rna-TanjilR_07189

Transcript Overview


Name	rna-TanjilR_07189
Unique Name	rna-TanjilR_07189_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	267
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG08-CM007368.1	supercontig	Chr_LG08-CM007368.1:22184428..22184694 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL250	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL449	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL607	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR1266	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR1273	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR1337	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
anccR1456	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR1092	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1143	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR1337	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0948	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1277	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1302	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1084	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1110	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1203	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR1205	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR1218	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR1274	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1086	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1112	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1123	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvrvR1073	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1036	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR1063	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR1203	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1243	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0998	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1042	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancarR1062		Cicer arietinum
ancarR1105		Cicer arietinum
anccaR1056	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1080	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1274	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1276	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1283	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1164	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR1186	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR1273	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1265	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR1266	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1275	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR1283	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1275	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR1045	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR1070	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1313	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1340	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_07189	gene-TanjilG_07189_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_07189	rna-TanjilR_07189_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_07189_La_Tanjil_v1.0	rna-TanjilR_07189_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_07189_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694	rna-TanjilR_07189_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_07189_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694	rna-TanjilR_07189_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_07189 vs.

BLAST of rna-TanjilR_07189 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022251	Protein of unknown function wound-induced	PFAM	PF12609	DUF3774	coord: 12..87 e-value: 3.7E-35 score: 120.8

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG08-CM007368.1:22184428..22184694-
coding sequence from alignment at Chr_LG08-CM007368.1:22184428..22184694-

mRNA sequence

>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189; organism=Lupinus angustifolius; type=mRNA; length=267bp
ATGAGTTCAACATCTGCAATTAGAGCTTGGAGTGTAGCAGCTAGTGTTGG
AGTAGTTGAGGCCTTGAAGGATCAAGGAATATGCAGATGGAACTATGCTT
TAAGATCAGCTCAACAACATGTTAAAAACCATGTTAGGTCCTTCTCTCAG
GGAAAAAAGCTTTCCTCTTCTGCTGTGTTTTCCAAAAGACTAAGAGATGA
GAAGGCAAAGCAATCAGAAGAGTCATTGAGAACTGTCATGTACCTAAGTT
GCTGGGGTCCCAATTAG

protein sequence of rna-TanjilR_07189_La_Tanjil_v1.0

>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=88bp
MSSTSAIRAWSVAASVGVVEALKDQGICRWNYALRSAQQHVKNHVRSFSQ
GKKLSSSAVFSKRLRDEKAKQSEESLRTVMYLSCWGPN

mRNA from alignment at Chr_LG08-CM007368.1:22184428..22184694-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189; organism=Lupinus angustifolius; type=mRNA; length=267bp; location=Sequence derived from: Chr_LG08-CM007368.1:22184428..22184694- (Lupinus angustifolius
ATGAGTTCAACATCTGCAATTAGAGCTTGGAGTGTAGCAGCTAGTGTTGG
AGTAGTTGAGGCCTTGAAGGATCAAGGAATATGCAGATGGAACTATGCTT
TAAGATCAGCTCAACAACATGTTAAAAACCATGTTAGGTCCTTCTCTCAG
GGAAAAAAGCTTTCCTCTTCTGCTGTGTTTTCCAAAAGACTAAGAGATGA
GAAGGCAAAGCAATCAGAAGAGTCATTGAGAACTGTCATGTACCTAAGTT
GCTGGGGTCCCAATTAG

Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:22184428..22184694-

>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189; organism=Lupinus angustifolius; type=CDS; length=267bp; location=Sequence derived from: Chr_LG08-CM007368.1:22184428..22184694- (Lupinus angustifolius
ATGAGTTCAACATCTGCAATTAGAGCTTGGAGTGTAGCAGCTAGTGTTGG
AGTAGTTGAGGCCTTGAAGGATCAAGGAATATGCAGATGGAACTATGCTT
TAAGATCAGCTCAACAACATGTTAAAAACCATGTTAGGTCCTTCTCTCAG
GGAAAAAAGCTTTCCTCTTCTGCTGTGTTTTCCAAAAGACTAAGAGATGA
GAAGGCAAAGCAATCAGAAGAGTCATTGAGAACTGTCATGTACCTAAGTT
GCTGGGGTCCCAATTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR022251	DUF3774_wound-induced

Search form

rna-TanjilR_07189