rna-TanjilR_23540
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_ORYSJ (Mitochondrial import inner membrane translocase subunit Tim9 OS=Oryza sativa subsp. japonica OX=39947 GN=TIM9 PE=3 SV=2) HSP 1 Score: 117.857 bits (294), Expect = 1.923e-31 Identity = 53/62 (85.48%), Postives = 58/62 (93.55%), Query Frame = 1 Query: 961 SLRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELNQGAATQD 1146 SLRMYNSLVERCFTDCVDTF+ K+L KQEE+C+RRCAEKFLKHSMRVG+RFAELNQG AT D Sbjct: 32 SLRMYNSLVERCFTDCVDTFRRKTLDKQEESCVRRCAEKFLKHSMRVGMRFAELNQGVATPD 93 HSP 2 Score: 56.6102 bits (135), Expect = 5.184e-9 Identity = 25/31 (80.65%), Postives = 27/31 (87.10%), Query Frame = 1 Query: 1 MDKSMLGDLDSLPEADKQRMSTMIDQLQIRD 93 MDKSMLGDLD LPE DK RM+ M+DQLQIRD Sbjct: 1 MDKSMLGDLDGLPEEDKMRMAAMVDQLQIRD 31
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_MESCR (Mitochondrial import inner membrane translocase subunit Tim9 OS=Mesembryanthemum crystallinum OX=3544 GN=TIM9 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 3.050e-31 Identity = 53/62 (85.48%), Postives = 59/62 (95.16%), Query Frame = 1 Query: 961 SLRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELNQGAATQD 1146 SLRMYN+LVERCFTDCVD+F+ K+L KQEETC++RCAEKFLKHSMRVGLRFAELNQGAAT D Sbjct: 32 SLRMYNNLVERCFTDCVDSFRRKTLDKQEETCVKRCAEKFLKHSMRVGLRFAELNQGAATTD 93 HSP 2 Score: 53.1434 bits (126), Expect = 7.103e-8 Identity = 23/31 (74.19%), Postives = 29/31 (93.55%), Query Frame = 1 Query: 1 MDKSMLGDLDSLPEADKQRMSTMIDQLQIRD 93 MDK+MLGDLD+LPE DK +M++MI+QLQIRD Sbjct: 1 MDKNMLGDLDNLPEEDKLKMASMIEQLQIRD 31
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_ARATH (Mitochondrial import inner membrane translocase subunit TIM9 OS=Arabidopsis thaliana OX=3702 GN=TIM9 PE=1 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 1.839e-29 Identity = 51/62 (82.26%), Postives = 55/62 (88.71%), Query Frame = 1 Query: 961 SLRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELNQGAATQD 1146 SLRMYNSLVERCF DCVD+F KSL KQEETC+ RCAEKFLKH+MRVG+RFAELNQ A TQD Sbjct: 32 SLRMYNSLVERCFVDCVDSFTRKSLQKQEETCVMRCAEKFLKHTMRVGMRFAELNQNAPTQD 93
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_ZYGBA (Mitochondrial import inner membrane translocase subunit Tim9 OS=Zygosaccharomyces bailii OX=4954 GN=TIM9 PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.573e-17 Identity = 36/54 (66.67%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 964 LRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELN 1125 +R+Y++LVERCFTDCV+ F LT +E+TCI RC+EKFLKHS RVGLRF E N Sbjct: 25 MRLYSNLVERCFTDCVNDFTSSKLTSKEQTCISRCSEKFLKHSERVGLRFQEQN 78
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_YARLI (Mitochondrial import inner membrane translocase subunit TIM9 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) OX=284591 GN=TIM9 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 1.364e-16 Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 1 Query: 964 LRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELN 1125 +R+Y+SLV+RCFTDCV+ F K+L+ +EE+C+ +C+EKFLKHS RVG RF E N Sbjct: 25 MRLYSSLVQRCFTDCVNDFTSKALSSREESCLEKCSEKFLKHSERVGQRFQEQN 78
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_ASHGO (Mitochondrial import inner membrane translocase subunit TIM9 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) OX=284811 GN=TIM9 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 2.570e-16 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 964 LRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELN 1125 +R+Y++LVERCF+DCV+ F LT +E+TCI RC+EKFLKHS RVG RF E N Sbjct: 25 MRLYSNLVERCFSDCVNDFTSSKLTSKEQTCIMRCSEKFLKHSERVGQRFQEQN 78
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_YEAST (Mitochondrial import inner membrane translocase subunit TIM9 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TIM9 PE=1 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 3.537e-16 Identity = 34/54 (62.96%), Postives = 43/54 (79.63%), Query Frame = 1 Query: 964 LRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELN 1125 +R+Y++LVERCFTDCV+ F LT +E+TCI +C+EKFLKHS RVG RF E N Sbjct: 25 MRLYSNLVERCFTDCVNDFTTSKLTNKEQTCIMKCSEKFLKHSERVGQRFQEQN 78
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_CANGA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) OX=284593 GN=TIM9 PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 3.793e-16 Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1 Query: 964 LRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELN 1125 +R+Y+ LVERCFTDCV+ F LT +EE+CI +C+EKFLKHS RVG RF E N Sbjct: 25 MRLYSGLVERCFTDCVNDFTSSKLTSKEESCILKCSEKFLKHSERVGQRFQEQN 78
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_KLULA (Mitochondrial import inner membrane translocase subunit TIM9 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) OX=284590 GN=TIM9 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 1.206e-15 Identity = 33/54 (61.11%), Postives = 42/54 (77.78%), Query Frame = 1 Query: 964 LRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELN 1125 +R+Y++LVERCF+DCV+ F LT +E+ CI RC+EKFLKHS RVG RF E N Sbjct: 25 MRLYSNLVERCFSDCVNDFTSAKLTSKEQNCIMRCSEKFLKHSERVGQRFQEQN 78
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Match: TIM9_CANAL (Mitochondrial import inner membrane translocase subunit TIM9 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=TIM9 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 4.178e-14 Identity = 31/54 (57.41%), Postives = 40/54 (74.07%), Query Frame = 1 Query: 964 LRMYNSLVERCFTDCVDTFKHKSLTKQEETCIRRCAEKFLKHSMRVGLRFAELN 1125 + +Y++LV RCF DCV+ F SLT +E +CI +C+EKFLKHS RVG RF E N Sbjct: 25 MNLYSNLVSRCFDDCVNDFTSNSLTSKETSCIAKCSEKFLKHSERVGQRFQEQN 78 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23540 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23540_La_Tanjil_v1.0 ID=rna-TanjilR_23540_La_Tanjil_v1.0; Name=rna-TanjilR_23540; organism=Lupinus angustifolius; type=mRNA; length=1149bpback to top protein sequence of rna-TanjilR_23540_La_Tanjil_v1.0 >rna-TanjilR_23540_La_Tanjil_v1.0 ID=rna-TanjilR_23540_La_Tanjil_v1.0; Name=rna-TanjilR_23540_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=93bpback to top mRNA from alignment at Chr_LG08-CM007368.1:24021151..24022299+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_23540_La_Tanjil_v1.0 ID=rna-TanjilR_23540_La_Tanjil_v1.0; Name=rna-TanjilR_23540; organism=Lupinus angustifolius; type=mRNA; length=1149bp; location=Sequence derived from: Chr_LG08-CM007368.1:24021151..24022299+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24021151..24022299+ >rna-TanjilR_23540_La_Tanjil_v1.0 ID=rna-TanjilR_23540_La_Tanjil_v1.0; Name=rna-TanjilR_23540; organism=Lupinus angustifolius; type=CDS; length=282bp; location=Sequence derived from: Chr_LG08-CM007368.1:24021151..24022299+ (Lupinus angustifoliusback to top |