rna-TanjilR_23536
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: RBL1_ARATH (RHOMBOID-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBL1 PE=2 SV=1) HSP 1 Score: 100.523 bits (249), Expect = 1.103e-20 Identity = 46/65 (70.77%), Postives = 54/65 (83.08%), Query Frame = 3 Query: 3297 RPFKRWFPWLVPSFVVANVALFVITMYKNNCPKHSFPDSCFANFLGRFSFQPLKQNPLLGPSSST 3491
RPFK WFPWLVP+ VVAN+ALF I+M+ NNCPK+S C A FLGRF+FQP+K+NPLLGPSS T
Sbjct: 49 RPFKLWFPWLVPAIVVANIALFAISMFINNCPKNS--AYCLARFLGRFAFQPMKENPLLGPSSLT 111 HSP 2 Score: 95.9005 bits (237), Expect = 4.089e-19 Identity = 43/54 (79.63%), Postives = 48/54 (88.89%), Query Frame = 2 Query: 4091 LENMGALQVDKVVHRHQVWRLFSCVWLHGGVVHVLANMLSLVFIGIRLEQEFGF 4252
LE MGAL V VVH+H+VWRLF+C+WLH GV HVLANMLSL+FIGIRLEQEFGF
Sbjct: 112 LEKMGALDVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGF 165 HSP 3 Score: 87.4261 bits (215), Expect = 7.163e-19 Identity = 60/86 (69.77%), Postives = 68/86 (79.07%), Query Frame = 1 Query: 5116 AALSTLIVIIVINLAVGILPHMDNFAHXXXXXXXXXXXXXXXXRPQYKWVSQRNSSSRYVS-RPNSKHKPIQYVLWVISFILLCAG 5370
AAL TLI II INLAVGILPH+DNFAH+GGF SGFLLGFVFLIRPQY + +QRN+ Y + SKHKP QYVLW+ S +LL AG
Sbjct: 222 AALLTLIFIIAINLAVGILPHVDNFAHLGGFTSGFLLGFVFLIRPQYGYFNQRNNPRGYAAPSAKSKHKPYQYVLWITSLVLLIAG 307 HSP 4 Score: 31.5722 bits (70), Expect = 7.163e-19 Identity = 53/66 (80.30%), Postives = 58/66 (87.88%), Query Frame = 3 Query: 4818 FYAVRIGLLYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLTNWTIYANKVNNKMNLL 5015
F VRIGLLY+ISGFGGSLLSSLF ++GISVGASGALFGLLGAMLSELLTNWTIYANK + L+
Sbjct: 163 FGFVRIGLLYMISGFGGSLLSSLFNRAGISVGASGALFGLLGAMLSELLTNWTIYANKFAALLTLI 228 HSP 5 Score: 80.4925 bits (197), Expect = 3.920e-14 Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1 Query: 6289 LLDRLVAGTVLLLRGVDLNDHCSWCHYLSCVPTSKWSCKPQEVYCE 6426
L+ AG V+LLRG DLN HCSWCHYLSC+PTS WSCK Q VYCE
Sbjct: 304 LIAGYTAGLVVLLRGTDLNKHCSWCHYLSCIPTSLWSCKSQNVYCE 349
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: RBL2_ARATH (RHOMBOID-like protein 2 OS=Arabidopsis thaliana OX=3702 GN=RBL2 PE=1 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 6.085e-17 Identity = 39/54 (72.22%), Postives = 46/54 (85.19%), Query Frame = 2 Query: 4091 LENMGALQVDKVVHRHQVWRLFSCVWLHGGVVHVLANMLSLVFIGIRLEQEFGF 4252
LE MGAL+ KVVH HQ WRL SC+WLH G++H+L NMLSL+FIGIRLEQ+FGF
Sbjct: 93 LEKMGALEWRKVVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQFGF 146 HSP 2 Score: 80.4925 bits (197), Expect = 1.629e-14 Identity = 40/72 (55.56%), Postives = 52/72 (72.22%), Query Frame = 3 Query: 3282 GDSHSRPFKRWFPWLVPSFVVANVALFVITMYKNNCPKH-SFPD-SCFANFLGRFSFQPLKQNPLLGPSSST 3491
G++H W WL+P+ VVAN+A+F+ M+ N+CPK + P+ C A FLGRFSFQPLK+NPL GPSSST
Sbjct: 27 GETH------WTSWLIPAIVVANLAVFIAVMFVNDCPKKITGPNKECVARFLGRFSFQPLKENPLFGPSSST 92 HSP 3 Score: 56.225 bits (134), Expect = 7.163e-10 Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 1 Query: 5110 QCAALSTLIVIIVINLAVGILPHMDNFAHXXXXXXXXXXXXXXXXRPQYKWVSQRNSSSR 5289
+ AAL TL+ II INLA+G+LP +DNFAHIGGF++GF LGFV L+RPQY W + R ++SR
Sbjct: 201 KAAALITLLFIIAINLALGMLPRVDNFAHIGGFLTGFCLGFVLLVRPQYGWEASRTNTSR 260 HSP 4 Score: 32.3426 bits (72), Expect = 7.163e-10 Identity = 49/66 (74.24%), Postives = 56/66 (84.85%), Query Frame = 3 Query: 4818 FYAVRIGLLYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLTNWTIYANKVNNKMNLL 5015
F +R+GL+Y+ISG GGS+LSSLF+Q ISVGASGALFGLLGAMLSELLTNWTIYANK + LL
Sbjct: 144 FGFIRVGLIYLISGLGGSILSSLFLQESISVGASGALFGLLGAMLSELLTNWTIYANKAAALITLL 209
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: MUR3_ARATH (Xyloglucan galactosyltransferase MUR3 OS=Arabidopsis thaliana OX=3702 GN=MUR3 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.534e-15 Identity = 44/109 (40.37%), Postives = 67/109 (61.47%), Query Frame = -1 Query: 1359 RITWDFRRVNATYYVFISEKDVQDGKVSIERILSEIPKAKVKFMRAEIIKLIPRIIYTDPRFRLDAVEEAFDVTIERVLERVDKLRMGLCSSLS----LKEELTWKHSL 1673
+ TW + TY VFI E DV+ +SIE L +IP +VK MR +I LIPR+IY DPR L+ ++AFDV+++ V+++V +LR + + EE +WK++L
Sbjct: 457 QYTWHLPKNYTTYSVFIPEDDVRKRNISIEERLLQIPAKQVKIMRENVINLIPRLIYADPRSELETQKDAFDVSVQAVIDKVTRLRKNMIEGRTEYDYFVEENSWKYAL 565
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: GT11_ARATH (Probable xyloglucan galactosyltransferase GT11 OS=Arabidopsis thaliana OX=3702 GN=GT11 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.737e-15 Identity = 49/118 (41.53%), Postives = 70/118 (59.32%), Query Frame = -1 Query: 1332 WDFRRVNATYYVFISEKDVQDGKVSIERILSEIPKAKVKFMRAEIIKLIPRIIYTDPRFRLDAV---EEAFDVTIERVLERVDKLRM----GLCSSLSLKEELTWKHSLSVTVGEQNW 1664
W + A Y VFI EK+V++GKVSIE +LS IP+ KV MR ++I+LIPR++Y P + + E+AFDV +E VLERV+ LR G E+ +WK+++ V W
Sbjct: 596 WHLPKDIAKYSVFIPEKNVKEGKVSIENVLSRIPRTKVFAMREQVIRLIPRLMYFHPSSKSEDTGRFEDAFDVAVEGVLERVEGLRKRIEEGKEEIFDFPEQYSWKYNVFGNVERHEW 713
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: KATAM_ORYSJ (Xyloglucan galactosyltransferase KATAMARI1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0144800 PE=2 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.202e-14 Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = -1 Query: 1332 RITWDFRRVNATYYVFISEKDVQDGKVSIERILSEIPKAKVKFMRAEIIKLIPRIIYTDPRFRLDAVEEAFDVTIERVLERVDKLRMGLCSSLSLK---EELTWKHSL----SVTVGEQNW 1673
+ TW + Y VFI E V+ G VSIE L I VK MR E+I LIPR+IY DPR +L+ +++AFDV++E ++ +V +LR + K EE +WK+ L T+G W
Sbjct: 434 QYTWHLPKNYTRYSVFIPEDGVRKGNVSIEDRLKSIHPDMVKKMREEVISLIPRVIYADPRSKLETLKDAFDVSVEAIINKVTQLRRDIIEDHEDKDFVEENSWKYDLLEEGQRTIGPHEW 554
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: RBL3_ARATH (RHOMBOID-like protein 3 OS=Arabidopsis thaliana OX=3702 GN=RBL3 PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 2.236e-14 Identity = 36/54 (66.67%), Postives = 45/54 (83.33%), Query Frame = 2 Query: 4091 LENMGALQVDKVVHRHQVWRLFSCVWLHGGVVHVLANMLSLVFIGIRLEQEFGF 4252
LE +GAL+ KVV + + WRL +C+WLH GV+H+ ANMLSLVFIGIRLEQ+FGF
Sbjct: 117 LEKLGALEWSKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGF 170 HSP 2 Score: 56.225 bits (134), Expect = 2.377e-9 Identity = 40/74 (54.05%), Postives = 56/74 (75.68%), Query Frame = 1 Query: 5110 QCAALSTLIVIIVINLAVGILPHMDNFAHXXXXXXXXXXXXXXXXRPQYKWVSQRNSSSRYVSRPNSKHKPIQY 5331
+ AAL TL+ +I+INLA+GILPH+DNFAH+GGF++GFLLGF+ L RPQ+KW+++ + R K+K QY
Sbjct: 225 KIAALLTLLFVILINLAIGILPHVDNFAHVGGFVTGFLLGFILLARPQFKWLAREHMPQGTPLR--YKYKTYQY 296 HSP 3 Score: 30.4166 bits (67), Expect = 2.377e-9 Identity = 46/66 (69.70%), Postives = 57/66 (86.36%), Query Frame = 3 Query: 4818 FYAVRIGLLYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLTNWTIYANKVNNKMNLL 5015
F VRIG++Y++SG GGS+LSSLFI++ ISVGASGALFGLLG+MLSEL TNWTIY+NK+ + LL
Sbjct: 168 FGFVRIGVIYLLSGIGGSVLSSLFIRNSISVGASGALFGLLGSMLSELFTNWTIYSNKIAALLTLL 233
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: RBL7_ARATH (RHOMBOID-like protein 7 OS=Arabidopsis thaliana OX=3702 GN=RBL7 PE=3 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 4.336e-14 Identity = 34/54 (62.96%), Postives = 44/54 (81.48%), Query Frame = 2 Query: 4091 LENMGALQVDKVVHRHQVWRLFSCVWLHGGVVHVLANMLSLVFIGIRLEQEFGF 4252
LE MGAL K+VH+ QVWRL +C+WLH GV+H+LANM + +IG+RLEQ+FGF
Sbjct: 87 LEKMGALAWGKIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQFGF 140 HSP 2 Score: 58.151 bits (139), Expect = 3.979e-7 Identity = 39/75 (52.00%), Postives = 50/75 (66.67%), Query Frame = 3 Query: 3267 PPNHGGDSHSRPFKRWFPWLVPSFVVANVALFVITMYKNNCPKHSFPDSCFANFLGRFSFQPLKQNPLLGPSSST 3491
N+GG++ P +W W++P V+ANV +FV+ MY N+CP S C A FLGRFSF+ K NPLLGPSSST
Sbjct: 16 ETNNGGET--TPDMQWRSWIIPIVVIANVVVFVVVMYYNDCPHKS--HRCLAKFLGRFSFESFKSNPLLGPSSST 86
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: RBL6_ARATH (RHOMBOID-like protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL6 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 7.349e-14 Identity = 38/75 (50.67%), Postives = 49/75 (65.33%), Query Frame = 3 Query: 3273 NHGGDSHSRPFKRWFPWLVPSFVVANVALFVITMYKNNCPKHSFP--DSCFANFLGRFSFQPLKQNPLLGPSSST 3491
H GD+ +W WL P+ VVANV++F++ MY N+CPK + C A L RFSFQPL++NP LGPSSST
Sbjct: 11 KHRGDT------QWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAKLLRRFSFQPLRENPFLGPSSST 79 HSP 2 Score: 66.6254 bits (161), Expect = 1.013e-11 Identity = 47/86 (54.65%), Postives = 63/86 (73.26%), Query Frame = 1 Query: 5113 CAALSTLIVIIVINLAVGILPHMDNFAHXXXXXXXXXXXXXXXXRPQYKWVSQRNSSSRYVSRPNSKHKPIQYVLWVISFILLCAG 5370
CA LS L II INLA+G+LP +DNFAHIGG ++GF LGF+ L++PQ W RN SS+Y +R SK+ P QYVL+ ++ +L+ AG
Sbjct: 190 CALLSFLF-IIAINLAIGLLPWVDNFAHIGGLLTGFCLGFILLMQPQSGWEEFRN-SSQYGARARSKYNPCQYVLFFVAAVLVVAG 273 HSP 3 Score: 28.1054 bits (61), Expect = 1.013e-11 Identity = 44/59 (74.58%), Postives = 53/59 (89.83%), Query Frame = 3 Query: 4818 FYAVRIGLLYVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELLTNWTIYANKV 4994
F +RIGL+Y+ISGFGGS+LS+LF+Q ISVGASGAL GL+GAMLSELLTNWTIY +K+
Sbjct: 131 FGFIRIGLIYLISGFGGSILSALFLQKSISVGASGALLGLMGAMLSELLTNWTIYKSKL 189 HSP 4 Score: 66.2402 bits (160), Expect = 8.149e-10 Identity = 27/54 (50.00%), Postives = 39/54 (72.22%), Query Frame = 2 Query: 4091 LENMGALQVDKVVHRHQVWRLFSCVWLHGGVVHVLANMLSLVFIGIRLEQEFGF 4252
LE +GAL KVV ++ WRL + +WLH G++H++ NM ++ GIRLEQ+FGF
Sbjct: 80 LEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGF 133
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: RBL4_ARATH (RHOMBOID-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RBL4 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 1.201e-13 Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 3 Query: 3297 RPFKRWFPWLVPSFVVANVALFVITMYKNNCPKHSFPDSCFANFLGRFSFQPLKQNPLLGPSSST 3491
+ F+ WFPWL+P FVVANVA+FVITMY NNCPK S CFA+FLGRFSFQ ++NPLLGPSS T
Sbjct: 59 KEFRSWFPWLIPCFVVANVAVFVITMYVNNCPKKS--GDCFADFLGRFSFQNTRENPLLGPSSLT 121 HSP 2 Score: 78.5666 bits (192), Expect = 1.735e-13 Identity = 36/54 (66.67%), Postives = 43/54 (79.63%), Query Frame = 2 Query: 4091 LENMGALQVDKVVHRHQVWRLFSCVWLHGGVVHVLANMLSLVFIGIRLEQEFGF 4252
L+ MG L V KVV + WRL SC WLHGGVVH+L NML+L+FIGIR+E+EFGF
Sbjct: 122 LQTMGGLDVKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGF 175 HSP 3 Score: 65.0846 bits (157), Expect = 3.563e-9 Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 1 Query: 5110 QCAALSTLIVIIVINLAVGILPHMDNFAHXXXXXXXXXXXXXXXXRPQYKWVSQRNSSSRYVSRPNSKHKPIQYVLWVISFILLCAG*VLFLYT 5391
+ + TL++I+ +NL +G+LP +DNFAHIGGF +GFLLGFV LIRP Y W++QRN ++P+ + K Q +LW IS ++L AG ++ L +
Sbjct: 230 KVVTIVTLVLIVAVNLGLGVLPGVDNFAHIGGFATGFLLGFVLLIRPHYGWINQRNGPG---AKPH-RFKIYQGILWTISLLILVAGFIVGLIS 319 HSP 4 Score: 60.077 bits (144), Expect = 1.270e-7 Identity = 25/45 (55.56%), Postives = 30/45 (66.67%), Query Frame = 1 Query: 6289 LLDRLVAGTVLLLRGVDLNDHCSWCHYLSCVPTSKWSCKPQEVYC 6423
L+ + G + L VD N+HCSWCHYLSCVPTSKWSC + C
Sbjct: 309 LVAGFIVGLISLFNNVDGNEHCSWCHYLSCVPTSKWSCNREPASC 353
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Match: GT12_ARATH (Probable xyloglucan galactosyltransferase GT12 OS=Arabidopsis thaliana OX=3702 GN=GT12 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.314e-11 Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = -1 Query: 1428 WDFRRVNATYYVFISEKDVQDGKVSIERILSEIPKAKVKFMRAEIIKLIPRIIYTDPRFRLDAVEEAFDVTIERVLERV 1664
W F + Y V+I E ++++G VS++ IL I K ++ MR E++K+IP+IIY P F + +E+AFD+ ++R+LERV
Sbjct: 396 WYFPKDYTKYSVYIPENEMRNGTVSLKNILGMIAKERILRMRKEVVKIIPKIIYNKPGFGPEKIEDAFDIAVDRMLERV 474 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23536 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23536_La_Tanjil_v1.0 ID=rna-TanjilR_23536_La_Tanjil_v1.0; Name=rna-TanjilR_23536; organism=Lupinus angustifolius; type=mRNA; length=6959bpback to top protein sequence of rna-TanjilR_23536_La_Tanjil_v1.0 >rna-TanjilR_23536_La_Tanjil_v1.0 ID=rna-TanjilR_23536_La_Tanjil_v1.0; Name=rna-TanjilR_23536_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=331bpback to top mRNA from alignment at Chr_LG08-CM007368.1:24039673..24046631- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_23536_La_Tanjil_v1.0 ID=rna-TanjilR_23536_La_Tanjil_v1.0; Name=rna-TanjilR_23536; organism=Lupinus angustifolius; type=mRNA; length=6959bp; location=Sequence derived from: Chr_LG08-CM007368.1:24039673..24046631- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24039673..24046631- >rna-TanjilR_23536_La_Tanjil_v1.0 ID=rna-TanjilR_23536_La_Tanjil_v1.0; Name=rna-TanjilR_23536; organism=Lupinus angustifolius; type=CDS; length=996bp; location=Sequence derived from: Chr_LG08-CM007368.1:24039673..24046631- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|