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Transcript Overview
Name | rna-TanjilR_23524 |
Unique Name | rna-TanjilR_23524_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 1648 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23524 | rna-TanjilR_23524_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_23524_La_Tanjil_v1.0 | rna-TanjilR_23524_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124542..24124724 | rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124542..24124724 | Lupinus angustifolius | exon |
rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124835..24125114 | rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124835..24125114 | Lupinus angustifolius | exon |
rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24125713..24125829 | rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24125713..24125829 | Lupinus angustifolius | exon |
rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24126083..24126189 | rna-TanjilR_23524_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24126083..24126189 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124542..24124724 | rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124542..24124724 | Lupinus angustifolius | CDS |
rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124835..24125114 | rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24124835..24125114 | Lupinus angustifolius | CDS |
rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24125713..24125829 | rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24125713..24125829 | Lupinus angustifolius | CDS |
rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24126083..24126189 | rna-TanjilR_23524_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24126083..24126189 | Lupinus angustifolius | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 108..133 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23524_La_Tanjil_v1.0 ID=rna-TanjilR_23524_La_Tanjil_v1.0; Name=rna-TanjilR_23524; organism=Lupinus angustifolius; type=mRNA; length=1648bp ATGTGGTCACGTTTGGGCTCAAACCAACGGAGCCTTAAAGGGTCCCCTGA TAGCACCAGCTACGTGGTTGGAATGTTTGAGAAGATGAAACTTCCGGAAA GCAGTTATGGCAATACCTGCTCCAATGTTGGACCCTCCACCTACCACAAA TCTTTTGGTCAAGATCAAATTCGAGCTATTCAAGTAAGAAAACATTACAG TTAACATATTTAGGCCAATCAAGTCCCATTCGAGTAACACGTGCACTTTT ATCTTTATTGGTTTGATGGTTTCCATTTTTGTGTGTGTTATAGTTGTCTC GGCTCAAGCAAGAGCAGATTCTATCTCTGAAGCAAAAACTGGTTGTATAT AGAGAAAGTCGTGCCAGAATACCACACCAATATGAGCCCAATGAAGAGAT TATGCAGTTTCAGAAGAAAGGGAAAAGGGTTGGTGTAGAGTCTGGTAATG GACAACATAGGACTCGCCCAATACGACCTGCTCCTATGCCTCACCAAACC GCTTCAACAGCGGCATCTTGTGGGACTGGTGTTTTCTTGCCACGTGGTGG AATAGGTGACCCGTTTGAGACAGGTGATCTCCATCCATGAAACCAGTACC ATGTCATTGGTCCGGTTCAGTCGATTTacgttttcatttttttagtataa agaTGGTTGCCTGTTAATTTGTTCACTAGTTTCTGATATGGAAATATCAA CTATCCCATTCGATTATTTTTATGCTGGATTTGGATTCGTCCAACtattc tttaattaatttttctagATGGAGTTTGAACTAGAATCTCCTCCATACTA TTACTATtcattcttaaaaaaatgttagatGTGCAATCTACACCAACAAT TTTCTGGcacaacttttgattttataatacTTTATTATACAAACTACAAA ATATTGGGGATCAGCTGTCCCCAAGCCTGTTCCAAAGTCTGTCCCAAACC AATTATAGTGAAACAAAAATAGGTAAAATcatgaatgtttaaatttttaa ctgATCTAGCATATTGTGATTGATTTGGGACAGACTTTGGGACATGATTG AGAACATCATATCATTGTCTTAGTAGGGGAACCAATTTTACAGATTCTTC ATTTGTACCGAATCCCTGCTCAATACTTCAATCATCCTTATGTCTTACTT ATTTGTGATTTAATTTATTAGGTAAAGGTTGCTCCACTGTTCTTATACCA GCTAGAGTAGTACAGGCTCTGCAACTACACTTTGATCAAATGGCAGCCAC GCCTGGACCTAAAGTTGCAGGGTTCCCTCCTCTCCACGGTACCTAATTAT CCAACAACCACTTTTCTTTGGGACAGACACAGTTAGCTAGATTAGGCTTT AAACTAaagcattttttttatattacatataataaatttgAGCAATCTTA TTTAGATCGAATTAGATATGTTTACTGTAAGATTAGTAGGGGGAAAGTTT TGATGGGGATAACAAAACATTGTTTTCAGTCCATTGAGATGTAACAGCTA TTGGCTAGAAAAATTGGACTATCTATGTTATTGATTTGCAGATGTTATAG TGAGCAATAGGGATGGCATGTATTCACTACAGAGTAGCCAATCAGTGAAA GCAAACAATCAGAATGAGATGATTCTGCCTCAAGAGTGGACCTATTAA back to topprotein sequence of rna-TanjilR_23524_La_Tanjil_v1.0 >rna-TanjilR_23524_La_Tanjil_v1.0 ID=rna-TanjilR_23524_La_Tanjil_v1.0; Name=rna-TanjilR_23524_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=228bp MWSRLGSNQRSLKGSPDSTSYVVGMFEKMKLPESSYGNTCSNVGPSTYHK SFGQDQIRAIQLSRLKQEQILSLKQKLVVYRESRARIPHQYEPNEEIMQF QKKGKRVGVESGNGQHRTRPIRPAPMPHQTASTAASCGTGVFLPRGGIGD PFETGKGCSTVLIPARVVQALQLHFDQMAATPGPKVAGFPPLHDVIVSNR DGMYSLQSSQSVKANNQNEMILPQEWTY back to topmRNA from alignment at Chr_LG08-CM007368.1:24124542..24126189+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_23524_La_Tanjil_v1.0 ID=rna-TanjilR_23524_La_Tanjil_v1.0; Name=rna-TanjilR_23524; organism=Lupinus angustifolius; type=mRNA; length=1648bp; location=Sequence derived from: Chr_LG08-CM007368.1:24124542..24126189+ (Lupinus angustifolius ATGTGGTCACGTTTGGGCTCAAACCAACGGAGCCTTAAAGGGTCCCCTGA
TAGCACCAGCTACGTGGTTGGAATGTTTGAGAAGATGAAACTTCCGGAAA
GCAGTTATGGCAATACCTGCTCCAATGTTGGACCCTCCACCTACCACAAA
TCTTTTGGTCAAGATCAAATTCGAGCTATTCAAGTAAGAAAACATTACAG
TTAACATATTTAGGCCAATCAAGTCCCATTCGAGTAACACGTGCACTTTT
ATCTTTATTGGTTTGATGGTTTCCATTTTTGTGTGTGTTATAGTTGTCTC
GGCTCAAGCAAGAGCAGATTCTATCTCTGAAGCAAAAACTGGTTGTATAT
AGAGAAAGTCGTGCCAGAATACCACACCAATATGAGCCCAATGAAGAGAT
TATGCAGTTTCAGAAGAAAGGGAAAAGGGTTGGTGTAGAGTCTGGTAATG
GACAACATAGGACTCGCCCAATACGACCTGCTCCTATGCCTCACCAAACC
GCTTCAACAGCGGCATCTTGTGGGACTGGTGTTTTCTTGCCACGTGGTGG
AATAGGTGACCCGTTTGAGACAGGTGATCTCCATCCATGAAACCAGTACC
ATGTCATTGGTCCGGTTCAGTCGATTTacgttttcatttttttagtataa
agaTGGTTGCCTGTTAATTTGTTCACTAGTTTCTGATATGGAAATATCAA
CTATCCCATTCGATTATTTTTATGCTGGATTTGGATTCGTCCAACtattc
tttaattaatttttctagATGGAGTTTGAACTAGAATCTCCTCCATACTA
TTACTATtcattcttaaaaaaatgttagatGTGCAATCTACACCAACAAT
TTTCTGGcacaacttttgattttataatacTTTATTATACAAACTACAAA
ATATTGGGGATCAGCTGTCCCCAAGCCTGTTCCAAAGTCTGTCCCAAACC
AATTATAGTGAAACAAAAATAGGTAAAATcatgaatgtttaaatttttaa
ctgATCTAGCATATTGTGATTGATTTGGGACAGACTTTGGGACATGATTG
AGAACATCATATCATTGTCTTAGTAGGGGAACCAATTTTACAGATTCTTC
ATTTGTACCGAATCCCTGCTCAATACTTCAATCATCCTTATGTCTTACTT
ATTTGTGATTTAATTTATTAGGTAAAGGTTGCTCCACTGTTCTTATACCA
GCTAGAGTAGTACAGGCTCTGCAACTACACTTTGATCAAATGGCAGCCAC
GCCTGGACCTAAAGTTGCAGGGTTCCCTCCTCTCCACGGTACCTAATTAT
CCAACAACCACTTTTCTTTGGGACAGACACAGTTAGCTAGATTAGGCTTT
AAACTAaagcattttttttatattacatataataaatttgAGCAATCTTA
TTTAGATCGAATTAGATATGTTTACTGTAAGATTAGTAGGGGGAAAGTTT
TGATGGGGATAACAAAACATTGTTTTCAGTCCATTGAGATGTAACAGCTA
TTGGCTAGAAAAATTGGACTATCTATGTTATTGATTTGCAGATGTTATAG
TGAGCAATAGGGATGGCATGTATTCACTACAGAGTAGCCAATCAGTGAAA
GCAAACAATCAGAATGAGATGATTCTGCCTCAAGAGTGGACCTATTAA back to topCoding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24124542..24126189+ >rna-TanjilR_23524_La_Tanjil_v1.0 ID=rna-TanjilR_23524_La_Tanjil_v1.0; Name=rna-TanjilR_23524; organism=Lupinus angustifolius; type=CDS; length=687bp; location=Sequence derived from: Chr_LG08-CM007368.1:24124542..24126189+ (Lupinus angustifolius ATGTGGTCACGTTTGGGCTCAAACCAACGGAGCCTTAAAGGGTCCCCTGA TAGCACCAGCTACGTGGTTGGAATGTTTGAGAAGATGAAACTTCCGGAAA GCAGTTATGGCAATACCTGCTCCAATGTTGGACCCTCCACCTACCACAAA TCTTTTGGTCAAGATCAAATTCGAGCTATTCAATTGTCTCGGCTCAAGCA AGAGCAGATTCTATCTCTGAAGCAAAAACTGGTTGTATATAGAGAAAGTC GTGCCAGAATACCACACCAATATGAGCCCAATGAAGAGATTATGCAGTTT CAGAAGAAAGGGAAAAGGGTTGGTGTAGAGTCTGGTAATGGACAACATAG GACTCGCCCAATACGACCTGCTCCTATGCCTCACCAAACCGCTTCAACAG CGGCATCTTGTGGGACTGGTGTTTTCTTGCCACGTGGTGGAATAGGTGAC CCGTTTGAGACAGGTAAAGGTTGCTCCACTGTTCTTATACCAGCTAGAGT AGTACAGGCTCTGCAACTACACTTTGATCAAATGGCAGCCACGCCTGGAC CTAAAGTTGCAGGGTTCCCTCCTCTCCACGATGTTATAGTGAGCAATAGG GATGGCATGTATTCACTACAGAGTAGCCAATCAGTGAAAGCAAACAATCA GAATGAGATGATTCTGCCTCAAGAGTGGACCTATTAA back to top
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