rna-TanjilR_23583
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD13_ARATH (Protein indeterminate-domain 13 OS=Arabidopsis thaliana OX=3702 GN=IDD13 PE=2 SV=1) HSP 1 Score: 238.81 bits (608), Expect = 1.215e-71 Identity = 104/120 (86.67%), Postives = 115/120 (95.83%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRF CEICNKGFQREQNLQLH+RGHNLPWKLKQ+ N +QV+KKVY+CPEKSCVHHDP RALGDLTGIKKH+SRKHGEKKWKC+KCS+KYAV SDWKAHNKICG+RE++CDCGTLFSR
Sbjct: 59 MATNRFFCEICNKGFQREQNLQLHKRGHNLPWKLKQKTNKNQVKKKVYICPEKSCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVISDWKAHNKICGSREFRCDCGTLFSR 178
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD9_ARATH (Zinc finger protein BALDIBIS OS=Arabidopsis thaliana OX=3702 GN=BIB PE=1 SV=1) HSP 1 Score: 234.572 bits (597), Expect = 3.513e-70 Identity = 102/120 (85.00%), Postives = 115/120 (95.83%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
M TNRFICE+CNKGF+R+QNLQLHRRGHNLPWKLKQR N +QV+KKVY+CPEK+CVHHDP RALGDLTGIKKH+SRKHGEKKWKC+KCS+KYAV SDWKAH+KICGT+EY+CDCGTLFSR
Sbjct: 63 MTTNRFICEVCNKGFKRDQNLQLHRRGHNLPWKLKQRTNKEQVKKKVYICPEKTCVHHDPARALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVMSDWKAHSKICGTKEYRCDCGTLFSR 182
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD2_ARATH (Zinc finger protein GAI-ASSOCIATED FACTOR 1 OS=Arabidopsis thaliana OX=3702 GN=GAF1 PE=1 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 3.154e-69 Identity = 102/120 (85.00%), Postives = 115/120 (95.83%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
+ATNRF+CEICNKGFQR+QNLQLHRRGHNLPWKL+Q+ +N +V+KKVYVCPE SCVHHDP RALGDLTGIKKH+ RKHGEKKWKC+KCS+KYAVQSDWKAH+KICGT+EYKCDCGTLFSR
Sbjct: 58 LATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQK-SNKEVKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSR 176
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD7_ARATH (Protein indeterminate-domain 7 OS=Arabidopsis thaliana OX=3702 GN=IDD7 PE=2 SV=1) HSP 1 Score: 232.261 bits (591), Expect = 3.630e-69 Identity = 104/120 (86.67%), Postives = 110/120 (91.67%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRFICE+CNKGFQR+QNLQLH+RGHNLPWKLKQR N D VRKKVYVCPE CVHH P RALGDLTGIKKH+ RKHGEKKWKCEKCS+KYAVQSDWKAH K CGT+EYKCDCGTLFSR
Sbjct: 87 MATNRFICEVCNKGFQRDQNLQLHKRGHNLPWKLKQRSNKDVVRKKVYVCPEPGCVHHHPSRALGDLTGIKKHFFRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTKEYKCDCGTLFSR 206
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD10_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana OX=3702 GN=JKD PE=1 SV=1) HSP 1 Score: 233.417 bits (594), Expect = 4.056e-69 Identity = 103/120 (85.83%), Postives = 111/120 (92.50%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRF+CEICNKGFQR+QNLQLHRRGHNLPWKLKQR + ++KKVY+CP K+CVHHD RALGDLTGIKKHYSRKHGEKKWKCEKCS+KYAVQSDWKAH K CGTREYKCDCGTLFSR
Sbjct: 77 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSR 196
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD1_ARATH (Zinc finger protein ENHYDROUS OS=Arabidopsis thaliana OX=3702 GN=ENY PE=1 SV=1) HSP 1 Score: 232.646 bits (592), Expect = 8.567e-69 Identity = 103/120 (85.83%), Postives = 112/120 (93.33%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRF+CEICNKGFQR+QNLQLHRRGHNLPWKL+QR + +VRKKVYVCP CVHHDP RALGDLTGIKKH+ RKHGEKKWKCEKCS+KYAVQSDWKAH+KICGT+EYKCDCGTLFSR
Sbjct: 56 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQR-STKEVRKKVYVCPVSGCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSR 174
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD6_ARATH (Protein indeterminate-domain 6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD6 PE=1 SV=1) HSP 1 Score: 228.794 bits (582), Expect = 1.080e-67 Identity = 100/120 (83.33%), Postives = 113/120 (94.17%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRF+CE+CNKGFQREQNLQLHRRGHNLPWKLKQ+ N +VR+KVY+CPE SCVHHDP RALGDLTGIKKHY RKHGEKKWKC+KCS++YAVQSDWKAH+K CGT+EY+CDCGT+FSR
Sbjct: 77 MATNRFLCEVCNKGFQREQNLQLHRRGHNLPWKLKQKSN-KEVRRKVYLCPEPSCVHHDPARALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSR 195
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD11_ARATH (Protein indeterminate-domain 11 OS=Arabidopsis thaliana OX=3702 GN=IDD11 PE=2 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.811e-67 Identity = 102/120 (85.00%), Postives = 112/120 (93.33%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRF+CEICNKGFQR+QNLQLHRRGHNLPWKLKQR N + +RKKVYVCPE SCVHHDP RALGDLTGIKKH+ RKHGEKKWKC+KCS+KYAVQSD KAH+K CGT+EY+CDCGTLFSR
Sbjct: 94 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDCKAHSKTCGTKEYRCDCGTLFSR 213
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD4_ARATH (Protein indeterminate-domain 4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD4 PE=1 SV=1) HSP 1 Score: 226.483 bits (576), Expect = 2.666e-66 Identity = 98/120 (81.67%), Postives = 112/120 (93.33%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRFIC++CNKGFQREQNLQLHRRGHNLPWKLKQ+ +V++KVY+CPE +CVHHDP RALGDLTGIKKHY RKHGEKKWKCEKCS++YAVQSDWKAH+K CGT+EY+CDCGT+FSR
Sbjct: 78 MATNRFICDVCNKGFQREQNLQLHRRGHNLPWKLKQKST-KEVKRKVYLCPEPTCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTIFSR 196
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Match: IDD5_ARATH (Protein indeterminate-domain 5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=IDD5 PE=1 SV=1) HSP 1 Score: 228.024 bits (580), Expect = 4.405e-66 Identity = 100/120 (83.33%), Postives = 112/120 (93.33%), Query Frame = 1 Query: 1 MATNRFICEICNKGFQREQNLQLHRRGHNLPWKLKQRENNDQVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHYSRKHGEKKWKCEKCSRKYAVQSDWKAHNKICGTREYKCDCGTLFSR 360
MATNRFICE+CNKGFQREQNLQLHRRGHNLPWKLKQ+ +V++KVY+CPE SCVHHDP RALGDLTGIKKHY RKHGEKKWKC+KCS++YAVQSDWKAH+K CGT+EY+CDCGTLFSR
Sbjct: 76 MATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKST-KEVKRKVYLCPEPSCVHHDPSRALGDLTGIKKHYYRKHGEKKWKCDKCSKRYAVQSDWKAHSKTCGTKEYRCDCGTLFSR 194 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23583 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23583_La_Tanjil_v1.0 ID=rna-TanjilR_23583_La_Tanjil_v1.0; Name=rna-TanjilR_23583; organism=Lupinus angustifolius; type=mRNA; length=1576bpback to top protein sequence of rna-TanjilR_23583_La_Tanjil_v1.0 >rna-TanjilR_23583_La_Tanjil_v1.0 ID=rna-TanjilR_23583_La_Tanjil_v1.0; Name=rna-TanjilR_23583_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=429bpback to top mRNA from alignment at Chr_LG08-CM007368.1:23695967..23697542- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_23583_La_Tanjil_v1.0 ID=rna-TanjilR_23583_La_Tanjil_v1.0; Name=rna-TanjilR_23583; organism=Lupinus angustifolius; type=mRNA; length=1576bp; location=Sequence derived from: Chr_LG08-CM007368.1:23695967..23697542- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:23695967..23697542- >rna-TanjilR_23583_La_Tanjil_v1.0 ID=rna-TanjilR_23583_La_Tanjil_v1.0; Name=rna-TanjilR_23583; organism=Lupinus angustifolius; type=CDS; length=1290bp; location=Sequence derived from: Chr_LG08-CM007368.1:23695967..23697542- (Lupinus angustifoliusback to top |