rna-TanjilR_07226
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_07226 vs. DB:Swiss
Match: RP6L3_ARATH (Protein RRP6-like 3 OS=Arabidopsis thaliana OX=3702 GN=RRP6L3 PE=2 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 1.107e-113 Identity = 122/178 (68.54%), Postives = 145/178 (81.46%), Query Frame = 3
Query: 4827 QLSRYVSRDLAKVVEEDPPAITLLFEPKGRPEDEDNDFYIQSKKNMCVGCGEGNHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHASAEKYKRKIASEFGIPLYVRRVIHPXXXXXXX----------XXXXXVSPLQLRTAAMALLRHGPRMPPNRREELTEV*SYFF 5330
+L Y++R LAK+VEE+PPAI LLFEPKGRPEDE NDFYIQ+K+N+CVGCGEG HYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHA+AE+YK++IA+EFGIPL+VRRV+ + +E+ GVSPL LR+AAMALLRHG RMP +RREEL + ++
Sbjct: 537 KLEWYLNRGLAKLVEENPPAIMLLFEPKGRPEDEGNDFYIQTKRNICVGCGEGKHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHAAAERYKKQIATEFGIPLFVRRVLDSKEAQGTSSLVEDESTGDSEDAGVSPLHLRSAAMALLRHGNRMPSSRREELLQTVKMYY 714 HSP 2 Score: 182.185 bits (461), Expect = 1.107e-113 Identity = 91/175 (52.00%), Postives = 123/175 (70.29%), Query Frame = 1
Query: 4252 FQARIHDENLKYVLSDQAIVVLASHPSASHSEIYSIIAQADVNMETGLNGFNPY--PSPVVCSHVGDIYHILADELVSHGDIYSVILQECLGKYGSCPLSIFNYALLVNSSPRPTL--AYKHSALKNPKR-ISRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEW 4761
RIHDE+ +YVLSDQAIV L+ + EIY IA D+ E+ + + P PV+CSH+ DIY ++ D+L D+ V+L++CLG G+CP+S+FNY+LLVN + + A K + KN K+ +RKASR+LFV+KFSCK+PVYHNCRI+ANDGRLLCYCD++KLEW
Sbjct: 366 LMGRIHDESTRYVLSDQAIVGLSCKQPTTTEEIYDTIAHIDLATESSPSLSSSVQSPYPVICSHLDDIYKMILDKLAKLDDLLPVVLKKCLGTNGTCPISVFNYSLLVNFKTKLSSHSAPKQNGHKNFKQQFTRKASRELFVKKFSCKAPVYHNCRIYANDGRLLCYCDKRKLEW 540 HSP 3 Score: 142.51 bits (358), Expect = 1.225e-32 Identity = 83/228 (36.40%), Postives = 118/228 (51.75%), Query Frame = 3
Query: 5619 LQIVKRYYGGKEISEEDLERALLVGMSPHGKRKFEKKRGKTSRNSMGSTATEPGQENHACCTTTMGNMNISKVDAPNGTYANEETRKEGDRENFMAKDDFGNPSLASDLVVDGAVSAAFNGNTNTVKTTDYNESSDFAVNVDDICQSRRQPDEISDLTCPPRDEKSTQTKLNSKLSLLGHGPHGRQVVEHLLKEYGEDGIRQFCQRWRQVFVESLKPHFLPAGWDVKH 6302
LQ VK YYGG+++SEEDLE+ALL+G+SPH +RK E+K+G + ++S ++ +D K+ D N DG A F ++T ++S D D E++D C +T + NSKLSLLGHGPHG+Q+VE+LL+E+GEDG+R FCQRWR+VFV+++ P LP GW+V H
Sbjct: 707 LQTVKMYYGGRDLSEEDLEKALLIGLSPHERRKLERKKGVSFKHSA----------------------EVAGMD------------KQEDENN------------------DGEALADFEKIMTVERSTVVDDSGDGTSEGDG-------AKELNDTQC----NGNTLHQQNSKLSLLGHGPHGKQIVEYLLREHGEDGVRDFCQRWRKVFVDAVHPRHLPGGWNVSH 871 HSP 4 Score: 105.531 bits (262), Expect = 2.628e-21 Identity = 61/101 (60.40%), Postives = 73/101 (72.28%), Query Frame = 3
Query: 1179 EFASHSHPFEAEIRALLKNHLPDIE---LRTEITDLEMNDSYVWVDTEMQLKELVSILSKEKLFAVDTEQHGLRSFLGFTALVQVSLFCF*PFVFDCIMLH 1472
E S+ HP+E EI LL+N P IE LR E + LEM+DSYVWV+TE QLKEL IL+KE++FAVDTEQH LRSFLGFTAL+Q+S F+ D I LH
Sbjct: 81 EKPSNGHPYETEITVLLEN--PQIEFGFLRGECS-LEMSDSYVWVETESQLKELAEILAKEQVFAVDTEQHSLRSFLGFTALIQISTHEE-DFLVDTIALH 177 HSP 5 Score: 92.4337 bits (228), Expect = 3.429e-17 Identity = 52/109 (47.71%), Postives = 56/109 (51.38%), Query Frame = 1
Query: 1861 VFHGADNDVIWLQRDFHIYIVNLFDTSKVRY*RYLAMYHTEISTHA**LLEKFSFYN*LAASVLSFHVHVLQACEVLSKPQKSLAYLLETYCSVTTNKLLQV*PDHARP 2187
VFHGADNDVIWLQRDFHIY+VN+FDT+K ACEVLSKPQ+SLAYLLET C V TNKLLQ RP
Sbjct: 195 VFHGADNDVIWLQRDFHIYVVNMFDTAK--------------------------------------------ACEVLSKPQRSLAYLLETVCGVATNKLLQREDWRQRP 259 HSP 6 Score: 72.4034 bits (176), Expect = 3.734e-11 Identity = 35/46 (76.09%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 2836 REDWRQRPLSEEMVEYARMDAHYLLYIANCLITELKEL---DSGMP 2964
REDWRQRPLSEEMV YAR DAHYLLYIA+ L TELK+L DS P
Sbjct: 252 REDWRQRPLSEEMVRYARTDAHYLLYIADSLTTELKQLATEDSSSP 297 HSP 7 Score: 51.6026 bits (122), Expect = 1.550e-7 Identity = 32/56 (57.14%), Postives = 46/56 (82.14%), Query Frame = 3
Query: 3378 LVSEDSCS-NDKYHFVLEATRRSNMICLQLFTKXXXXXXXXXXXXXXXXRHVSSEG 3542
L +EDS S +D++HF+LEA+RRSNM CLQL+TKE+E PG +A+SS++ RH++ G
Sbjct: 289 LATEDSSSPDDRFHFLLEASRRSNMTCLQLYTKETEDFPGSAASSSIIYRHLNGHG 344 HSP 8 Score: 28.4906 bits (62), Expect = 1.550e-7 Identity = 9/14 (64.29%), Postives = 12/14 (85.71%), Query Frame = 1
Query: 3655 QNIVRQLCTWRDLM 3696
+ +VR+LC WRDLM
Sbjct: 354 EELVRKLCAWRDLM 367 HSP 9 Score: 60.077 bits (144), Expect = 2.677e-7 Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 2
Query: 1505 FNVIKQISTQEKDYLVDTIALHDSMGILRPVFANSSICKV 1624
F + QIST E+D+LVDTIALHD M ILRPVF++ +ICKV
Sbjct: 156 FTALIQISTHEEDFLVDTIALHDVMSILRPVFSDPNICKV 195 HSP 10 Score: 58.5362 bits (140), Expect = 7.456e-7 Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 1
Query: 124 CYLHSEPKPQRVFKRVLADNSYAQFKHLKLNDSTS 228
CYLHSE KPQ FKRVLADNSY++FKHLKL D++S
Sbjct: 43 CYLHSELKPQFGFKRVLADNSYSEFKHLKLVDASS 77
BLAST of rna-TanjilR_07226 vs. DB:Swiss
Match: EXD2_HUMAN (Exonuclease 3'-5' domain-containing protein 2 OS=Homo sapiens OX=9606 GN=EXD2 PE=1 SV=2) HSP 1 Score: 105.916 bits (263), Expect = 6.017e-28 Identity = 58/168 (34.52%), Postives = 93/168 (55.36%), Query Frame = 3
Query: 4839 YVSRDLAKVVEEDPPAITLLFEPKGRPEDEDNDFYIQSKKNMCVGCGEGNHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHASAEKYKRKIASEFGIPL----YVRRVIHPXXXXXXXXXXXXVSPLQLRTAAMALLRHGPRMPPNRREELTEV*SYFF 5330
Y+ + + ++V E+P + L FEP GRPE D+Y+ K+N+CV CG+ + Y+R +IP YR HFP +K H SHD++LLC CH +++ K+++A EF P+ +R + P + Q+R+ A ALL + +P R+EEL + F+
Sbjct: 379 YLDKGIGELVSEEPFVVKLRFEPAGRPESP-GDYYLMVKENLCVVCGKRDSYIRKNVIPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLRLLEDPERR-------------QVRSGARALL-NAESLPTQRKEELLQALREFY 531 HSP 2 Score: 43.5134 bits (101), Expect = 6.017e-28 Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1
Query: 4615 KNPKRISRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEW 4761
++P++ RK L V + KSP+Y NC + A DG+ LC CDR+K +W
Sbjct: 333 RDPRKHKRKP---LGVGYSARKSPLYDNCFLHAPDGQPLCTCDRRKAQW 378
BLAST of rna-TanjilR_07226 vs. DB:Swiss
Match: EXD2_MOUSE (Exonuclease 3'-5' domain-containing protein 2 OS=Mus musculus OX=10090 GN=Exd2 PE=1 SV=2) HSP 1 Score: 104.76 bits (260), Expect = 2.019e-27 Identity = 56/164 (34.15%), Postives = 90/164 (54.88%), Query Frame = 3
Query: 4839 YVSRDLAKVVEEDPPAITLLFEPKGRPEDEDNDFYIQSKKNMCVGCGEGNHYLRYRIIPSCYRVHFPEHLKSHRSHDIVLLCVDCHEVAHASAEKYKRKIASEFGIPLYVRRVIHPXXXXXXXXXXXXVSPLQLRTAAMALLRHGPRMPPNRREELTEV*SYFF 5330
Y+ + + ++V ++P + L FEP GRPE D+Y+ K+N+CV CG+ + Y+R IIP YR HFP +K H SHD++LLC CH +++ K+++A EF P+ + + Q+R+ A ALL + +P +R+EEL F+
Sbjct: 408 YLDKGIGELVSKEPFVVRLQFEPAGRPESP-GDYYLMVKENLCVVCGKTDTYIRKNIIPHEYRKHFPIEMKDHNSHDVLLLCTSCHAISNYYDNHLKQQLAKEFQAPIGSEEGLR---------LLEDLERRQVRSGARALL-NAESLPAHRKEELLHALREFY 560 HSP 2 Score: 42.743 bits (99), Expect = 2.019e-27 Identity = 21/49 (42.86%), Postives = 31/49 (63.27%), Query Frame = 1
Query: 4615 KNPKRISRKASRDLFVQKFSCKSPVYHNCRIFANDGRLLCYCDRKKLEW 4761
++P++ RK L V + KSP+Y NC + A DG+ LC CDR+K +W
Sbjct: 362 RDPRKHKRKP---LGVGYSARKSPLYDNCFLQAPDGQPLCTCDRRKAQW 407
BLAST of rna-TanjilR_07226 vs. DB:Swiss
Match: RRP6_YEAST (Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=RRP6 PE=1 SV=1) HSP 1 Score: 52.373 bits (124), Expect = 6.485e-13 Identity = 30/81 (37.04%), Postives = 46/81 (56.79%), Query Frame = 3
Query: 1191 HSHPFEAEIRALLKNHLPDI-ELRTEITDLEMNDSY-VWVDTEMQLKELVSILSKEKLFAVDTEQHGLRSFLGFTALVQVS 1427
+ HP+E EI + + P+I ++R EI +DS +WVDT +L+ ++ L K AVD E H RS+ G L+Q+S
Sbjct: 179 YPHPYEYEIDH--QEYSPEILQIREEIPSKSWDDSVPIWVDTSTELESMLEDLKNTKEIAVDLEHHDYRSYYGIVCLMQIS 257 HSP 2 Score: 46.2098 bits (108), Expect = 6.485e-13 Identity = 21/35 (60.00%), Postives = 27/35 (77.14%), Query Frame = 2
Query: 1520 QISTQEKDYLVDTIALHDSMGILRPVFANSSICKV 1624
QIST+E+DYLVDT+ L +++ IL VF N SI KV
Sbjct: 255 QISTRERDYLVDTLKLRENLHILNEVFTNPSIVKV 289
BLAST of rna-TanjilR_07226 vs. DB:Swiss
Match: RRP6_SCHPO (Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=rrp6 PE=3 SV=2) HSP 1 Score: 49.2914 bits (116), Expect = 4.792e-7 Identity = 29/79 (36.71%), Postives = 45/79 (56.96%), Query Frame = 3
Query: 1197 HPFEAEIRALLKNHLPDI-ELRTEITDLEMNDS-YVWVDTEMQLKELVSILSKEKLFAVDTEQHGLRSFLGFTALVQVS 1427
HP+E EI+ + + P + E+ I ++++ +WV TE QL +++ L K AVD E H RSF GF L+Q+S
Sbjct: 186 HPYEPEIQNSV--YPPWVSEMSNPIDTGSVDETEPIWVSTESQLSDMLKELQNSKEIAVDLEHHDYRSFRGFVCLMQIS 262 HSP 2 Score: 29.6462 bits (65), Expect = 4.792e-7 Identity = 17/35 (48.57%), Postives = 24/35 (68.57%), Query Frame = 2
Query: 1520 QISTQEKDYLVDTIALHDSMGILRPVFANSSICKV 1624
QIS +EKD++VDT+ L + + L VF N +I KV
Sbjct: 260 QISNREKDWIVDTLELREELEALNVVFTNPNIIKV 294 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_07226 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 5
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_07226_La_Tanjil_v1.0 ID=rna-TanjilR_07226_La_Tanjil_v1.0; Name=rna-TanjilR_07226; organism=Lupinus angustifolius; type=mRNA; length=6329bpback to top protein sequence of rna-TanjilR_07226_La_Tanjil_v1.0 >rna-TanjilR_07226_La_Tanjil_v1.0 ID=rna-TanjilR_07226_La_Tanjil_v1.0; Name=rna-TanjilR_07226_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=909bpback to top mRNA from alignment at Chr_LG08-CM007368.1:22521736..22528064- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_07226_La_Tanjil_v1.0 ID=rna-TanjilR_07226_La_Tanjil_v1.0; Name=rna-TanjilR_07226; organism=Lupinus angustifolius; type=mRNA; length=6329bp; location=Sequence derived from: Chr_LG08-CM007368.1:22521736..22528064- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:22521736..22528064- >rna-TanjilR_07226_La_Tanjil_v1.0 ID=rna-TanjilR_07226_La_Tanjil_v1.0; Name=rna-TanjilR_07226; organism=Lupinus angustifolius; type=CDS; length=2730bp; location=Sequence derived from: Chr_LG08-CM007368.1:22521736..22528064- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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