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Transcript Overview
Name | rna-TanjilR_23508 |
Unique Name | rna-TanjilR_23508_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2227 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23508 | rna-TanjilR_23508_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_23508_La_Tanjil_v1.0 | rna-TanjilR_23508_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 | rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 | Lupinus angustifolius | exon |
rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 | rna-TanjilR_23508_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 | rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225018..24225257 | Lupinus angustifolius | CDS |
rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 | rna-TanjilR_23508_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24225802..24227244 | Lupinus angustifolius | CDS |
Homology
BLAST of rna-TanjilR_23508 vs. DB:Swiss
Match: IRKI_ARATH (IRK-interacting protein OS=Arabidopsis thaliana OX=3702 GN=IRKI PE=1 SV=1) HSP 1 Score: 497.664 bits (1280), Expect = 1.092e-167 Identity = 277/497 (55.73%), Postives = 349/497 (70.22%), Query Frame = 2
Query: 797 DQACNQNSMKSRTISETWDENGLERGNNIETMVADYKEKSSSRKGLSHICPADDSTSVTDSCANQITVLQTSPANDYFNCRRTNSSEDFKSMSIVTSEFE----NTRNSKSSNVDVSVTEPHT-------KSKG--VISRLFPRLKKKSKNE---NSPSRAE-SEDVSQVLKDLGIMSVETLKKELVEAHENRDLALMEVSEMKSSLGELKQKLEYLENYCGELKKALKEGMKTRDSQVCEQLNNLPQRGKSFHENLMPVSEEVMVEGFLQIVSESRLSVKQLCKTLINNIDETDHSLTQNLNFLLQPYKLSLNSKYSKAVLYHFEAFINHSLYQDFENCVFQMNGCPKFLDPQQDFQAQFSSFVSLRNLSWNEVLKKGTKYYSEEFSMFCDHKMSCIATSLNWTRPWPEQLLQAFIVAAKCTWLLHLLAFSFNPPLRILRVEENRNFDSHYMEDMCPR------SQGPSRVKIMVMPGFYVQEKVLRCKVLCRYKS 2218
D+ + K+ T+SETWDE+G+ + +T ++D + S+SRK + + P DS + ++ L++ P + Y R S DF+S+S + +T++ KSSN+ V +T+ H+ +++G V+S LFP+LKKK K+ NSPS E SE+VS+VLKD G VE LK+EL+EA+ +RD AL +VSEMKSSLGEL +KL+YLE+YC LKKAL+E ++V Q N+ R + MPVSEEVMVEGFLQIVSE+RLS+KQ KTL++ IDE D +L N+N LLQP+ LS SKYSK + YH EA I+ S+YQDFENCVFQ NG PK LDP+QD QA FSSF SLRNLSWNEVLKKGTKYYS+EFS FCD KMS I T+LNWTRPW EQ+LQAF VAAKC WLLHLLAFSFNP L ILRVEENR F+S +MEDM S+GP+RVK+MVMPGFYV ++VLRCKVLCRYKS
Sbjct: 77 DEPVSAFHHKNLTLSETWDEDGVGLVDG-DTYLSDSYKTSTSRKTV--MMPHQDSHHHVYTMSD---ALRSPPLHFYTTGRSNCGSVDFRSVSSCNDYNKQKGFDTKSLKSSNLVVPLTDSHSAVVSSQPRNRGGRVMSWLFPKLKKKQKSNSIFNSPSITEKSEEVSEVLKDSG-SGVEKLKRELMEANRSRDAALTQVSEMKSSLGELSEKLQYLESYCDNLKKALREA-----TEVVSQENS-GGRSSGKKNSEMPVSEEVMVEGFLQIVSEARLSIKQFLKTLVSEIDEEDSTLIGNINTLLQPHNLSFTSKYSKIIQYHLEAIISQSVYQDFENCVFQKNGKPKLLDPEQDRQANFSSFASLRNLSWNEVLKKGTKYYSDEFSRFCDEKMSLIITTLNWTRPWSEQMLQAFFVAAKCVWLLHLLAFSFNPALGILRVEENREFESSFMEDMGADRQRSALSRGPARVKVMVMPGFYVLDRVLRCKVLCRYKS 560
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 246..266 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508; organism=Lupinus angustifolius; type=mRNA; length=2227bp ATGGATGcaactactactactactacttcAGTTTTCAAagacaaaaacaa caacaatggaaAGCATGAAATAACAAGGCAAGAAATTCAGAGTGCCATAG CCAAAGCAGTGGAGCTAAGAGCTCTTCATGAAGCTTTGATGAGAGGAAAT AGCCCAGCCAATGCTAGATTCACAACTCCTTCCCCTGCTCCACGCTCTGT TTCTCACTTTTCTGCCCATGATTACCCTCTTTTCACTCCAgtaagtttca tttttctcttcaaatttAACTTGTAATTTGTCTTTTACTTCTTTTGCCAA ATTGGGTATCTAATATAAACACAGATAGCACTGTTTCTGGACTAAATTCT ATGATACTTCAATATATGGAACAAGGAATAATAGTATAATACCTAGCATG TGGTTTTTGTTATGCAATATCCTTATTTTCTCCTATCCCTTGAACTCTGC TACTTGTGATAGTTAATAAGTCATATAAAACTGTTGCTTACTTGCCTTCT TCTTCATAGGTTGATGGGTAGATCAGAAGTCATTGTTGTTGCAGTTATAT CCTTAATTGTTGCTATCCTTTCTTTATCTTATATAATCTCAATGAAACAC CAACCAAGAATCAAGTTTTGACTTCTGTTACTGTTTAggatttttaattt aatttcttgaTATGGAAACTTTATGGTTTAGAAGTCAACTGATCTAAACC CAGAGGTCAATTTCACAACCAtgaatctatttatttttactctttcatta gaaaaactaatattatgattttatccATTGACAGAGCGATGAATATGACC AAGCTTGCAATCAAAACTCCATGAAAAGCCGAACAATATCAGAAACTTGG GATGAGAATGGGCTAGAAAGAGGAAACAACATAGAAACCATGGTAGCAGA TTACAAGGAAAAATCAAGTTCAAGAAAGGGACTATCTCATATATGTCCTG CTGATGATAGCACATCTGTAACTGACTCTTGTGCAAATCAAATTACAGTT CTTCAAACATCACCAGCCAATGACTACTTCAACTGTAGGAGGACAAACAG TTCTGAGGATTTCAAGTCCATGTCCATTGTAACAAGTGAATTTGAGAATA CAAGGAACAGCAAGAGTTCCAATGTTGATGTCTCAGTCACTGAACCCCAC ACCAAAAGCAAGGGAGTGATTTCACGATTGTTTCCTCGGCTAAAGAAGAA GAGCAAGAATGAGAATTCTCCAAGCAGAGCGGAATCTGAGGATGTTTCTC AGGTTCTCAAGGACTTGGGAATCATGTCGGTTGAAACATTGAAGAAAGAG CTGGTGGAAGCACATGAGAATCGAGATTTAGCATTAATGGAAGTTTCTGA GATGAAATCTTCACTCGGGGAACTGAAGCAAAAGCTGGAGTACTTAGAGA ATTACTGTGGAGAACTGAAGAAAGCTTTAAAAGAAGGCATGAAGACAAGG GATTCTCAAGTTTGTGAACAACTTAATAACCTTCCACAGAGAGGGAAATC ATTTCATGAGAATTTGATGCCTGTAAGTGAGGAAGTAATGGTAGAGGGAT TCTTGCAGATAGTATCGGAGTCCAGATTATCGGTGAAGCAGTTATGTAAG ACGCTTATAAACAACATTGATGAAACTGATCATTCTTTGACACAAAATTT GAACTTTCTTCTTCAACCATATAAGCTGTCTCTCAATTCCAAATACTCAA AGGCAGTTCTATACCACTTTGAAGCCTTCATAAATCATTCTCTCTACCAA GACTTCGAGAACTGTGTGTTCCAAATGAATGGCTGCCCAAAATTCTTAGA CCCACAGCAGGATTTCCAAGCGCAGTTCTCGTCATTTGTTTCCCTCAGGA ATTTGAGCTGGAATGAGGTACTGAAAAAAGGGACAAAGTATTATAGTGAG GAATTCAGCATGTTCTGTGACCATAAAATGAGTTGTATTGCCACTAGTCT AAATTGGACAAGGCCATGGCCTGAACAGCTCCTTCAAGCTTTCATTGTGG CAGCAAAATGCACATGGTTGCTACATTTGCTTGCCTTTTCTTTCAACCCA CCATTGAGAATTTTAAGGGTTGAAGAGAATAGAAACTTTGACTCTCACTA CATGGAAGATATGTGTCCAAGGTCACAAGGTCCAAGCCGGGTTAAGATCA TGGTGATGCCGGGGTTTTATGTTCAGGAAAAGGTCTTGAGGTGTAAAGTT CTTTGCAGATACAAATCTGCAGCCTAA back to topprotein sequence of rna-TanjilR_23508_La_Tanjil_v1.0 >rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=560bp MDATTTTTTSVFKDKNNNNGKHEITRQEIQSAIAKAVELRALHEALMRGN SPANARFTTPSPAPRSVSHFSAHDYPLFTPSDEYDQACNQNSMKSRTISE TWDENGLERGNNIETMVADYKEKSSSRKGLSHICPADDSTSVTDSCANQI TVLQTSPANDYFNCRRTNSSEDFKSMSIVTSEFENTRNSKSSNVDVSVTE PHTKSKGVISRLFPRLKKKSKNENSPSRAESEDVSQVLKDLGIMSVETLK KELVEAHENRDLALMEVSEMKSSLGELKQKLEYLENYCGELKKALKEGMK TRDSQVCEQLNNLPQRGKSFHENLMPVSEEVMVEGFLQIVSESRLSVKQL CKTLINNIDETDHSLTQNLNFLLQPYKLSLNSKYSKAVLYHFEAFINHSL YQDFENCVFQMNGCPKFLDPQQDFQAQFSSFVSLRNLSWNEVLKKGTKYY SEEFSMFCDHKMSCIATSLNWTRPWPEQLLQAFIVAAKCTWLLHLLAFSF NPPLRILRVEENRNFDSHYMEDMCPRSQGPSRVKIMVMPGFYVQEKVLRC KVLCRYKSAA back to topmRNA from alignment at Chr_LG08-CM007368.1:24225018..24227244+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508; organism=Lupinus angustifolius; type=mRNA; length=2227bp; location=Sequence derived from: Chr_LG08-CM007368.1:24225018..24227244+ (Lupinus angustifolius ATGGATGcaactactactactactacttcAGTTTTCAAagacaaaaacaa
caacaatggaaAGCATGAAATAACAAGGCAAGAAATTCAGAGTGCCATAG
CCAAAGCAGTGGAGCTAAGAGCTCTTCATGAAGCTTTGATGAGAGGAAAT
AGCCCAGCCAATGCTAGATTCACAACTCCTTCCCCTGCTCCACGCTCTGT
TTCTCACTTTTCTGCCCATGATTACCCTCTTTTCACTCCAgtaagtttca
tttttctcttcaaatttAACTTGTAATTTGTCTTTTACTTCTTTTGCCAA
ATTGGGTATCTAATATAAACACAGATAGCACTGTTTCTGGACTAAATTCT
ATGATACTTCAATATATGGAACAAGGAATAATAGTATAATACCTAGCATG
TGGTTTTTGTTATGCAATATCCTTATTTTCTCCTATCCCTTGAACTCTGC
TACTTGTGATAGTTAATAAGTCATATAAAACTGTTGCTTACTTGCCTTCT
TCTTCATAGGTTGATGGGTAGATCAGAAGTCATTGTTGTTGCAGTTATAT
CCTTAATTGTTGCTATCCTTTCTTTATCTTATATAATCTCAATGAAACAC
CAACCAAGAATCAAGTTTTGACTTCTGTTACTGTTTAggatttttaattt
aatttcttgaTATGGAAACTTTATGGTTTAGAAGTCAACTGATCTAAACC
CAGAGGTCAATTTCACAACCAtgaatctatttatttttactctttcatta
gaaaaactaatattatgattttatccATTGACAGAGCGATGAATATGACC
AAGCTTGCAATCAAAACTCCATGAAAAGCCGAACAATATCAGAAACTTGG
GATGAGAATGGGCTAGAAAGAGGAAACAACATAGAAACCATGGTAGCAGA
TTACAAGGAAAAATCAAGTTCAAGAAAGGGACTATCTCATATATGTCCTG
CTGATGATAGCACATCTGTAACTGACTCTTGTGCAAATCAAATTACAGTT
CTTCAAACATCACCAGCCAATGACTACTTCAACTGTAGGAGGACAAACAG
TTCTGAGGATTTCAAGTCCATGTCCATTGTAACAAGTGAATTTGAGAATA
CAAGGAACAGCAAGAGTTCCAATGTTGATGTCTCAGTCACTGAACCCCAC
ACCAAAAGCAAGGGAGTGATTTCACGATTGTTTCCTCGGCTAAAGAAGAA
GAGCAAGAATGAGAATTCTCCAAGCAGAGCGGAATCTGAGGATGTTTCTC
AGGTTCTCAAGGACTTGGGAATCATGTCGGTTGAAACATTGAAGAAAGAG
CTGGTGGAAGCACATGAGAATCGAGATTTAGCATTAATGGAAGTTTCTGA
GATGAAATCTTCACTCGGGGAACTGAAGCAAAAGCTGGAGTACTTAGAGA
ATTACTGTGGAGAACTGAAGAAAGCTTTAAAAGAAGGCATGAAGACAAGG
GATTCTCAAGTTTGTGAACAACTTAATAACCTTCCACAGAGAGGGAAATC
ATTTCATGAGAATTTGATGCCTGTAAGTGAGGAAGTAATGGTAGAGGGAT
TCTTGCAGATAGTATCGGAGTCCAGATTATCGGTGAAGCAGTTATGTAAG
ACGCTTATAAACAACATTGATGAAACTGATCATTCTTTGACACAAAATTT
GAACTTTCTTCTTCAACCATATAAGCTGTCTCTCAATTCCAAATACTCAA
AGGCAGTTCTATACCACTTTGAAGCCTTCATAAATCATTCTCTCTACCAA
GACTTCGAGAACTGTGTGTTCCAAATGAATGGCTGCCCAAAATTCTTAGA
CCCACAGCAGGATTTCCAAGCGCAGTTCTCGTCATTTGTTTCCCTCAGGA
ATTTGAGCTGGAATGAGGTACTGAAAAAAGGGACAAAGTATTATAGTGAG
GAATTCAGCATGTTCTGTGACCATAAAATGAGTTGTATTGCCACTAGTCT
AAATTGGACAAGGCCATGGCCTGAACAGCTCCTTCAAGCTTTCATTGTGG
CAGCAAAATGCACATGGTTGCTACATTTGCTTGCCTTTTCTTTCAACCCA
CCATTGAGAATTTTAAGGGTTGAAGAGAATAGAAACTTTGACTCTCACTA
CATGGAAGATATGTGTCCAAGGTCACAAGGTCCAAGCCGGGTTAAGATCA
TGGTGATGCCGGGGTTTTATGTTCAGGAAAAGGTCTTGAGGTGTAAAGTT
CTTTGCAGATACAAATCTGCAGCCTAA back to topCoding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24225018..24227244+ >rna-TanjilR_23508_La_Tanjil_v1.0 ID=rna-TanjilR_23508_La_Tanjil_v1.0; Name=rna-TanjilR_23508; organism=Lupinus angustifolius; type=CDS; length=1683bp; location=Sequence derived from: Chr_LG08-CM007368.1:24225018..24227244+ (Lupinus angustifolius ATGGATGcaactactactactactacttcAGTTTTCAAagacaaaaacaa caacaatggaaAGCATGAAATAACAAGGCAAGAAATTCAGAGTGCCATAG CCAAAGCAGTGGAGCTAAGAGCTCTTCATGAAGCTTTGATGAGAGGAAAT AGCCCAGCCAATGCTAGATTCACAACTCCTTCCCCTGCTCCACGCTCTGT TTCTCACTTTTCTGCCCATGATTACCCTCTTTTCACTCCAAGCGATGAAT ATGACCAAGCTTGCAATCAAAACTCCATGAAAAGCCGAACAATATCAGAA ACTTGGGATGAGAATGGGCTAGAAAGAGGAAACAACATAGAAACCATGGT AGCAGATTACAAGGAAAAATCAAGTTCAAGAAAGGGACTATCTCATATAT GTCCTGCTGATGATAGCACATCTGTAACTGACTCTTGTGCAAATCAAATT ACAGTTCTTCAAACATCACCAGCCAATGACTACTTCAACTGTAGGAGGAC AAACAGTTCTGAGGATTTCAAGTCCATGTCCATTGTAACAAGTGAATTTG AGAATACAAGGAACAGCAAGAGTTCCAATGTTGATGTCTCAGTCACTGAA CCCCACACCAAAAGCAAGGGAGTGATTTCACGATTGTTTCCTCGGCTAAA GAAGAAGAGCAAGAATGAGAATTCTCCAAGCAGAGCGGAATCTGAGGATG TTTCTCAGGTTCTCAAGGACTTGGGAATCATGTCGGTTGAAACATTGAAG AAAGAGCTGGTGGAAGCACATGAGAATCGAGATTTAGCATTAATGGAAGT TTCTGAGATGAAATCTTCACTCGGGGAACTGAAGCAAAAGCTGGAGTACT TAGAGAATTACTGTGGAGAACTGAAGAAAGCTTTAAAAGAAGGCATGAAG ACAAGGGATTCTCAAGTTTGTGAACAACTTAATAACCTTCCACAGAGAGG GAAATCATTTCATGAGAATTTGATGCCTGTAAGTGAGGAAGTAATGGTAG AGGGATTCTTGCAGATAGTATCGGAGTCCAGATTATCGGTGAAGCAGTTA TGTAAGACGCTTATAAACAACATTGATGAAACTGATCATTCTTTGACACA AAATTTGAACTTTCTTCTTCAACCATATAAGCTGTCTCTCAATTCCAAAT ACTCAAAGGCAGTTCTATACCACTTTGAAGCCTTCATAAATCATTCTCTC TACCAAGACTTCGAGAACTGTGTGTTCCAAATGAATGGCTGCCCAAAATT CTTAGACCCACAGCAGGATTTCCAAGCGCAGTTCTCGTCATTTGTTTCCC TCAGGAATTTGAGCTGGAATGAGGTACTGAAAAAAGGGACAAAGTATTAT AGTGAGGAATTCAGCATGTTCTGTGACCATAAAATGAGTTGTATTGCCAC TAGTCTAAATTGGACAAGGCCATGGCCTGAACAGCTCCTTCAAGCTTTCA TTGTGGCAGCAAAATGCACATGGTTGCTACATTTGCTTGCCTTTTCTTTC AACCCACCATTGAGAATTTTAAGGGTTGAAGAGAATAGAAACTTTGACTC TCACTACATGGAAGATATGTGTCCAAGGTCACAAGGTCCAAGCCGGGTTA AGATCATGGTGATGCCGGGGTTTTATGTTCAGGAAAAGGTCTTGAGGTGT AAAGTTCTTTGCAGATACAAATCTGCAGCCTAA back to top
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