Transcript Overview
Name rna-TanjilR_23508
Unique Name rna-TanjilR_23508_La_Tanjil_v1.0
Type mRNA
Organism Lupinus angustifolius (blue lupin)
Sequence length 2227
Product hypothetical protein
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_23508 rna-TanjilR_23508_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide
rna-TanjilR_23508_La_Tanjil_v1.0 rna-TanjilR_23508_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 Lupinus angustifolius exon
rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 Lupinus angustifolius exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 Lupinus angustifolius CDS
rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 Lupinus angustifolius CDS
Homology
BLAST of rna-TanjilR_23508 vs. DB:Swiss
Match:
IRKI_ARATH (IRK-interacting protein OS=Arabidopsis thaliana OX=3702 GN=IRKI PE=1 SV=1)
HSP 1 Score: 497.664 bits (1280), Expect = 1.092e-167
Identity = 277/497 (55.73%), Postives = 349/497 (70.22%), Query Frame = 2
Query: 797 DQACNQNSMKSRTISETWDENGLERGNNIETMVADYKEKSSSRKGLSHICPADDSTSVTDSCANQITVLQTSPANDYFNCRRTNSSEDFKSMSIVTSEFE----NTRNSKSSNVDVSVTEPHT-------KSKG--VISRLFPRLKKKSKNE---NSPSRAE-SEDVSQVLKDLGIMSVETLKKELVEAHENRDLALMEVSEMKSSLGELKQKLEYLENYCGELKKALKEGMKTRDSQVCEQLNNLPQRGKSFHENLMPVSEEVMVEGFLQIVSESRLSVKQLCKTLINNIDETDHSLTQNLNFLLQPYKLSLNSKYSKAVLYHFEAFINHSLYQDFENCVFQMNGCPKFLDPQQDFQAQFSSFVSLRNLSWNEVLKKGTKYYSEEFSMFCDHKMSCIATSLNWTRPWPEQLLQAFIVAAKCTWLLHLLAFSFNPPLRILRVEENRNFDSHYMEDMCPR------SQGPSRVKIMVMPGFYVQEKVLRCKVLCRYKS 2218
D+ + K+ T+SETWDE+G+ + +T ++D + S+SRK + + P DS + ++ L++ P + Y R S DF+S+S + +T++ KSSN+ V +T+ H+ +++G V+S LFP+LKKK K+ NSPS E SE+VS+VLKD G VE LK+EL+EA+ +RD AL +VSEMKSSLGEL +KL+YLE+YC LKKAL+E ++V Q N+ R + MPVSEEVMVEGFLQIVSE+RLS+KQ KTL++ IDE D +L N+N LLQP+ LS SKYSK + YH EA I+ S+YQDFENCVFQ NG PK LDP+QD QA FSSF SLRNLSWNEVLKKGTKYYS+EFS FCD KMS I T+LNWTRPW EQ+LQAF VAAKC WLLHLLAFSFNP L ILRVEENR F+S +MEDM S+GP+RVK+MVMPGFYV ++VLRCKVLCRYKS
Sbjct: 77 DEPVSAFHHKNLTLSETWDEDGVGLVDG-DTYLSDSYKTSTSRKTV--MMPHQDSHHHVYTMSD---ALRSPPLHFYTTGRSNCGSVDFRSVSSCNDYNKQKGFDTKSLKSSNLVVPLTDSHSAVVSSQPRNRGGRVMSWLFPKLKKKQKSNSIFNSPSITEKSEEVSEVLKDSG-SGVEKLKRELMEANRSRDAALTQVSEMKSSLGELSEKLQYLESYCDNLKKALREA-----TEVVSQENS-GGRSSGKKNSEMPVSEEVMVEGFLQIVSEARLSIKQFLKTLVSEIDEEDSTLIGNINTLLQPHNLSFTSKYSKIIQYHLEAIISQSVYQDFENCVFQKNGKPKLLDPEQDRQANFSSFASLRNLSWNEVLKKGTKYYSDEFSRFCDEKMSLIITTLNWTRPWSEQMLQAFFVAAKCVWLLHLLAFSFNPALGILRVEENREFESSFMEDMGADRQRSALSRGPARVKVMVMPGFYVLDRVLRCKVLCRYKS 560
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
200 400 600 800 1000 1200 1400 1600 1800 2000 2200 Score = Sequence Coil
IPR Term IPR Description Source Source Term Source Description Alignment
None No IPR available COILS Coil Coil coord: 246..266
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508; organism=Lupinus angustifolius; type=mRNA; length=2227bp ATGGATGcaactactactactactacttcAGTTTTCAAagacaaaaacaa caacaatggaaAGCATGAAATAACAAGGCAAGAAATTCAGAGTGCCATAG CCAAAGCAGTGGAGCTAAGAGCTCTTCATGAAGCTTTGATGAGAGGAAAT AGCCCAGCCAATGCTAGATTCACAACTCCTTCCCCTGCTCCACGCTCTGT TTCTCACTTTTCTGCCCATGATTACCCTCTTTTCACTCCAgtaagtttca tttttctcttcaaatttAACTTGTAATTTGTCTTTTACTTCTTTTGCCAA ATTGGGTATCTAATATAAACACAGATAGCACTGTTTCTGGACTAAATTCT ATGATACTTCAATATATGGAACAAGGAATAATAGTATAATACCTAGCATG TGGTTTTTGTTATGCAATATCCTTATTTTCTCCTATCCCTTGAACTCTGC TACTTGTGATAGTTAATAAGTCATATAAAACTGTTGCTTACTTGCCTTCT TCTTCATAGGTTGATGGGTAGATCAGAAGTCATTGTTGTTGCAGTTATAT CCTTAATTGTTGCTATCCTTTCTTTATCTTATATAATCTCAATGAAACAC CAACCAAGAATCAAGTTTTGACTTCTGTTACTGTTTAggatttttaattt aatttcttgaTATGGAAACTTTATGGTTTAGAAGTCAACTGATCTAAACC CAGAGGTCAATTTCACAACCAtgaatctatttatttttactctttcatta gaaaaactaatattatgattttatccATTGACAGAGCGATGAATATGACC AAGCTTGCAATCAAAACTCCATGAAAAGCCGAACAATATCAGAAACTTGG GATGAGAATGGGCTAGAAAGAGGAAACAACATAGAAACCATGGTAGCAGA TTACAAGGAAAAATCAAGTTCAAGAAAGGGACTATCTCATATATGTCCTG CTGATGATAGCACATCTGTAACTGACTCTTGTGCAAATCAAATTACAGTT CTTCAAACATCACCAGCCAATGACTACTTCAACTGTAGGAGGACAAACAG TTCTGAGGATTTCAAGTCCATGTCCATTGTAACAAGTGAATTTGAGAATA CAAGGAACAGCAAGAGTTCCAATGTTGATGTCTCAGTCACTGAACCCCAC ACCAAAAGCAAGGGAGTGATTTCACGATTGTTTCCTCGGCTAAAGAAGAA GAGCAAGAATGAGAATTCTCCAAGCAGAGCGGAATCTGAGGATGTTTCTC AGGTTCTCAAGGACTTGGGAATCATGTCGGTTGAAACATTGAAGAAAGAG CTGGTGGAAGCACATGAGAATCGAGATTTAGCATTAATGGAAGTTTCTGA GATGAAATCTTCACTCGGGGAACTGAAGCAAAAGCTGGAGTACTTAGAGA ATTACTGTGGAGAACTGAAGAAAGCTTTAAAAGAAGGCATGAAGACAAGG GATTCTCAAGTTTGTGAACAACTTAATAACCTTCCACAGAGAGGGAAATC ATTTCATGAGAATTTGATGCCTGTAAGTGAGGAAGTAATGGTAGAGGGAT TCTTGCAGATAGTATCGGAGTCCAGATTATCGGTGAAGCAGTTATGTAAG ACGCTTATAAACAACATTGATGAAACTGATCATTCTTTGACACAAAATTT GAACTTTCTTCTTCAACCATATAAGCTGTCTCTCAATTCCAAATACTCAA AGGCAGTTCTATACCACTTTGAAGCCTTCATAAATCATTCTCTCTACCAA GACTTCGAGAACTGTGTGTTCCAAATGAATGGCTGCCCAAAATTCTTAGA CCCACAGCAGGATTTCCAAGCGCAGTTCTCGTCATTTGTTTCCCTCAGGA ATTTGAGCTGGAATGAGGTACTGAAAAAAGGGACAAAGTATTATAGTGAG GAATTCAGCATGTTCTGTGACCATAAAATGAGTTGTATTGCCACTAGTCT AAATTGGACAAGGCCATGGCCTGAACAGCTCCTTCAAGCTTTCATTGTGG CAGCAAAATGCACATGGTTGCTACATTTGCTTGCCTTTTCTTTCAACCCA CCATTGAGAATTTTAAGGGTTGAAGAGAATAGAAACTTTGACTCTCACTA CATGGAAGATATGTGTCCAAGGTCACAAGGTCCAAGCCGGGTTAAGATCA TGGTGATGCCGGGGTTTTATGTTCAGGAAAAGGTCTTGAGGTGTAAAGTT CTTTGCAGATACAAATCTGCAGCCTAA back to top protein sequence of rna-TanjilR_23508_La_Tanjil_v1.0
>rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=560bp MDATTTTTTSVFKDKNNNNGKHEITRQEIQSAIAKAVELRALHEALMRGN SPANARFTTPSPAPRSVSHFSAHDYPLFTPSDEYDQACNQNSMKSRTISE TWDENGLERGNNIETMVADYKEKSSSRKGLSHICPADDSTSVTDSCANQI TVLQTSPANDYFNCRRTNSSEDFKSMSIVTSEFENTRNSKSSNVDVSVTE PHTKSKGVISRLFPRLKKKSKNENSPSRAESEDVSQVLKDLGIMSVETLK KELVEAHENRDLALMEVSEMKSSLGELKQKLEYLENYCGELKKALKEGMK TRDSQVCEQLNNLPQRGKSFHENLMPVSEEVMVEGFLQIVSESRLSVKQL CKTLINNIDETDHSLTQNLNFLLQPYKLSLNSKYSKAVLYHFEAFINHSL YQDFENCVFQMNGCPKFLDPQQDFQAQFSSFVSLRNLSWNEVLKKGTKYY SEEFSMFCDHKMSCIATSLNWTRPWPEQLLQAFIVAAKCTWLLHLLAFSF NPPLRILRVEENRNFDSHYMEDMCPRSQGPSRVKIMVMPGFYVQEKVLRC KVLCRYKSAA back to top mRNA from alignment at Chr_LG08-CM007368.1:24225018..24227244+
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508; organism=Lupinus angustifolius; type=mRNA; length=2227bp; location=Sequence derived from: Chr_LG08-CM007368.1:24225018..24227244+ (Lupinus angustifoliusATGGATGcaactactactactactacttcAGTTTTCAAagacaaaaacaa
caacaatggaaAGCATGAAATAACAAGGCAAGAAATTCAGAGTGCCATAG
CCAAAGCAGTGGAGCTAAGAGCTCTTCATGAAGCTTTGATGAGAGGAAAT
AGCCCAGCCAATGCTAGATTCACAACTCCTTCCCCTGCTCCACGCTCTGT
TTCTCACTTTTCTGCCCATGATTACCCTCTTTTCACTCCA gtaagtttca
tttttctcttcaaatttAACTTGTAATTTGTCTTTTACTTCTTTTGCCAA
ATTGGGTATCTAATATAAACACAGATAGCACTGTTTCTGGACTAAATTCT
ATGATACTTCAATATATGGAACAAGGAATAATAGTATAATACCTAGCATG
TGGTTTTTGTTATGCAATATCCTTATTTTCTCCTATCCCTTGAACTCTGC
TACTTGTGATAGTTAATAAGTCATATAAAACTGTTGCTTACTTGCCTTCT
TCTTCATAGGTTGATGGGTAGATCAGAAGTCATTGTTGTTGCAGTTATAT
CCTTAATTGTTGCTATCCTTTCTTTATCTTATATAATCTCAATGAAACAC
CAACCAAGAATCAAGTTTTGACTTCTGTTACTGTTTAggatttttaattt
aatttcttgaTATGGAAACTTTATGGTTTAGAAGTCAACTGATCTAAACC
CAGAGGTCAATTTCACAACCAtgaatctatttatttttactctttcatta
gaaaaactaatattatgattttatccATTGACAGAGCGATGAATATGACC
AAGCTTGCAATCAAAACTCCATGAAAAGCCGAACAATATCAGAAACTTGG
GATGAGAATGGGCTAGAAAGAGGAAACAACATAGAAACCATGGTAGCAGA
TTACAAGGAAAAATCAAGTTCAAGAAAGGGACTATCTCATATATGTCCTG
CTGATGATAGCACATCTGTAACTGACTCTTGTGCAAATCAAATTACAGTT
CTTCAAACATCACCAGCCAATGACTACTTCAACTGTAGGAGGACAAACAG
TTCTGAGGATTTCAAGTCCATGTCCATTGTAACAAGTGAATTTGAGAATA
CAAGGAACAGCAAGAGTTCCAATGTTGATGTCTCAGTCACTGAACCCCAC
ACCAAAAGCAAGGGAGTGATTTCACGATTGTTTCCTCGGCTAAAGAAGAA
GAGCAAGAATGAGAATTCTCCAAGCAGAGCGGAATCTGAGGATGTTTCTC
AGGTTCTCAAGGACTTGGGAATCATGTCGGTTGAAACATTGAAGAAAGAG
CTGGTGGAAGCACATGAGAATCGAGATTTAGCATTAATGGAAGTTTCTGA
GATGAAATCTTCACTCGGGGAACTGAAGCAAAAGCTGGAGTACTTAGAGA
ATTACTGTGGAGAACTGAAGAAAGCTTTAAAAGAAGGCATGAAGACAAGG
GATTCTCAAGTTTGTGAACAACTTAATAACCTTCCACAGAGAGGGAAATC
ATTTCATGAGAATTTGATGCCTGTAAGTGAGGAAGTAATGGTAGAGGGAT
TCTTGCAGATAGTATCGGAGTCCAGATTATCGGTGAAGCAGTTATGTAAG
ACGCTTATAAACAACATTGATGAAACTGATCATTCTTTGACACAAAATTT
GAACTTTCTTCTTCAACCATATAAGCTGTCTCTCAATTCCAAATACTCAA
AGGCAGTTCTATACCACTTTGAAGCCTTCATAAATCATTCTCTCTACCAA
GACTTCGAGAACTGTGTGTTCCAAATGAATGGCTGCCCAAAATTCTTAGA
CCCACAGCAGGATTTCCAAGCGCAGTTCTCGTCATTTGTTTCCCTCAGGA
ATTTGAGCTGGAATGAGGTACTGAAAAAAGGGACAAAGTATTATAGTGAG
GAATTCAGCATGTTCTGTGACCATAAAATGAGTTGTATTGCCACTAGTCT
AAATTGGACAAGGCCATGGCCTGAACAGCTCCTTCAAGCTTTCATTGTGG
CAGCAAAATGCACATGGTTGCTACATTTGCTTGCCTTTTCTTTCAACCCA
CCATTGAGAATTTTAAGGGTTGAAGAGAATAGAAACTTTGACTCTCACTA
CATGGAAGATATGTGTCCAAGGTCACAAGGTCCAAGCCGGGTTAAGATCA
TGGTGATGCCGGGGTTTTATGTTCAGGAAAAGGTCTTGAGGTGTAAAGTT
CTTTGCAGATACAAATCTGCAGCCTAA back to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24225018..24227244+
>rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508; organism=Lupinus angustifolius; type=CDS; length=1683bp; location=Sequence derived from: Chr_LG08-CM007368.1:24225018..24227244+ (Lupinus angustifolius ATGGATGcaactactactactactacttcAGTTTTCAAagacaaaaacaa caacaatggaaAGCATGAAATAACAAGGCAAGAAATTCAGAGTGCCATAG CCAAAGCAGTGGAGCTAAGAGCTCTTCATGAAGCTTTGATGAGAGGAAAT AGCCCAGCCAATGCTAGATTCACAACTCCTTCCCCTGCTCCACGCTCTGT TTCTCACTTTTCTGCCCATGATTACCCTCTTTTCACTCCAAGCGATGAAT ATGACCAAGCTTGCAATCAAAACTCCATGAAAAGCCGAACAATATCAGAA ACTTGGGATGAGAATGGGCTAGAAAGAGGAAACAACATAGAAACCATGGT AGCAGATTACAAGGAAAAATCAAGTTCAAGAAAGGGACTATCTCATATAT GTCCTGCTGATGATAGCACATCTGTAACTGACTCTTGTGCAAATCAAATT ACAGTTCTTCAAACATCACCAGCCAATGACTACTTCAACTGTAGGAGGAC AAACAGTTCTGAGGATTTCAAGTCCATGTCCATTGTAACAAGTGAATTTG AGAATACAAGGAACAGCAAGAGTTCCAATGTTGATGTCTCAGTCACTGAA CCCCACACCAAAAGCAAGGGAGTGATTTCACGATTGTTTCCTCGGCTAAA GAAGAAGAGCAAGAATGAGAATTCTCCAAGCAGAGCGGAATCTGAGGATG TTTCTCAGGTTCTCAAGGACTTGGGAATCATGTCGGTTGAAACATTGAAG AAAGAGCTGGTGGAAGCACATGAGAATCGAGATTTAGCATTAATGGAAGT TTCTGAGATGAAATCTTCACTCGGGGAACTGAAGCAAAAGCTGGAGTACT TAGAGAATTACTGTGGAGAACTGAAGAAAGCTTTAAAAGAAGGCATGAAG ACAAGGGATTCTCAAGTTTGTGAACAACTTAATAACCTTCCACAGAGAGG GAAATCATTTCATGAGAATTTGATGCCTGTAAGTGAGGAAGTAATGGTAG AGGGATTCTTGCAGATAGTATCGGAGTCCAGATTATCGGTGAAGCAGTTA TGTAAGACGCTTATAAACAACATTGATGAAACTGATCATTCTTTGACACA AAATTTGAACTTTCTTCTTCAACCATATAAGCTGTCTCTCAATTCCAAAT ACTCAAAGGCAGTTCTATACCACTTTGAAGCCTTCATAAATCATTCTCTC TACCAAGACTTCGAGAACTGTGTGTTCCAAATGAATGGCTGCCCAAAATT CTTAGACCCACAGCAGGATTTCCAAGCGCAGTTCTCGTCATTTGTTTCCC TCAGGAATTTGAGCTGGAATGAGGTACTGAAAAAAGGGACAAAGTATTAT AGTGAGGAATTCAGCATGTTCTGTGACCATAAAATGAGTTGTATTGCCAC TAGTCTAAATTGGACAAGGCCATGGCCTGAACAGCTCCTTCAAGCTTTCA TTGTGGCAGCAAAATGCACATGGTTGCTACATTTGCTTGCCTTTTCTTTC AACCCACCATTGAGAATTTTAAGGGTTGAAGAGAATAGAAACTTTGACTC TCACTACATGGAAGATATGTGTCCAAGGTCACAAGGTCCAAGCCGGGTTA AGATCATGGTGATGCCGGGGTTTTATGTTCAGGAAAAGGTCTTGAGGTGT AAAGTTCTTTGCAGATACAAATCTGCAGCCTAA back to top