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Transcript Overview
Name | rna-TanjilR_23456 |
Unique Name | rna-TanjilR_23456_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 522 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23456 | rna-TanjilR_23456_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_23456_La_Tanjil_v1.0 | rna-TanjilR_23456_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23456_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039 | rna-TanjilR_23456_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_23456_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039 | rna-TanjilR_23456_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 102..120 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 84..101 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 41..67 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 84..123 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 52..66 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=mRNA; length=522bp ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT GGGTCTTAAGCACAATTTCTAA back to topprotein sequence of rna-TanjilR_23456_La_Tanjil_v1.0 >rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=173bp MENQSSSSSSQMQFLLLEQVEFLNVKDDSLFQWELVNVVDAEEDEESDNS IEDGFGSWNSPGSSLKDAPIQDIRHILLHPDDDHVSRVEVKDHHHPHDDD EVHDDDDGDDDGDDDLDDELIPWDVSNKMGRDRMRKLGKREFPKMHNSKR SPYLFFSRGCVRGKHGLGLKHNF back to topmRNA from alignment at Chr_LG08-CM007368.1:24600518..24601039- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=mRNA; length=522bp; location=Sequence derived from: Chr_LG08-CM007368.1:24600518..24601039- (Lupinus angustifolius ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT
CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG
AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC
ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA
TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC
ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT
GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA
TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA
TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA
TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT
GGGTCTTAAGCACAATTTCTAA back to topCoding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24600518..24601039- >rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=CDS; length=522bp; location=Sequence derived from: Chr_LG08-CM007368.1:24600518..24601039- (Lupinus angustifolius ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT GGGTCTTAAGCACAATTTCTAA back to top
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