rna-TanjilR_07189

Transcript Overview
Namerna-TanjilR_07189
Unique Namerna-TanjilR_07189_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length267
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:22184428..22184694 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL250Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL449Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1266Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1273Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1337Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1456Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1092Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1143Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1337Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0948Pisum sativum Cameor genome v1aPisum sativum
anpvR1277Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1302Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1084Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1110Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1203Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1205Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1218Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1274Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1086Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1112Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1123Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvrvR1073Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1036Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1063Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1203Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1243Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0998Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1042Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancarR1062Cicer arietinum
ancarR1105Cicer arietinum
anccaR1056Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1080Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1274Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1276Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1283Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1164Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1186Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR1273Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1265Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR1266Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1275Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1283Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1275Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1045Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1070Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1313Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1340Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_07189gene-TanjilG_07189_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07189rna-TanjilR_07189_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_07189_La_Tanjil_v1.0rna-TanjilR_07189_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07189_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694rna-TanjilR_07189_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_07189_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694rna-TanjilR_07189_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:22184428..22184694Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_07189 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022251Protein of unknown function wound-inducedPFAMPF12609DUF3774coord: 12..87
e-value: 3.7E-35
score: 120.8

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189; organism=Lupinus angustifolius; type=mRNA; length=267bp
ATGAGTTCAACATCTGCAATTAGAGCTTGGAGTGTAGCAGCTAGTGTTGG
AGTAGTTGAGGCCTTGAAGGATCAAGGAATATGCAGATGGAACTATGCTT
TAAGATCAGCTCAACAACATGTTAAAAACCATGTTAGGTCCTTCTCTCAG
GGAAAAAAGCTTTCCTCTTCTGCTGTGTTTTCCAAAAGACTAAGAGATGA
GAAGGCAAAGCAATCAGAAGAGTCATTGAGAACTGTCATGTACCTAAGTT
GCTGGGGTCCCAATTAG
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protein sequence of rna-TanjilR_07189_La_Tanjil_v1.0

>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=88bp
MSSTSAIRAWSVAASVGVVEALKDQGICRWNYALRSAQQHVKNHVRSFSQ
GKKLSSSAVFSKRLRDEKAKQSEESLRTVMYLSCWGPN
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mRNA from alignment at Chr_LG08-CM007368.1:22184428..22184694-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189; organism=Lupinus angustifolius; type=mRNA; length=267bp; location=Sequence derived from: Chr_LG08-CM007368.1:22184428..22184694- (Lupinus angustifolius
ATGAGTTCAACATCTGCAATTAGAGCTTGGAGTGTAGCAGCTAGTGTTGG
AGTAGTTGAGGCCTTGAAGGATCAAGGAATATGCAGATGGAACTATGCTT
TAAGATCAGCTCAACAACATGTTAAAAACCATGTTAGGTCCTTCTCTCAG
GGAAAAAAGCTTTCCTCTTCTGCTGTGTTTTCCAAAAGACTAAGAGATGA
GAAGGCAAAGCAATCAGAAGAGTCATTGAGAACTGTCATGTACCTAAGTT
GCTGGGGTCCCAATTAG
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:22184428..22184694-

>rna-TanjilR_07189_La_Tanjil_v1.0 ID=rna-TanjilR_07189_La_Tanjil_v1.0; Name=rna-TanjilR_07189; organism=Lupinus angustifolius; type=CDS; length=267bp; location=Sequence derived from: Chr_LG08-CM007368.1:22184428..22184694- (Lupinus angustifolius
ATGAGTTCAACATCTGCAATTAGAGCTTGGAGTGTAGCAGCTAGTGTTGG
AGTAGTTGAGGCCTTGAAGGATCAAGGAATATGCAGATGGAACTATGCTT
TAAGATCAGCTCAACAACATGTTAAAAACCATGTTAGGTCCTTCTCTCAG
GGAAAAAAGCTTTCCTCTTCTGCTGTGTTTTCCAAAAGACTAAGAGATGA
GAAGGCAAAGCAATCAGAAGAGTCATTGAGAACTGTCATGTACCTAAGTT
GCTGGGGTCCCAATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR022251DUF3774_wound-induced