rna-TanjilR_23535

Transcript Overview


Name	rna-TanjilR_23535
Unique Name	rna-TanjilR_23535_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	3644
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG08-CM007368.1	supercontig	Chr_LG08-CM007368.1:24049360..24053003 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL254	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL591	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL607	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR1271	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR1332	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR1340	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
anccR1392	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR1451	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR1096	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1148	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR1285	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR1340	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0946	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0947	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0973	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1275	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1286	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1084	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1110	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1274	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1079	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1118	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvfhR1126	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1117	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1167	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1156	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1179	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1165	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1192	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1178	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvrvR1072	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR1089	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1036	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR1065	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR1223	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1234	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1240	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1251	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR1001	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1047	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1191	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1247	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1060		Cicer arietinum
ancarR1074		Cicer arietinum
ancarR1105		Cicer arietinum
anccaR1056	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1080	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1096	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1258	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1276	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1283	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1155	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR1188	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR1262	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1260	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR1266	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1275	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR1283	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1275	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR1045	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR1072	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1313	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1340	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1378	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Va05G051600.3	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vigan.07G048600.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
rna-XM_014637749.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Ca_02628	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Ca_16290	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Ca_18599.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Ca_00448.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vfaba.Tiffany.R1.6g030760.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vfaba.Tiffany.R1.1g022040.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
evm.model.Chr05.2447	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vigun11g156800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_014641692.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vfaba.Hedin2.R1.1g033600.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Cr_01124.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Cc_v2.0_23531.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vfaba.Hedin2.R1.6g038880.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vfaba.Hedin2.R1.5g045280.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigst.04G104000.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
jg8968.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
rna-KK1_013934	Cajanus cajan Asha genome v1.0	Cajanus cajan
jg43430.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
PvulFLAVERTChr08.721	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vum_07G00385.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigst.06G173700.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
PvulFLAVERTChr05.1001054	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Cc_v2.0_16267.2	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
rna-XM_004486933.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
jg6541.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
PvulFLAVERTChr11.396	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
evm.model.Chr11.1473.1.62113171	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vum_06G01364.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vigst.07G036100.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Phvul.011G062900.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Cr_14499.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vigun05g259800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
LR48_mrnaVigan05g191100	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigan.04G186500.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vfaba.Tiffany.R1.5g037440.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vigun11g156800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Vigun05g259800.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Psat07G0589900-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Psat05G0787300-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Phvul.L007043.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vigan.06G201700.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vum_04G01305.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
rna-XM_004507118.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
XM_058924309.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Psat7g215400.1	Pisum sativum Cameor genome v1a	Pisum sativum

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_23535	gene-TanjilG_23535_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23535	rna-TanjilR_23535_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_23535_La_Tanjil_v1.0	rna-TanjilR_23535_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052943..24053003	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052943..24053003	Lupinus angustifolius	CDS
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052785..24052850	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052785..24052850	Lupinus angustifolius	CDS
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051634..24051731	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051634..24051731	Lupinus angustifolius	CDS
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051488..24051525	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051488..24051525	Lupinus angustifolius	CDS
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051279..24051366	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051279..24051366	Lupinus angustifolius	CDS
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24050059..24050358	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24050059..24050358	Lupinus angustifolius	CDS
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049734..24049799	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049734..24049799	Lupinus angustifolius	CDS
rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049360..24049503	rna-TanjilR_23535_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049360..24049503	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052943..24053003	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052943..24053003	Lupinus angustifolius	exon
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052785..24052850	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24052785..24052850	Lupinus angustifolius	exon
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051634..24051731	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051634..24051731	Lupinus angustifolius	exon
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051488..24051525	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051488..24051525	Lupinus angustifolius	exon
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051279..24051366	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24051279..24051366	Lupinus angustifolius	exon
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24050059..24050358	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24050059..24050358	Lupinus angustifolius	exon
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049734..24049799	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049734..24049799	Lupinus angustifolius	exon
rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049360..24049503	rna-TanjilR_23535_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24049360..24049503	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_23535 vs.

BLAST of rna-TanjilR_23535 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023214	HAD superfamily	GENE3D	3.40.50.1000		coord: 17..153 e-value: 7.9E-32 score: 112.5
IPR023214	HAD superfamily	GENE3D	3.40.50.1000		coord: 172..260 e-value: 1.0E-9 score: 40.3
IPR010237	Pyrimidine 5-nucleotidase	TIGRFAM	TIGR01993	TIGR01993	coord: 17..239 e-value: 1.3E-63 score: 212.0
IPR010237	Pyrimidine 5-nucleotidase	SFLD	SFLDG01132	C1.5.3:_5'-Nucleotidase_Like	coord: 10..269 e-value: 0.0 score: 225.1
IPR006439	HAD hydrolase, subfamily IA	TIGRFAM	TIGR01509	TIGR01509	coord: 192..240 e-value: 7.9E-11 score: 40.3
None	No IPR available	GENE3D	1.10.150.450		coord: 28..97 e-value: 7.9E-32 score: 112.5
None	No IPR available	SFLD	SFLDS00003	Haloacid_Dehalogenase	coord: 10..269 e-value: 0.0 score: 225.1
IPR036412	HAD-like superfamily	SUPERFAMILY	56784	HAD-like	coord: 17..260

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG08-CM007368.1:24049360..24053003-
coding sequence from alignment at Chr_LG08-CM007368.1:24049360..24053003-

mRNA sequence

>rna-TanjilR_23535_La_Tanjil_v1.0 ID=rna-TanjilR_23535_La_Tanjil_v1.0; Name=rna-TanjilR_23535; organism=Lupinus angustifolius; type=mRNA; length=3644bp
ATGGAGAATTCTCATCACTTTCAGGAAGATCCAAATGCAAAACATAACTG
TCTTTTATTTGGTAAGTTATCAAGATCTGTTGATTTTTTCTCTTTTACAT
GCTTCATTATCTTGATCTGGTTTTGTATAACTTGTTTTTGTTGATAATTT
CAGATGTTGATGATACCCTTTATCCTCTCAGTTCTGGATTGTCAGTCCAA
GTGGCAAAAAATATTGAAGGTAATCAAATTTAAGATTATGTGCTATGATA
CTTATCTAAAGCAGTAAGATTATGTATAAAATAAGAAAGGGTGATTCAAC
CTTTATTTCTTAGTGGGCTAAGATTATAATGTATTAGATACCAACCAAGT
ATTAAGAAAGAACTAGGACAAAATGAGAAATGAGTGCAGATCGTTAGTAC
TGAAAATTTAGTAGTACAATTTGTGGAAAACAAGATAATAATGCAGAAAC
AGAGAAAATGTGCAACATTCTCTTCTCTCTTTCAAATTACCCTGAACACC
TTTCTTCCTTATCTGAATTACCATCTTAATTGGATGCCCATCAATACCGT
CCTCGGTTAAAATTCGGGAAGGTTTGTTTTACGAGATCAAAGTCTCCCAC
ATGCTTAACTTCTCTTTGATTGTTATGAGACAAAAGATGGCCATTGCCTA
GTTCGGTAGACCTCTTCGGATCGGGCATGTTGAGAAGTAAGTCCCACATC
ATCTGCCTCATTCTCCTAGGCATGGTTTAAATACCAGTTGGTTTGCACCT
CTCATTGCTAATTGGCTTTGAGATGAAACCTTTGTAACTTAACTTGTGGT
TAACCTTCTGGTTCAAATACACCATTCATAGTCCCTTAAATCAACCCCGA
TCTTTCTCCGAAATGCCATCATAATGCCAGTTTAGATTAAAGCAAAGGTG
GATATACTCATAGACCTTGTTTGTTTGAGAATTTTTCTCAACAAACTCAC
TTGTTTGTAAGACTTGCCATATGTTCAACTCATATTCCTTCAATAACCAA
AATCTCCAAATAATTAGATTCTGGTTATTTTGAGTAGCTGTAGATTTCAT
CTACTTTGATACAATGAAACTCTTCTTTTCATGCAAACATTTATTATTTT
GATTCAACCAAACATAAATAGTTTATGCACATGAGGAGAGTTCAACCAAA
AATACTACTCTATTGAGTGGGTGTGTTTTTTGTTGTTGTTGGTGTGTGTG
TATGAAATTATCTAGTTTTGGAGTTGAACTTGTTCCTTTTTAATTGAACT
TTGAATCGGGTGTGTTGGACAGAGTATATGGTTGAAAAGCTTGGTATAGA
GGCTGCTAAAGTTCCTGAATTGTGCTATTCATTATATAAGGTTTATGGGA
CAACAATGGCTGGTCTAAGGGTACGATTTAAATTTCAAGGCATCGTATTG
TAGACATTGTTTTAATGCAAAGAAAGGTGATGATTAACAAATGAGACATT
TTTTTCTTCTTTTTTGTCCACTCGCCAGGCAATTGGCTATGACTTTGACT
ACAATGACTTTCATGGGTAATTTGTCTTTAACCTTCATTCAACCTTCACC
CATCTTTTTTATTTGGGCCATTCATTTAAATGAAGTTGAAACCATGTGAA
ATGGGCATCTCATCCAAGACTATTTTGTGTTAAACAGATTTGTTCATGGG
AGATTGCAATATGATTTGCTGAAACCAGATCCTGTTCTCAAGGGCATTTT
GCAGAGCCTGCCTATTAGGAAAGTTGTAAGTTTTTTTGTTTTTTGTTATT
TTGTTAATAGTGAAAGTAGTACTTGCTGAGTATGAAGTCTCTATTCAGCA
TGATGCATGTGTGTAATTTACTTTTGGTTAAATTACTCTGCAATGTTCCA
ACTATTTGGGAGTTTTCAAATAGGCCATTAAACTATTTGTATCCCTTTAA
AATCATTTGTAATTGGATCCCTTAACTTTAAAAATTTGTAGTTCGATCCT
AGTTTTTAAAGCCATTTGTAATTGAGTCTCGATAGCTCTTAATTCCCGTT
ATTCCCCTGCCTTAAAAAAATTGTAATTGTATTAGTTGCCTAAATGAAAT
TGCACCACTAATTTAATTAATTTATCATCAATTAATATTAGTGTATCATC
ATTATCACGATCATCATTATTATTATGGAAAAATGCATAAAAATCCCCTA
AACTTTTTATGTCTTTTGCAAGTAGTCACCATGAACTATTTTTTCTTTAT
ACTTACCCCTTAAGCTTTAACTATTGGTGAATTGGTCCTTGTGTAAATAT
AATATTAAAGTTCAAGATCCAATTACAAATTTTAAAGTTCAAGGATTCAA
TTAGAAACAATTTTAAAAGATCACGAGCCCAATCAAAATTTTCTAAGTCT
AGGGACCTATTTGAAAATTCTAAAATAACTCAATCACGTAATTACATGCA
ATTAAGTTGCTTGGGAGAATAGTACTAGGATGAATGATATCCTAGGAAGT
CCTTGTGTTGCACCTCATTTAAGTAGAGGGTGAGACTTGGCGCAATGATA
AGGTTGCTGCTTAGTGACCATGAGATCATGGATTCAAACAACCTGGTCGC
TTGCGGGGTAAAGTCGCCTACACTTACCTGCCCTTCTATTTTACTTAAGG
GACCTGCATGATAAGTTAACCTTTATTTTTTGTTTTCCTTTTCAGGTTTT
CACAAATGCAGACGATGGCCATGCAGCCAGAGTGCTTCGTAGGCTTGGTC
TAGAGGACTGCTTTGAGAAAATTATAAGTTTTGACACTCTGAATTCCTCC
AACAACGTCAATCCTCCTGATGATAAAGATGACACGGAATCCAGACCAAC
TAGTGCAGGAATTTTTGACTTTTATGAGTACATTTGCAACCCTGATTCTG
ATATGGTGCTTCCAAAGACCCCTGTTGTCTGCAAACCCTTTGAAGATGCA
TTTGAAAAAGTTTTCAAGATTGCAGATATCGACCCTCGAAGAACAGTAAG
TGCACAATTCCTTTCACAATTAATATTTTAGCCATAGGTATTCGTTCATC
ACTTTGCATACACACTTTTAAAGTCTAATTAACTCATGCAAGGAGTATCT
TGCTGTTTGCATATTTTATAATATTGAGTACCAAATTATCATTGTAATTA
TATAATCACTACCAAATTATCCTCTGCCTTAAAGTGGCCTCCTTTTTTTG
GTGACAACAGAATTTATGTATACACTCATGTTTTATTATTTGTGCTCTTT
TCAGTTGTTCTTTGATGACAGCATCCGCAACTTACTGACGGCCAAACGCC
TGGGCCTGCACACCGTTGCGGTTAGTACTATCTAATTCATACTTATGAAT
GAAAGGAATTTTAAGTTAGGAACAATTTTGAGTTTGAAATTATGCTTATA
GCACACTGAATTACCTTTTAAGAAGGTATAATTTGAAGTACACTTTTTAT
CTCAAACAAAACACCACTTTACAATTAAAATATAACAATTTGATTTCATA
ACAATGCAATTTGAATTTAAATGTTAGATCTTAATGCCTAATGGATACAG
GTGGGAACTTCGGTTCGAGCTACTGGAGTGGATCATGCATTGGAGAGTAT
CCATAATATCAAGGAAGCATTTCCAGAGCTCTGGGAAGCTGATGAGAAAC
ACGAAATTGCCAAGTATAAGGTTGCAATTGAAACAGTTGCTTAG

protein sequence of rna-TanjilR_23535_La_Tanjil_v1.0

>rna-TanjilR_23535_La_Tanjil_v1.0 ID=rna-TanjilR_23535_La_Tanjil_v1.0; Name=rna-TanjilR_23535_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=286bp
MENSHHFQEDPNAKHNCLLFDVDDTLYPLSSGLSVQVAKNIEEYMVEKLG
IEAAKVPELCYSLYKVYGTTMAGLRAIGYDFDYNDFHGFVHGRLQYDLLK
PDPVLKGILQSLPIRKVVFTNADDGHAARVLRRLGLEDCFEKIISFDTLN
SSNNVNPPDDKDDTESRPTSAGIFDFYEYICNPDSDMVLPKTPVVCKPFE
DAFEKVFKIADIDPRRTLFFDDSIRNLLTAKRLGLHTVAVGTSVRATGVD
HALESIHNIKEAFPELWEADEKHEIAKYKVAIETVA

mRNA from alignment at Chr_LG08-CM007368.1:24049360..24053003-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_23535_La_Tanjil_v1.0 ID=rna-TanjilR_23535_La_Tanjil_v1.0; Name=rna-TanjilR_23535; organism=Lupinus angustifolius; type=mRNA; length=3644bp; location=Sequence derived from: Chr_LG08-CM007368.1:24049360..24053003- (Lupinus angustifolius
ATGGAGAATTCTCATCACTTTCAGGAAGATCCAAATGCAAAACATAACTG
TCTTTTATTTGGTAAGTTATCAAGATCTGTTGATTTTTTCTCTTTTACAT
GCTTCATTATCTTGATCTGGTTTTGTATAACTTGTTTTTGTTGATAATTT
CAGATGTTGATGATACCCTTTATCCTCTCAGTTCTGGATTGTCAGTCCAA
GTGGCAAAAAATATTGAAGGTAATCAAATTTAAGATTATGTGCTATGATA
CTTATCTAAAGCAGTAAGATTATGTATAAAATAAGAAAGGGTGATTCAAC
CTTTATTTCTTAGTGGGCTAAGATTATAATGTATTAGATACCAACCAAGT
ATTAAGAAAGAACTAGGACAAAATGAGAAATGAGTGCAGATCGTTAGTAC
TGAAAATTTAGTAGTACAATTTGTGGAAAACAAGATAATAATGCAGAAAC
AGAGAAAATGTGCAACATTCTCTTCTCTCTTTCAAATTACCCTGAACACC
TTTCTTCCTTATCTGAATTACCATCTTAATTGGATGCCCATCAATACCGT
CCTCGGTTAAAATTCGGGAAGGTTTGTTTTACGAGATCAAAGTCTCCCAC
ATGCTTAACTTCTCTTTGATTGTTATGAGACAAAAGATGGCCATTGCCTA
GTTCGGTAGACCTCTTCGGATCGGGCATGTTGAGAAGTAAGTCCCACATC
ATCTGCCTCATTCTCCTAGGCATGGTTTAAATACCAGTTGGTTTGCACCT
CTCATTGCTAATTGGCTTTGAGATGAAACCTTTGTAACTTAACTTGTGGT
TAACCTTCTGGTTCAAATACACCATTCATAGTCCCTTAAATCAACCCCGA
TCTTTCTCCGAAATGCCATCATAATGCCAGTTTAGATTAAAGCAAAGGTG
GATATACTCATAGACCTTGTTTGTTTGAGAATTTTTCTCAACAAACTCAC
TTGTTTGTAAGACTTGCCATATGTTCAACTCATATTCCTTCAATAACCAA
AATCTCCAAATAATTAGATTCTGGTTATTTTGAGTAGCTGTAGATTTCAT
CTACTTTGATACAATGAAACTCTTCTTTTCATGCAAACATTTATTATTTT
GATTCAACCAAACATAAATAGTTTATGCACATGAGGAGAGTTCAACCAAA
AATACTACTCTATTGAGTGGGTGTGTTTTTTGTTGTTGTTGGTGTGTGTG
TATGAAATTATCTAGTTTTGGAGTTGAACTTGTTCCTTTTTAATTGAACT
TTGAATCGGGTGTGTTGGACAGAGTATATGGTTGAAAAGCTTGGTATAGA
GGCTGCTAAAGTTCCTGAATTGTGCTATTCATTATATAAGGTTTATGGGA
CAACAATGGCTGGTCTAAGGGTACGATTTAAATTTCAAGGCATCGTATTG
TAGACATTGTTTTAATGCAAAGAAAGGTGATGATTAACAAATGAGACATT
TTTTTCTTCTTTTTTGTCCACTCGCCAGGCAATTGGCTATGACTTTGACT
ACAATGACTTTCATGGGTAATTTGTCTTTAACCTTCATTCAACCTTCACC
CATCTTTTTTATTTGGGCCATTCATTTAAATGAAGTTGAAACCATGTGAA
ATGGGCATCTCATCCAAGACTATTTTGTGTTAAACAGATTTGTTCATGGG
AGATTGCAATATGATTTGCTGAAACCAGATCCTGTTCTCAAGGGCATTTT
GCAGAGCCTGCCTATTAGGAAAGTTGTAAGTTTTTTTGTTTTTTGTTATT
TTGTTAATAGTGAAAGTAGTACTTGCTGAGTATGAAGTCTCTATTCAGCA
TGATGCATGTGTGTAATTTACTTTTGGTTAAATTACTCTGCAATGTTCCA
ACTATTTGGGAGTTTTCAAATAGGCCATTAAACTATTTGTATCCCTTTAA
AATCATTTGTAATTGGATCCCTTAACTTTAAAAATTTGTAGTTCGATCCT
AGTTTTTAAAGCCATTTGTAATTGAGTCTCGATAGCTCTTAATTCCCGTT
ATTCCCCTGCCTTAAAAAAATTGTAATTGTATTAGTTGCCTAAATGAAAT
TGCACCACTAATTTAATTAATTTATCATCAATTAATATTAGTGTATCATC
ATTATCACGATCATCATTATTATTATGGAAAAATGCATAAAAATCCCCTA
AACTTTTTATGTCTTTTGCAAGTAGTCACCATGAACTATTTTTTCTTTAT
ACTTACCCCTTAAGCTTTAACTATTGGTGAATTGGTCCTTGTGTAAATAT
AATATTAAAGTTCAAGATCCAATTACAAATTTTAAAGTTCAAGGATTCAA
TTAGAAACAATTTTAAAAGATCACGAGCCCAATCAAAATTTTCTAAGTCT
AGGGACCTATTTGAAAATTCTAAAATAACTCAATCACGTAATTACATGCA
ATTAAGTTGCTTGGGAGAATAGTACTAGGATGAATGATATCCTAGGAAGT
CCTTGTGTTGCACCTCATTTAAGTAGAGGGTGAGACTTGGCGCAATGATA
AGGTTGCTGCTTAGTGACCATGAGATCATGGATTCAAACAACCTGGTCGC
TTGCGGGGTAAAGTCGCCTACACTTACCTGCCCTTCTATTTTACTTAAGG
GACCTGCATGATAAGTTAACCTTTATTTTTTGTTTTCCTTTTCAGGTTTT
CACAAATGCAGACGATGGCCATGCAGCCAGAGTGCTTCGTAGGCTTGGTC
TAGAGGACTGCTTTGAGAAAATTATAAGTTTTGACACTCTGAATTCCTCC
AACAACGTCAATCCTCCTGATGATAAAGATGACACGGAATCCAGACCAAC
TAGTGCAGGAATTTTTGACTTTTATGAGTACATTTGCAACCCTGATTCTG
ATATGGTGCTTCCAAAGACCCCTGTTGTCTGCAAACCCTTTGAAGATGCA
TTTGAAAAAGTTTTCAAGATTGCAGATATCGACCCTCGAAGAACAGTAAG
TGCACAATTCCTTTCACAATTAATATTTTAGCCATAGGTATTCGTTCATC
ACTTTGCATACACACTTTTAAAGTCTAATTAACTCATGCAAGGAGTATCT
TGCTGTTTGCATATTTTATAATATTGAGTACCAAATTATCATTGTAATTA
TATAATCACTACCAAATTATCCTCTGCCTTAAAGTGGCCTCCTTTTTTTG
GTGACAACAGAATTTATGTATACACTCATGTTTTATTATTTGTGCTCTTT
TCAGTTGTTCTTTGATGACAGCATCCGCAACTTACTGACGGCCAAACGCC
TGGGCCTGCACACCGTTGCGGTTAGTACTATCTAATTCATACTTATGAAT
GAAAGGAATTTTAAGTTAGGAACAATTTTGAGTTTGAAATTATGCTTATA
GCACACTGAATTACCTTTTAAGAAGGTATAATTTGAAGTACACTTTTTAT
CTCAAACAAAACACCACTTTACAATTAAAATATAACAATTTGATTTCATA
ACAATGCAATTTGAATTTAAATGTTAGATCTTAATGCCTAATGGATACAG
GTGGGAACTTCGGTTCGAGCTACTGGAGTGGATCATGCATTGGAGAGTAT
CCATAATATCAAGGAAGCATTTCCAGAGCTCTGGGAAGCTGATGAGAAAC
ACGAAATTGCCAAGTATAAGGTTGCAATTGAAACAGTTGCTTAG

Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24049360..24053003-

>rna-TanjilR_23535_La_Tanjil_v1.0 ID=rna-TanjilR_23535_La_Tanjil_v1.0; Name=rna-TanjilR_23535; organism=Lupinus angustifolius; type=CDS; length=861bp; location=Sequence derived from: Chr_LG08-CM007368.1:24049360..24053003- (Lupinus angustifolius
ATGGAGAATTCTCATCACTTTCAGGAAGATCCAAATGCAAAACATAACTG
TCTTTTATTTGATGTTGATGATACCCTTTATCCTCTCAGTTCTGGATTGT
CAGTCCAAGTGGCAAAAAATATTGAAGAGTATATGGTTGAAAAGCTTGGT
ATAGAGGCTGCTAAAGTTCCTGAATTGTGCTATTCATTATATAAGGTTTA
TGGGACAACAATGGCTGGTCTAAGGGCAATTGGCTATGACTTTGACTACA
ATGACTTTCATGGATTTGTTCATGGGAGATTGCAATATGATTTGCTGAAA
CCAGATCCTGTTCTCAAGGGCATTTTGCAGAGCCTGCCTATTAGGAAAGT
TGTTTTCACAAATGCAGACGATGGCCATGCAGCCAGAGTGCTTCGTAGGC
TTGGTCTAGAGGACTGCTTTGAGAAAATTATAAGTTTTGACACTCTGAAT
TCCTCCAACAACGTCAATCCTCCTGATGATAAAGATGACACGGAATCCAG
ACCAACTAGTGCAGGAATTTTTGACTTTTATGAGTACATTTGCAACCCTG
ATTCTGATATGGTGCTTCCAAAGACCCCTGTTGTCTGCAAACCCTTTGAA
GATGCATTTGAAAAAGTTTTCAAGATTGCAGATATCGACCCTCGAAGAAC
ATTGTTCTTTGATGACAGCATCCGCAACTTACTGACGGCCAAACGCCTGG
GCCTGCACACCGTTGCGGTGGGAACTTCGGTTCGAGCTACTGGAGTGGAT
CATGCATTGGAGAGTATCCATAATATCAAGGAAGCATTTCCAGAGCTCTG
GGAAGCTGATGAGAAACACGAAATTGCCAAGTATAAGGTTGCAATTGAAA
CAGTTGCTTAG

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR023214	HAD_sf
IPR010237	Pyr-5-nucltdase
IPR006439	HAD-SF_hydro_IA
IPR036412	HAD-like_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0016787	hydrolase activity

Search form

rna-TanjilR_23535