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Transcript Overview
Name | rna-TanjilR_30768 |
Unique Name | rna-TanjilR_30768_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2060 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_30768 | rna-TanjilR_30768_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_30768_La_Tanjil_v1.0 | rna-TanjilR_30768_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13648550..13648617 | rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13648550..13648617 | Lupinus angustifolius | CDS |
rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13647246..13647360 | rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13647246..13647360 | Lupinus angustifolius | CDS |
rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646984..13647073 | rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646984..13647073 | Lupinus angustifolius | CDS |
rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646750..13646848 | rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646750..13646848 | Lupinus angustifolius | CDS |
rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646558..13646659 | rna-TanjilR_30768_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646558..13646659 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13648550..13648617 | rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13648550..13648617 | Lupinus angustifolius | exon |
rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13647246..13647360 | rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13647246..13647360 | Lupinus angustifolius | exon |
rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646984..13647073 | rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646984..13647073 | Lupinus angustifolius | exon |
rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646750..13646848 | rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646750..13646848 | Lupinus angustifolius | exon |
rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646558..13646659 | rna-TanjilR_30768_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:13646558..13646659 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
IPR008637 | HR-like lesion-inducer | PFAM | PF05514 | HR_lesion | coord: 1..138 e-value: 3.5E-52 score: 176.3 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_30768_La_Tanjil_v1.0 ID=rna-TanjilR_30768_La_Tanjil_v1.0; Name=rna-TanjilR_30768; organism=Lupinus angustifolius; type=mRNA; length=2060bp ATGGGGTTCTTCTCCTTCCTGGGGCGTGTCCTCTTTGCTTCTCTCTTCAT CTTATCCGCATGGCAGATGTAAGTCCCTTCTCAGATCTATCACTTCTTTT GTTTTTTGTTTTATGTGTACCATTAATATTCATATAAAGGACATTACTTT CCACTTTCTTTTCATTTTTGAGATGTGGGTTTTCATTTTCCTGCTTTGGT TTCAACTATTGAATGTTAAAATTTGATTTTTTAGATTTGTCTTGTTAGTT GGAGATACACACATAGATTGTTTAGTTCGAGGTTGTTTGATTCCGTTATG GCTTATTGGGTTTCTTATGTTTAGTGATTATTTTTTGAAATTATTGAACC GTTAGATAATTAATTGTATTTTGCTTTCAAGTATAATGCATCTGTTAATG AAGAGTCATATCTCTTGTGTGTAGATAAAATGTACATGATATCAATTTAA ACTATCAATTATTAATCATCTCAAGATCCTGAAATGTTGAGATTGTGAAG TGGTGCATGACTATTAGCAACAACTAATGCAGTTGAAATCTTATGTTGCA AATGAAATAGGGTTTTTATGTTGTCTTTCGATTAAGTTAGCTCCTCGAGA TCATTTAAGGATTTTGATGTTTGCACTTAATACTAAGACTTTGATATCAA ATTAGGAACAGACTTCAAGATGATAGATCTTGTTGTCGAGGCAACTACAT ATGTCGTGAACATTTAGTTTATGTTATATATAAATCAAGTAATGAAAACA AGGTGAATTCCTTTTACTATGAACCAGGACTAAAATGAACATTCAATTAC GATCGCCATTGTTTCCTTTACAAACTGATAGCCTGTTAATCGTTAAGCCA CAAATATGAGATTCTCCTGCTCCAAATATTGACATCGGCAAATTCTAAAA CCATCTTTGAATCTCTGATCCAATTCCTGTGTTCCCAGTACCAAAATCTA ATATTGAATTGTTAGTTCGAATGACAGTTAGGCAGCCTTTTCTGCAGTCA AATCTGGTGTTATTTCGATTTGTAACTTTCCTAGAGATAGATGTGCATAA TCAATTTATGATTTATTAAAGTGTGTGACCTGTTTACCACATTCCTTGGT TGAATTCTTTTGATTAGGAAATCAAATTTAATGTACCTTAAGTGATTTAA GTTTGCTAATGTACCACTTTGTGCTTTCATACATAGCTGTAACAGTGATA TAATACTATTAAAGCAATATTTAGTACATTTTCATTGATATAGCATTTAT GTGCTAGGTTTAATGAATTTGATGCCAATGGTGGACCCATTGCAAAGGAG TTGACTCCCAAGTTCACTGCTGTGAAGATAAACTTGTCCTCCAAATTGGG GATAGGACTACCAGATTTTGATGTAAGACCAACTTTTCTTTCACTGTTAA GAAAGTCTGAGATTAATGCTTTGTCAATGAATATGATTTATGATAGAGCA TTATGACATCGTTTGATTTATGTAGTTGATTCCACCTAGTGGGATAAAGG CTTGGTTGTTGTTGTTCCCTTTCTGATTGAGATGTTAAATACAGGTTCGA CAATTTATTGCCACTATCATAATTCTAAAAGGGGCTGGAGGGCTTCTATT CGTGTTTGGCAGCACACTTGGAGCTTTTCTACTGGTAAGGGCTTCATCTC CTCCTAGGTTTGGAATGCGAAGAAAATGCTATTCTTTATCTTAAGTTTAA TTTAAGTTCTAACCATTGTTGTTTTTCCAATAAAAAAGAGCCCTGATTGT AAGTTTTCTCTTTTTGTAGCTTGTGCTTCTTGCAATGACTACTCCGCTTC TGTACGATTTTTATAACTATAAACCCAGCAAGCCTGAGTATACTCTACTG CTGAATGATTTCTTGCAGGTTTGTCCAAATTTCTTTCACTTTCTGTGTGT TTGGCTAATGATTTCATCTTTGTGAGAACTTAATATATTGTGTTTACTTT GATGGCAGAGCATAGCACTTTTTGGTGCATTGTTATTCTTTATAGGGATG AAGACCTCAATTTCTAGGAGACAAATCAGAAAGAAGACCCCCAAAGCAAA GACAGTTTAG back to topprotein sequence of rna-TanjilR_30768_La_Tanjil_v1.0 >rna-TanjilR_30768_La_Tanjil_v1.0 ID=rna-TanjilR_30768_La_Tanjil_v1.0; Name=rna-TanjilR_30768_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=157bp MGFFSFLGRVLFASLFILSAWQMFNEFDANGGPIAKELTPKFTAVKINLS SKLGIGLPDFDVRQFIATIIILKGAGGLLFVFGSTLGAFLLLVLLAMTTP LLYDFYNYKPSKPEYTLLLNDFLQSIALFGALLFFIGMKTSISRRQIRKK TPKAKTV back to topmRNA from alignment at Chr_LG07-CM007367.1:13646558..13648617- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_30768_La_Tanjil_v1.0 ID=rna-TanjilR_30768_La_Tanjil_v1.0; Name=rna-TanjilR_30768; organism=Lupinus angustifolius; type=mRNA; length=2060bp; location=Sequence derived from: Chr_LG07-CM007367.1:13646558..13648617- (Lupinus angustifolius ATGGGGTTCTTCTCCTTCCTGGGGCGTGTCCTCTTTGCTTCTCTCTTCAT
CTTATCCGCATGGCAGATGTAAGTCCCTTCTCAGATCTATCACTTCTTTT
GTTTTTTGTTTTATGTGTACCATTAATATTCATATAAAGGACATTACTTT
CCACTTTCTTTTCATTTTTGAGATGTGGGTTTTCATTTTCCTGCTTTGGT
TTCAACTATTGAATGTTAAAATTTGATTTTTTAGATTTGTCTTGTTAGTT
GGAGATACACACATAGATTGTTTAGTTCGAGGTTGTTTGATTCCGTTATG
GCTTATTGGGTTTCTTATGTTTAGTGATTATTTTTTGAAATTATTGAACC
GTTAGATAATTAATTGTATTTTGCTTTCAAGTATAATGCATCTGTTAATG
AAGAGTCATATCTCTTGTGTGTAGATAAAATGTACATGATATCAATTTAA
ACTATCAATTATTAATCATCTCAAGATCCTGAAATGTTGAGATTGTGAAG
TGGTGCATGACTATTAGCAACAACTAATGCAGTTGAAATCTTATGTTGCA
AATGAAATAGGGTTTTTATGTTGTCTTTCGATTAAGTTAGCTCCTCGAGA
TCATTTAAGGATTTTGATGTTTGCACTTAATACTAAGACTTTGATATCAA
ATTAGGAACAGACTTCAAGATGATAGATCTTGTTGTCGAGGCAACTACAT
ATGTCGTGAACATTTAGTTTATGTTATATATAAATCAAGTAATGAAAACA
AGGTGAATTCCTTTTACTATGAACCAGGACTAAAATGAACATTCAATTAC
GATCGCCATTGTTTCCTTTACAAACTGATAGCCTGTTAATCGTTAAGCCA
CAAATATGAGATTCTCCTGCTCCAAATATTGACATCGGCAAATTCTAAAA
CCATCTTTGAATCTCTGATCCAATTCCTGTGTTCCCAGTACCAAAATCTA
ATATTGAATTGTTAGTTCGAATGACAGTTAGGCAGCCTTTTCTGCAGTCA
AATCTGGTGTTATTTCGATTTGTAACTTTCCTAGAGATAGATGTGCATAA
TCAATTTATGATTTATTAAAGTGTGTGACCTGTTTACCACATTCCTTGGT
TGAATTCTTTTGATTAGGAAATCAAATTTAATGTACCTTAAGTGATTTAA
GTTTGCTAATGTACCACTTTGTGCTTTCATACATAGCTGTAACAGTGATA
TAATACTATTAAAGCAATATTTAGTACATTTTCATTGATATAGCATTTAT
GTGCTAGGTTTAATGAATTTGATGCCAATGGTGGACCCATTGCAAAGGAG
TTGACTCCCAAGTTCACTGCTGTGAAGATAAACTTGTCCTCCAAATTGGG
GATAGGACTACCAGATTTTGATGTAAGACCAACTTTTCTTTCACTGTTAA
GAAAGTCTGAGATTAATGCTTTGTCAATGAATATGATTTATGATAGAGCA
TTATGACATCGTTTGATTTATGTAGTTGATTCCACCTAGTGGGATAAAGG
CTTGGTTGTTGTTGTTCCCTTTCTGATTGAGATGTTAAATACAGGTTCGA
CAATTTATTGCCACTATCATAATTCTAAAAGGGGCTGGAGGGCTTCTATT
CGTGTTTGGCAGCACACTTGGAGCTTTTCTACTGGTAAGGGCTTCATCTC
CTCCTAGGTTTGGAATGCGAAGAAAATGCTATTCTTTATCTTAAGTTTAA
TTTAAGTTCTAACCATTGTTGTTTTTCCAATAAAAAAGAGCCCTGATTGT
AAGTTTTCTCTTTTTGTAGCTTGTGCTTCTTGCAATGACTACTCCGCTTC
TGTACGATTTTTATAACTATAAACCCAGCAAGCCTGAGTATACTCTACTG
CTGAATGATTTCTTGCAGGTTTGTCCAAATTTCTTTCACTTTCTGTGTGT
TTGGCTAATGATTTCATCTTTGTGAGAACTTAATATATTGTGTTTACTTT
GATGGCAGAGCATAGCACTTTTTGGTGCATTGTTATTCTTTATAGGGATG
AAGACCTCAATTTCTAGGAGACAAATCAGAAAGAAGACCCCCAAAGCAAA
GACAGTTTAG back to topCoding sequence (CDS) from alignment at Chr_LG07-CM007367.1:13646558..13648617- >rna-TanjilR_30768_La_Tanjil_v1.0 ID=rna-TanjilR_30768_La_Tanjil_v1.0; Name=rna-TanjilR_30768; organism=Lupinus angustifolius; type=CDS; length=474bp; location=Sequence derived from: Chr_LG07-CM007367.1:13646558..13648617- (Lupinus angustifolius ATGGGGTTCTTCTCCTTCCTGGGGCGTGTCCTCTTTGCTTCTCTCTTCAT CTTATCCGCATGGCAGATGTTTAATGAATTTGATGCCAATGGTGGACCCA TTGCAAAGGAGTTGACTCCCAAGTTCACTGCTGTGAAGATAAACTTGTCC TCCAAATTGGGGATAGGACTACCAGATTTTGATGTTCGACAATTTATTGC CACTATCATAATTCTAAAAGGGGCTGGAGGGCTTCTATTCGTGTTTGGCA GCACACTTGGAGCTTTTCTACTGCTTGTGCTTCTTGCAATGACTACTCCG CTTCTGTACGATTTTTATAACTATAAACCCAGCAAGCCTGAGTATACTCT ACTGCTGAATGATTTCTTGCAGAGCATAGCACTTTTTGGTGCATTGTTAT TCTTTATAGGGATGAAGACCTCAATTTCTAGGAGACAAATCAGAAAGAAG ACCCCCAAAGCAAAGACAGTTTAG back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: INTERPRO
Term | Definition |
IPR008637 | HR_lesion |
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