Chr_LG05-CM007365.1:5539763..5540608+ (Lupinus angustifolius
ATGGAAGAAACAACAGCAACAATCATAGCTGCACTCTCCACCCTCACATC
TTCCCATATCTCAGATCTCACAAACACCATCCTCTCAGCcacccaccacc
accaccaccgcctCTCCTTCCTCCTCTCTTCCCCTACCCTTTTTTCTTTA
ACCCTTCATCATCTCCACAAACTCTCCCTCCATCAAAAGTCCCTCCTCAT
TGCCCGCCACCTCCTCTCATCCCTCCACCACCTCACCCGCCACCTCATAT
CATCATCGCCGCCTCCTTTGTCCACTGCCATGAGACAACGTGAGACTGAT
GCTGTGTTACTACTACTCATGTTCTGTGACACACACAAACACAACCCTGA
AGCCTTGGATGCACCCTATTCAGAATGGAGGGTGAACATGTGCAATCTCT
ACTCTCACACTCTCTTGAACCTTTCTTGTTCTTCATTCATACCCTTTGGG
ACATGTTTAAGGACAATCTTGATCCCTTATATTGAGATGGTGGCACGGTG
CTGGAGGATGGTGGAAGCACTAggttgtggtggtggtggtggagggaAGG
AAGTGGGGGAGGTGGCGGCATCTGTGGCGGCAGTGGTTGCTCTTCCGGCG
GTGGAGGTGGTTGTTGGTGGTAAAGAATGCGTGATATGCAAAGAGGAGAT
GAGAATAGGGAGGGATGTGTGTGAATTGCCATGTCAACATTTGTTTCATT
GGAGTTGCATATTGCCTTGGTTTGGGAAGAAGAACACGTGTCCTTGCTGC
AGGTTCAGGCTACCGTCCGATGATGTCTTTAGAGAGATCCAACGGCTGTG
GGAAGTCTTGGTTAAAATGGGTGGGAAAGAATACTTACGACGATGA
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Coding sequence (CDS) from alignment at Chr_LG05-CM007365.1:5539763..5540608+

>rna-TanjilR_28617_La_Tanjil_v1.0 ID=rna-TanjilR_28617_La_Tanjil_v1.0; Name=rna-TanjilR_28617; organism=Lupinus angustifolius; type=CDS; length=846bp; location=Sequence derived from: Chr_LG05-CM007365.1:5539763..5540608+ (Lupinus angustifolius
ATGGAAGAAACAACAGCAACAATCATAGCTGCACTCTCCACCCTCACATC
TTCCCATATCTCAGATCTCACAAACACCATCCTCTCAGCcacccaccacc
accaccaccgcctCTCCTTCCTCCTCTCTTCCCCTACCCTTTTTTCTTTA
ACCCTTCATCATCTCCACAAACTCTCCCTCCATCAAAAGTCCCTCCTCAT
TGCCCGCCACCTCCTCTCATCCCTCCACCACCTCACCCGCCACCTCATAT
CATCATCGCCGCCTCCTTTGTCCACTGCCATGAGACAACGTGAGACTGAT
GCTGTGTTACTACTACTCATGTTCTGTGACACACACAAACACAACCCTGA
AGCCTTGGATGCACCCTATTCAGAATGGAGGGTGAACATGTGCAATCTCT
ACTCTCACACTCTCTTGAACCTTTCTTGTTCTTCATTCATACCCTTTGGG
ACATGTTTAAGGACAATCTTGATCCCTTATATTGAGATGGTGGCACGGTG
CTGGAGGATGGTGGAAGCACTAggttgtggtggtggtggtggagggaAGG
AAGTGGGGGAGGTGGCGGCATCTGTGGCGGCAGTGGTTGCTCTTCCGGCG
GTGGAGGTGGTTGTTGGTGGTAAAGAATGCGTGATATGCAAAGAGGAGAT
GAGAATAGGGAGGGATGTGTGTGAATTGCCATGTCAACATTTGTTTCATT
GGAGTTGCATATTGCCTTGGTTTGGGAAGAAGAACACGTGTCCTTGCTGC
AGGTTCAGGCTACCGTCCGATGATGTCTTTAGAGAGATCCAACGGCTGTG
GGAAGTCTTGGTTAAAATGGGTGGGAAAGAATACTTACGACGATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD