rna-TanjilR_23493

Transcript Overview
Namerna-TanjilR_23493
Unique Namerna-TanjilR_23493_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length3645
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:24359604..24363248 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL595Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1332Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1334Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1392Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1451Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1467Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1096Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1139Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1285Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1345Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1350Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0965Pisum sativum Cameor genome v1aPisum sativum
anpsR0976Pisum sativum Cameor genome v1aPisum sativum
anpvR1276Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1085Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1110Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1201Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1122Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1126Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1117Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1179Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1165Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1193Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1180Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1071Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1041Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1245Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1258Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1001Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1038Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1191Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1247Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1060Cicer arietinum
ancarR1105Cicer arietinum
anccaR1080Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1276Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1283Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1189Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1266Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1275Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1283Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1275Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1049Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1072Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1313Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1340Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1383Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.06G214600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vum_06G01486.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Ca_13680Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004507299.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_18716.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
XM_058877585.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Psat07G0562700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Cr_15917.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
evm.model.Chr11.1569.1.62113172Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
rna-KK1_012275Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun11g167900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigst.06G184100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat7g208960.1Pisum sativum Cameor genome v1aPisum sativum
Phvul.011G052300.3Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vfaba.Tiffany.R1.6g032800.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan08g165500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg48863.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.6g041600.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va08G066700.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Cc_v2.0_09144.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014637973.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun11g167900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
PvulFLAVERTChr11.1000348Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_23493gene-TanjilG_23493_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23493rna-TanjilR_23493_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_23493_La_Tanjil_v1.0rna-TanjilR_23493_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359604..24359770rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359604..24359770Lupinus angustifoliusexon
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359862..24360204rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359862..24360204Lupinus angustifoliusexon
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360303..24360386rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360303..24360386Lupinus angustifoliusexon
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360854..24360919rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360854..24360919Lupinus angustifoliusexon
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24361304..24361376rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24361304..24361376Lupinus angustifoliusexon
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362021..24362403rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362021..24362403Lupinus angustifoliusexon
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362634..24362674rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362634..24362674Lupinus angustifoliusexon
rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24363170..24363248rna-TanjilR_23493_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24363170..24363248Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359604..24359770rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359604..24359770Lupinus angustifoliusCDS
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359862..24360204rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24359862..24360204Lupinus angustifoliusCDS
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360303..24360386rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360303..24360386Lupinus angustifoliusCDS
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360854..24360919rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24360854..24360919Lupinus angustifoliusCDS
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24361304..24361376rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24361304..24361376Lupinus angustifoliusCDS
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362021..24362403rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362021..24362403Lupinus angustifoliusCDS
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362634..24362674rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24362634..24362674Lupinus angustifoliusCDS
rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24363170..24363248rna-TanjilR_23493_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24363170..24363248Lupinus angustifoliusCDS


Homology
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BLAST of rna-TanjilR_23493 vs. DB:Swiss
Match: U1159_ARATH (U11/U12 small nuclear ribonucleoprotein 59 kDa protein OS=Arabidopsis thaliana OX=3702 GN=SNRNP59 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.225e-22
Identity = 64/114 (56.14%), Postives = 82/114 (71.93%), Query Frame = 2 
Query:  260 QKELEILEMVKDAKGDLEDVKRSLNEPYISGVLKCMEDLWVSIETQESLSVEAANSLIVKLKAQLEPFRYVADEASPWEEKSAAVRFENKVHXXXXXXXXXXXXXXXIAEMLAK 601
            +KELE L+M+KDAKG +E+  +       SGV + +E   + +  QE LSV+AANSL+  L+AQLEPFR+V DE SPWEEKSAAVR   K+ KS RNKLW+K+KR+  AEM AK
Sbjct:   53 EKELEALKMIKDAKGSVENAVQD------SGV-EYLEARKMDLGQQEMLSVDAANSLMSTLRAQLEPFRFVVDENSPWEEKSAAVRLTCKMKKSIRNKLWKKRKRRCAAEMRAK 159

HSP 2 Score: 43.8986 bits (102), Expect = 4.225e-22
Identity = 18/27 (66.67%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:  706 EQFDQINREADEWRAREIAKDIANIKV 786
            E+F+Q +READEWR +E+AKD+AN KV
Sbjct:  162 ERFEQADREADEWREKEMAKDMANRKV 188
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23493 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
U1159_ARATH4.225e-2256.14U11/U12 small nuclear ribonucleoprotein 59 kDa pro... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 168..188
NoneNo IPR availableCOILSCoilCoilcoord: 276..296
NoneNo IPR availableCOILSCoilCoilcoord: 36..56
NoneNo IPR availableCOILSCoilCoilcoord: 207..227
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 303..336
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 290..344
IPR031974Programmed cell death protein 7PFAMPF16021PDCD7coord: 129..407
e-value: 5.8E-16
score: 58.5

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_23493_La_Tanjil_v1.0 ID=rna-TanjilR_23493_La_Tanjil_v1.0; Name=rna-TanjilR_23493; organism=Lupinus angustifolius; type=mRNA; length=3645bp
ATGAATCCTATTTACTTTCAACCCGCACCACAACCTCGTCCTCATGTACC
TCTTCAATTTCCGTTATTACCGACTCAATCACCAAATTCATGTTCCTTTT
GGGAGAATAGGAATCTCTCTGAACGCCTCGGAGAATTGCAACATACTCTC
AATCTTGCTAAGGCAATGTATGTTGTTCTTATTGCAACTTTCTACATCTT
TAATCATATGCTTATTTCAAACATAAGGTAATTGGGTACATGCTATTTCA
TATTGTAGGCAGAAGGAGCTAGAGATTTTAGAGATGGTAAAAGATGCTAA
GGGGGATTTAGAAGATGTAAAACGTAGCTTAAATGAACCTTATATCTCTG
GTGTTTTGAAATGTATGGAAGATTTATGGGTTAGTATTGAAACCCAAGAA
TCGTTGTCTGTGGAAGCTGCGAATTCTTTGATTGTAAAGCTTAAAGCTCA
GCTAGAGCCATTCAGATATGTTGCGGATGAAGCAAGTCCATGGGAGGAGA
AATCTGCAGCAGTTAGGTTTGAGAATAAAGTGCATAAATCAAAACGAAAT
AAACTATggaggaagaaaaaaaggaagcGAATTGCAGAAATGCTGGCAAA
GGTTACTTTCCCTTGGTTTATTTTTGTTAGACATTTCCTTTGCCATTTTT
TTAAGATTGATAGCTTTGTTTGGGTGTTCtctttgttaaaaaaatgtagg
agcatgagcaatttgaccaaatcaaCCGAGAAGCTGATGAGTGGAGGGCT
AGGGAGATCGCCAAGGACATTGCAAACATTAAGGTATTCAAATTTATGCC
AGAGGCTAAATGAAAGATCATGCtgatatgattttcaaaatcaGATATGT
GATTATCATCTCTGGAAACTCAAGGATTGGTGCTGAAATAAGCATGAACA
ATTACATAAAACTTCGTAtaattcattgttattatttttttatcctcATT
ACACATAACTATAGTGCACTCCCCTTTACGGCACTGTTTATATCCCTATA
TACTTCCAGATTAAGAGTAGATGTTGGAAATAATTGAAAGGTAGTTGATG
ATACTTCCAATCACACATTTCTACTTTTGCCTACTTCTACTCAAACTTTT
TGCTGCTATCTTTTCCTTACTGTCCCCTCACGAAAAAACAAGGAAGGTAA
AACTGATTCGTTCTGTTTGGAAATGACTTGCAGATGTATTAGCCCTGATA
CCAGTTTGCAATGCAAATCTTAGTAATATCTGATGCATGTCTATTTGCAG
GTAGAAAAGATGAAAGAAATTGCGAAGCTTAAAGctaaagaagagaagaa
gaaactaGAATCTGAGGTAACTTTCTTTTAGTACAAATGGCTGTTAAATC
ATTGCTAATTAATGGTTGTTGTCAAGTTTGATGAACTTGTTCAAACATTC
TCTGCAATCTACCATAACCccatatgtcatgatttttaTCTCACATTTGT
CTATGACAAATATATCACGTGAAccatttccttttttattccCAATATGG
TATGTTCCTTAGCTCCTTACCATCACTATGaaccacttttttttttcttc
tgtcaGTCCCCAGTAAAAAGCATATACACAACTTTCTTCTGTCTTTTCGT
TTACTCAACCAATATGaatcactttaatttttttattttctaccgTGTCC
CCTCACTTTTCATTGGGTTTCAATTCTGTTGCATGCTTGTTGTGTTGAAG
CTTGAGCTACTGTTGGTAGTGGAGAAGCTTCAAGAATTACGCTCCATGAG
gatacaaaagttgaaaaaacAAGGTAAATATATACGAAAGTCAGTCTGCT
TCTAAGTTTGTTGTAATTGTATTGCCCGTTGTGACTCAAGTGCTTCATGT
GTTTGCTTGGTAATTTTTCTCCAGCCCTGCAGCCATATATAACTTTTGAA
CTTCGTATCCTAATTTATCACCTTAAATTTAGAGTCCCGAATGATGGTGA
GCTTTGTcacaatggtaaggttgtttgccttgtgacctagaGGTCATAGG
TCCAATTgatcaaatcctgaaaacaactTTTTCGCTTGTAAAGGTAAGGG
TGCGTACATCTACCCCTAGACTCCACTAGATGGGAGTCGACTAGGCTGtc
cttttaaattttgagtcCTAAATGCAGTTTTGTGATAGATTAAATTCTTT
ATAAATCATGTGTGCCTGAGTTCAAGCTCTAGCACTTAGCCTTTTGATTG
GAGCTGAATAGTTACCTATTCACCTTGTAAATGTATATCTTTGACAAATT
TGTTCATTATCAATTGAAAATCATACATTTCTAGTTCAATAATAATGTAA
CAGGCATGATTTTTCTTGCTTTTCTAATTGGATTTTTCCAATATGTCTGT
CCTTTATGTGTGCAAGTGTGTGTATATTCATGTAAGTAACATGTGATTCA
TTTTACAAATTATGCAGGTCACTTTTTCCCAGAGGAAGATGACAAGTTTA
TTGAGAGTGTTCAGGCTGCTGTGGAAGCAGAGGAGCGTGATGCTTTGGCT
GCAGCTGAAACAGATGCTGCTAAAGATGCAATCGCAACTGCTGAGGAGTC
CAGGAAGGCTATTCAGAATCAAGGGAAACTCTCAAAAGGATGCGATGGTG
ATAAGCCAGTTGAGGAGAGAAAAGAGCAACTCGTTCACAGTGGAACTGAT
GAGGGTTCTGGTGCATTGGATGAGAAGAAATCTAGTAAAATAGCATCCGA
AGGACAGAGCAGCGGAGTATATGACCCTCTGGCAAATTTACCTATTGAGT
TCTATCATTATTATCATGGCAGTAACAATGACATGGGCACACTTATCGAG
GTATTTCAATTGAACTCTACATGTTTTGAGAAACAACACTTTTCTCCCTT
GTTTCTTTTGAGTACATATGTAATCAGTTGAATTTTCTAGGTACGAAGGC
TGCTAATTTTACTTTACTGACACCATTATAGCTTAATGGTGCTACTTTTT
TTTAACCAACTTATGTTTTTCTCGACTGCATGTTCATTATAAGCTCGAAA
TTATTAAGACTTCTGAATAACCTCATGCAGGTTAGAAGAGGATGGGATGC
CTATATCAGACCAGGAGGAAGGTAAGAAACAATAACAATGAAGCTTTTGT
gctaatatttcattttttttggcATATATTAGATTGCATTTCAAAACTGG
GTGAAACAAGGAGGGCACGAGGTCAagtcatttatattatatatatacca
cacacatatacatacatatatatatatatatatatatatatatatatatt
attcatgagATCATGACTCTGATCTGCCACCACAGTCTTTTATAACATCA
CGGATCTGTACAGTATATCATGTCATCCATACCACTGTTATTAAATCAAA
ATCCAGTGTTAGTGCTGCTATAATAGCTATGAGTGACCacaatttatttt
gatatttattgcCTATCATATAACCTTGACACTGTTGTCACCTGGCATGT
TCATCAGCTTACTAATTTCTAATTCAATCATTCCTTGTATCattgtgaaa
aatgaaaataaaaagtcTGATTATCTTGCTTACTTGGATGATTTTTTTCA
TTGCAACTTTGTACAGCCGCATACCAGGGCACTGGGTTCAGCCTCCTCCT
CCAGCCAATGAGATATATGCATCTTACTTAGTGAGGCCTAAATGA
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protein sequence of rna-TanjilR_23493_La_Tanjil_v1.0

>rna-TanjilR_23493_La_Tanjil_v1.0 ID=rna-TanjilR_23493_La_Tanjil_v1.0; Name=rna-TanjilR_23493_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=411bp
MNPIYFQPAPQPRPHVPLQFPLLPTQSPNSCSFWENRNLSERLGELQHTL
NLAKAMQKELEILEMVKDAKGDLEDVKRSLNEPYISGVLKCMEDLWVSIE
TQESLSVEAANSLIVKLKAQLEPFRYVADEASPWEEKSAAVRFENKVHKS
KRNKLWRKKKRKRIAEMLAKEHEQFDQINREADEWRAREIAKDIANIKVE
KMKEIAKLKAKEEKKKLESELELLLVVEKLQELRSMRIQKLKKQGHFFPE
EDDKFIESVQAAVEAEERDALAAAETDAAKDAIATAEESRKAIQNQGKLS
KGCDGDKPVEERKEQLVHSGTDEGSGALDEKKSSKIASEGQSSGVYDPLA
NLPIEFYHYYHGSNNDMGTLIEVRRGWDAYIRPGGSRIPGHWVQPPPPAN
EIYASYLVRPK
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mRNA from alignment at Chr_LG08-CM007368.1:24359604..24363248+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23493_La_Tanjil_v1.0 ID=rna-TanjilR_23493_La_Tanjil_v1.0; Name=rna-TanjilR_23493; organism=Lupinus angustifolius; type=mRNA; length=3645bp; location=Sequence derived from: Chr_LG08-CM007368.1:24359604..24363248+ (Lupinus angustifolius
ATGAATCCTATTTACTTTCAACCCGCACCACAACCTCGTCCTCATGTACC
TCTTCAATTTCCGTTATTACCGACTCAATCACCAAATTCATGTTCCTTTT
GGGAGAATAGGAATCTCTCTGAACGCCTCGGAGAATTGCAACATACTCTC
AATCTTGCTAAGGCAATGTATGTTGTTCTTATTGCAACTTTCTACATCTT
TAATCATATGCTTATTTCAAACATAAGGTAATTGGGTACATGCTATTTCA
TATTGTAGGCAGAAGGAGCTAGAGATTTTAGAGATGGTAAAAGATGCTAA
GGGGGATTTAGAAGATGTAAAACGTAGCTTAAATGAACCTTATATCTCTG
GTGTTTTGAAATGTATGGAAGATTTATGGGTTAGTATTGAAACCCAAGAA
TCGTTGTCTGTGGAAGCTGCGAATTCTTTGATTGTAAAGCTTAAAGCTCA
GCTAGAGCCATTCAGATATGTTGCGGATGAAGCAAGTCCATGGGAGGAGA
AATCTGCAGCAGTTAGGTTTGAGAATAAAGTGCATAAATCAAAACGAAAT
AAACTATggaggaagaaaaaaaggaagcGAATTGCAGAAATGCTGGCAAA
GGTTACTTTCCCTTGGTTTATTTTTGTTAGACATTTCCTTTGCCATTTTT
TTAAGATTGATAGCTTTGTTTGGGTGTTCtctttgttaaaaaaatgtagg
agcatgagcaatttgaccaaatcaaCCGAGAAGCTGATGAGTGGAGGGCT
AGGGAGATCGCCAAGGACATTGCAAACATTAAGGTATTCAAATTTATGCC
AGAGGCTAAATGAAAGATCATGCtgatatgattttcaaaatcaGATATGT
GATTATCATCTCTGGAAACTCAAGGATTGGTGCTGAAATAAGCATGAACA
ATTACATAAAACTTCGTAtaattcattgttattatttttttatcctcATT
ACACATAACTATAGTGCACTCCCCTTTACGGCACTGTTTATATCCCTATA
TACTTCCAGATTAAGAGTAGATGTTGGAAATAATTGAAAGGTAGTTGATG
ATACTTCCAATCACACATTTCTACTTTTGCCTACTTCTACTCAAACTTTT
TGCTGCTATCTTTTCCTTACTGTCCCCTCACGAAAAAACAAGGAAGGTAA
AACTGATTCGTTCTGTTTGGAAATGACTTGCAGATGTATTAGCCCTGATA
CCAGTTTGCAATGCAAATCTTAGTAATATCTGATGCATGTCTATTTGCAG
GTAGAAAAGATGAAAGAAATTGCGAAGCTTAAAGctaaagaagagaagaa
gaaactaGAATCTGAGGTAACTTTCTTTTAGTACAAATGGCTGTTAAATC
ATTGCTAATTAATGGTTGTTGTCAAGTTTGATGAACTTGTTCAAACATTC
TCTGCAATCTACCATAACCccatatgtcatgatttttaTCTCACATTTGT
CTATGACAAATATATCACGTGAAccatttccttttttattccCAATATGG
TATGTTCCTTAGCTCCTTACCATCACTATGaaccacttttttttttcttc
tgtcaGTCCCCAGTAAAAAGCATATACACAACTTTCTTCTGTCTTTTCGT
TTACTCAACCAATATGaatcactttaatttttttattttctaccgTGTCC
CCTCACTTTTCATTGGGTTTCAATTCTGTTGCATGCTTGTTGTGTTGAAG
CTTGAGCTACTGTTGGTAGTGGAGAAGCTTCAAGAATTACGCTCCATGAG
gatacaaaagttgaaaaaacAAGGTAAATATATACGAAAGTCAGTCTGCT
TCTAAGTTTGTTGTAATTGTATTGCCCGTTGTGACTCAAGTGCTTCATGT
GTTTGCTTGGTAATTTTTCTCCAGCCCTGCAGCCATATATAACTTTTGAA
CTTCGTATCCTAATTTATCACCTTAAATTTAGAGTCCCGAATGATGGTGA
GCTTTGTcacaatggtaaggttgtttgccttgtgacctagaGGTCATAGG
TCCAATTgatcaaatcctgaaaacaactTTTTCGCTTGTAAAGGTAAGGG
TGCGTACATCTACCCCTAGACTCCACTAGATGGGAGTCGACTAGGCTGtc
cttttaaattttgagtcCTAAATGCAGTTTTGTGATAGATTAAATTCTTT
ATAAATCATGTGTGCCTGAGTTCAAGCTCTAGCACTTAGCCTTTTGATTG
GAGCTGAATAGTTACCTATTCACCTTGTAAATGTATATCTTTGACAAATT
TGTTCATTATCAATTGAAAATCATACATTTCTAGTTCAATAATAATGTAA
CAGGCATGATTTTTCTTGCTTTTCTAATTGGATTTTTCCAATATGTCTGT
CCTTTATGTGTGCAAGTGTGTGTATATTCATGTAAGTAACATGTGATTCA
TTTTACAAATTATGCAGGTCACTTTTTCCCAGAGGAAGATGACAAGTTTA
TTGAGAGTGTTCAGGCTGCTGTGGAAGCAGAGGAGCGTGATGCTTTGGCT
GCAGCTGAAACAGATGCTGCTAAAGATGCAATCGCAACTGCTGAGGAGTC
CAGGAAGGCTATTCAGAATCAAGGGAAACTCTCAAAAGGATGCGATGGTG
ATAAGCCAGTTGAGGAGAGAAAAGAGCAACTCGTTCACAGTGGAACTGAT
GAGGGTTCTGGTGCATTGGATGAGAAGAAATCTAGTAAAATAGCATCCGA
AGGACAGAGCAGCGGAGTATATGACCCTCTGGCAAATTTACCTATTGAGT
TCTATCATTATTATCATGGCAGTAACAATGACATGGGCACACTTATCGAG
GTATTTCAATTGAACTCTACATGTTTTGAGAAACAACACTTTTCTCCCTT
GTTTCTTTTGAGTACATATGTAATCAGTTGAATTTTCTAGGTACGAAGGC
TGCTAATTTTACTTTACTGACACCATTATAGCTTAATGGTGCTACTTTTT
TTTAACCAACTTATGTTTTTCTCGACTGCATGTTCATTATAAGCTCGAAA
TTATTAAGACTTCTGAATAACCTCATGCAGGTTAGAAGAGGATGGGATGC
CTATATCAGACCAGGAGGAAGGTAAGAAACAATAACAATGAAGCTTTTGT
gctaatatttcattttttttggcATATATTAGATTGCATTTCAAAACTGG
GTGAAACAAGGAGGGCACGAGGTCAagtcatttatattatatatatacca
cacacatatacatacatatatatatatatatatatatatatatatatatt
attcatgagATCATGACTCTGATCTGCCACCACAGTCTTTTATAACATCA
CGGATCTGTACAGTATATCATGTCATCCATACCACTGTTATTAAATCAAA
ATCCAGTGTTAGTGCTGCTATAATAGCTATGAGTGACCacaatttatttt
gatatttattgcCTATCATATAACCTTGACACTGTTGTCACCTGGCATGT
TCATCAGCTTACTAATTTCTAATTCAATCATTCCTTGTATCattgtgaaa
aatgaaaataaaaagtcTGATTATCTTGCTTACTTGGATGATTTTTTTCA
TTGCAACTTTGTACAGCCGCATACCAGGGCACTGGGTTCAGCCTCCTCCT
CCAGCCAATGAGATATATGCATCTTACTTAGTGAGGCCTAAATGA
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24359604..24363248+

>rna-TanjilR_23493_La_Tanjil_v1.0 ID=rna-TanjilR_23493_La_Tanjil_v1.0; Name=rna-TanjilR_23493; organism=Lupinus angustifolius; type=CDS; length=1236bp; location=Sequence derived from: Chr_LG08-CM007368.1:24359604..24363248+ (Lupinus angustifolius
ATGAATCCTATTTACTTTCAACCCGCACCACAACCTCGTCCTCATGTACC
TCTTCAATTTCCGTTATTACCGACTCAATCACCAAATTCATGTTCCTTTT
GGGAGAATAGGAATCTCTCTGAACGCCTCGGAGAATTGCAACATACTCTC
AATCTTGCTAAGGCAATGCAGAAGGAGCTAGAGATTTTAGAGATGGTAAA
AGATGCTAAGGGGGATTTAGAAGATGTAAAACGTAGCTTAAATGAACCTT
ATATCTCTGGTGTTTTGAAATGTATGGAAGATTTATGGGTTAGTATTGAA
ACCCAAGAATCGTTGTCTGTGGAAGCTGCGAATTCTTTGATTGTAAAGCT
TAAAGCTCAGCTAGAGCCATTCAGATATGTTGCGGATGAAGCAAGTCCAT
GGGAGGAGAAATCTGCAGCAGTTAGGTTTGAGAATAAAGTGCATAAATCA
AAACGAAATAAACTATggaggaagaaaaaaaggaagcGAATTGCAGAAAT
GCTGGCAAAGgagcatgagcaatttgaccaaatcaaCCGAGAAGCTGATG
AGTGGAGGGCTAGGGAGATCGCCAAGGACATTGCAAACATTAAGGTAGAA
AAGATGAAAGAAATTGCGAAGCTTAAAGctaaagaagagaagaagaaact
aGAATCTGAGCTTGAGCTACTGTTGGTAGTGGAGAAGCTTCAAGAATTAC
GCTCCATGAGgatacaaaagttgaaaaaacAAGGTCACTTTTTCCCAGAG
GAAGATGACAAGTTTATTGAGAGTGTTCAGGCTGCTGTGGAAGCAGAGGA
GCGTGATGCTTTGGCTGCAGCTGAAACAGATGCTGCTAAAGATGCAATCG
CAACTGCTGAGGAGTCCAGGAAGGCTATTCAGAATCAAGGGAAACTCTCA
AAAGGATGCGATGGTGATAAGCCAGTTGAGGAGAGAAAAGAGCAACTCGT
TCACAGTGGAACTGATGAGGGTTCTGGTGCATTGGATGAGAAGAAATCTA
GTAAAATAGCATCCGAAGGACAGAGCAGCGGAGTATATGACCCTCTGGCA
AATTTACCTATTGAGTTCTATCATTATTATCATGGCAGTAACAATGACAT
GGGCACACTTATCGAGGTTAGAAGAGGATGGGATGCCTATATCAGACCAG
GAGGAAGCCGCATACCAGGGCACTGGGTTCAGCCTCCTCCTCCAGCCAAT
GAGATATATGCATCTTACTTAGTGAGGCCTAAATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR031974PDCD7