rna-TanjilR_23606
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: KINB3_ARATH (SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana OX=3702 GN=KINB3 PE=1 SV=1) HSP 1 Score: 134.806 bits (338), Expect = 1.153e-40 Identity = 69/106 (65.09%), Postives = 83/106 (78.30%), Query Frame = 3 Query: 102 EEPTVVGFEVPKSPDSSYNNVYTGHEDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPL---PQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPVQR 410 E+ TVVGFEVP SP SSYNNVY+ EDE R+PP P HLQH+LL + GS+ L PQNV+LNHLYIENR++ RSVVALG++HRFR+K+VTVV+YKPVQR Sbjct: 10 EDTTVVGFEVPVSPVSSYNNVYSSTEDETRDPPAVPPHLQHSLLG-------NQGSMELAYAPQNVVLNHLYIENRDAPRSVVALGFSHRFRTKFVTVVIYKPVQR 108
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: KINB2_ARATH (SNF1-related protein kinase regulatory subunit beta-2 OS=Arabidopsis thaliana OX=3702 GN=KINB2 PE=1 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 2.543e-32 Identity = 61/118 (51.69%), Postives = 85/118 (72.03%), Query Frame = 3 Query: 57 NYLSVVGLKDTIHSQEEPTVVGFEVPKSPDSSYNNVYTGHEDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPVQR 410 N +++ L+D + ++ ++ GFE P+SP++SY+N+ G ED ++EPP P HLQ TLL+ PA + D LP PQ+VILNHLY++ +S SVVALG THRF +KYVTVVLYK +QR Sbjct: 173 NTFNILDLQDYV-PEDIQSISGFEPPQSPENSYSNLLLGAEDYSKEPPVVPPHLQMTLLNLPAANPDIPSPLPRPQHVILNHLYMQKGKSGPSVVALGSTHRFLAKYVTVVLYKSLQR 289
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: KINB1_ARATH (SNF1-related protein kinase regulatory subunit beta-1 OS=Arabidopsis thaliana OX=3702 GN=KINB1 PE=1 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 6.667e-21 Identity = 47/100 (47.00%), Postives = 62/100 (62.00%), Query Frame = 3 Query: 111 TVVGFEVPKSPDSSYNNVYTGHEDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPVQR 410 ++V FE P SPD SY ED A+EP P L TLL + + + PQ+V+LNH++IE + +S+VALG THRF SKY+TVVLYKP+ R Sbjct: 188 SIVEFEAPPSPDHSYGQTLPAAEDYAKEPLAVPPQLHLTLLG----TTEETAIATKPQHVVLNHVFIEQGWTPQSIVALGLTHRFESKYITVVLYKPLTR 283
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: AAKB2_RAT (5'-AMP-activated protein kinase subunit beta-2 OS=Rattus norvegicus OX=10116 GN=Prkab2 PE=1 SV=1) HSP 1 Score: 59.3066 bits (142), Expect = 3.758e-10 Identity = 31/76 (40.79%), Postives = 43/76 (56.58%), Query Frame = 3 Query: 177 EDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPV 404 E+ + PP P HL +L+ N LP P +V+LNHLY + SV+ L THR++ KYVT +LYKP+ Sbjct: 198 EERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYA--LSTKDSVMVLSATHRYKKKYVTTLLYKPI 271
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: AAKB2_HUMAN (5'-AMP-activated protein kinase subunit beta-2 OS=Homo sapiens OX=9606 GN=PRKAB2 PE=1 SV=1) HSP 1 Score: 58.9214 bits (141), Expect = 6.290e-10 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 3 Query: 177 EDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPV 404 E+ + PP P HL +L+ N LP P +V+LNHLY + + SV+ L THR++ KYVT +LYKP+ Sbjct: 199 EERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYKPI 272
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: AAKB2_MOUSE (5'-AMP-activated protein kinase subunit beta-2 OS=Mus musculus OX=10090 GN=Prkab2 PE=1 SV=1) HSP 1 Score: 58.5362 bits (140), Expect = 6.508e-10 Identity = 31/76 (40.79%), Postives = 44/76 (57.89%), Query Frame = 3 Query: 177 EDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPV 404 E+ + PP P HL +L+ N LP P +V+LNHLY + + SV+ L THR++ KYVT +LYKP+ Sbjct: 198 EERFKSPPILPPHLLQVILNKDTNISCDPALLPEPNHVMLNHLYALSIKD--SVMVLSATHRYKKKYVTTLLYKPI 271
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: AAKB1_PONAB (5'-AMP-activated protein kinase subunit beta-1 OS=Pongo abelii OX=9601 GN=PRKAB1 PE=2 SV=3) HSP 1 Score: 56.225 bits (134), Expect = 5.075e-9 Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 3 Query: 177 EDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPV 404 E+ R PP P HL +L+ LP P +V+LNHLY + + V+ L THR++ KYVT +LYKP+ Sbjct: 197 EERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKD--GVMVLSATHRYKKKYVTTLLYKPI 270
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: AAKB1_HUMAN (5'-AMP-activated protein kinase subunit beta-1 OS=Homo sapiens OX=9606 GN=PRKAB1 PE=1 SV=4) HSP 1 Score: 56.225 bits (134), Expect = 5.125e-9 Identity = 30/76 (39.47%), Postives = 42/76 (55.26%), Query Frame = 3 Query: 177 EDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPV 404 E+ R PP P HL +L+ LP P +V+LNHLY + + V+ L THR++ KYVT +LYKP+ Sbjct: 197 EERFRAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKD--GVMVLSATHRYKKKYVTTLLYKPI 270
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: AAKB1_RAT (5'-AMP-activated protein kinase subunit beta-1 OS=Rattus norvegicus OX=10116 GN=Prkab1 PE=1 SV=4) HSP 1 Score: 55.0694 bits (131), Expect = 1.340e-8 Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 3 Query: 177 EDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPV 404 E+ + PP P HL +L+ LP P +V+LNHLY + + V+ L THR++ KYVT +LYKP+ Sbjct: 197 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKD--GVMVLSATHRYKKKYVTTLLYKPI 270
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Match: AAKB1_MOUSE (5'-AMP-activated protein kinase subunit beta-1 OS=Mus musculus OX=10090 GN=Prkab1 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 1.524e-8 Identity = 29/76 (38.16%), Postives = 42/76 (55.26%), Query Frame = 3 Query: 177 EDEAREPPFAPFHLQHTLLSYPANSGDSSGSLPLPQNVILNHLYIENRESSRSVVALGYTHRFRSKYVTVVLYKPV 404 E+ + PP P HL +L+ LP P +V+LNHLY + + V+ L THR++ KYVT +LYKP+ Sbjct: 197 EERFKAPPILPPHLLQVILNKDTGISCDPALLPEPNHVMLNHLYALSIKD--GVMVLSATHRYKKKYVTTLLYKPI 270 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23606 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23606_La_Tanjil_v1.0 ID=rna-TanjilR_23606_La_Tanjil_v1.0; Name=rna-TanjilR_23606; organism=Lupinus angustifolius; type=mRNA; length=416bpback to top protein sequence of rna-TanjilR_23606_La_Tanjil_v1.0 >rna-TanjilR_23606_La_Tanjil_v1.0 ID=rna-TanjilR_23606_La_Tanjil_v1.0; Name=rna-TanjilR_23606_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=113bpback to top mRNA from alignment at Chr_LG08-CM007368.1:23477915..23478330- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_23606_La_Tanjil_v1.0 ID=rna-TanjilR_23606_La_Tanjil_v1.0; Name=rna-TanjilR_23606; organism=Lupinus angustifolius; type=mRNA; length=416bp; location=Sequence derived from: Chr_LG08-CM007368.1:23477915..23478330- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:23477915..23478330- >rna-TanjilR_23606_La_Tanjil_v1.0 ID=rna-TanjilR_23606_La_Tanjil_v1.0; Name=rna-TanjilR_23606; organism=Lupinus angustifolius; type=CDS; length=342bp; location=Sequence derived from: Chr_LG08-CM007368.1:23477915..23478330- (Lupinus angustifoliusback to top |