rna-TanjilR_23456

Transcript Overview


Name	rna-TanjilR_23456
Unique Name	rna-TanjilR_23456_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	522
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG08-CM007368.1	supercontig	Chr_LG08-CM007368.1:24600518..24601039 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL126	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL254	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL541	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL592	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL607	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
anccR1451	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR1460	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR1469	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR1136	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1139	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1157	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anpsR0950	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0974	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0975	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1276	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1342	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1085	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1142	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1201	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR1272	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1088	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1119	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvfhR1133	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1124	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1189	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1176	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvrvR1071	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR1094	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1037	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR1097	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR1260	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1276	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR1036	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1038	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1191	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1244	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1101		Cicer arietinum
ancarR1105		Cicer arietinum
anccaR1080	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1098	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1245	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1276	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1176	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR1189	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvstR1234	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1245	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1266	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1275	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvunR1046	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1313	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR1105	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1383	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Phvul.011G041100.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Psat07G0422200-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Ca_15409	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-XM_004507430.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vfaba.Tiffany.R1.6g042440.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
LR48_mrnaVigan08g175800	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
jg30515.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Psat7g182600.1	Pisum sativum Cameor genome v1a	Pisum sativum
Cc_v2.0_09027.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vigun11g179300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Vigun11g179300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vum_06G01586.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
evm.model.Chr11.1674	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.6g051200.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigan.06G226700.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Va08G068170.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
rna-XM_014637367.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
XM_058879128.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
PvulFLAVERTChr11.262	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
rna-KK1_021877	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vigst.06G194600.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_23456	gene-TanjilG_23456_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23456	rna-TanjilR_23456_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_23456_La_Tanjil_v1.0	rna-TanjilR_23456_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23456_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039	rna-TanjilR_23456_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_23456_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039	rna-TanjilR_23456_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_23456 vs.

BLAST of rna-TanjilR_23456 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 102..120
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..101
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 84..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 52..66

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG08-CM007368.1:24600518..24601039-
coding sequence from alignment at Chr_LG08-CM007368.1:24600518..24601039-

mRNA sequence

>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=mRNA; length=522bp
ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT
CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG
AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC
ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA
TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC
ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT
GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA
TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA
TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA
TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT
GGGTCTTAAGCACAATTTCTAA

protein sequence of rna-TanjilR_23456_La_Tanjil_v1.0

>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=173bp
MENQSSSSSSQMQFLLLEQVEFLNVKDDSLFQWELVNVVDAEEDEESDNS
IEDGFGSWNSPGSSLKDAPIQDIRHILLHPDDDHVSRVEVKDHHHPHDDD
EVHDDDDGDDDGDDDLDDELIPWDVSNKMGRDRMRKLGKREFPKMHNSKR
SPYLFFSRGCVRGKHGLGLKHNF

mRNA from alignment at Chr_LG08-CM007368.1:24600518..24601039-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=mRNA; length=522bp; location=Sequence derived from: Chr_LG08-CM007368.1:24600518..24601039- (Lupinus angustifolius
ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT
CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG
AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC
ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA
TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC
ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT
GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA
TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA
TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA
TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT
GGGTCTTAAGCACAATTTCTAA

Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24600518..24601039-

>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=CDS; length=522bp; location=Sequence derived from: Chr_LG08-CM007368.1:24600518..24601039- (Lupinus angustifolius
ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT
CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG
AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC
ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA
TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC
ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT
GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA
TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA
TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA
TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT
GGGTCTTAAGCACAATTTCTAA

Search form

rna-TanjilR_23456