rna-TanjilR_23456

Transcript Overview
Namerna-TanjilR_23456
Unique Namerna-TanjilR_23456_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length522
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG08-CM007368.1supercontigChr_LG08-CM007368.1:24600518..24601039 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL126Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL254Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL541Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL592Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
anccR1451Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1460Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1469Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1136Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1139Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1157Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anpsR0950Pisum sativum Cameor genome v1aPisum sativum
anpsR0974Pisum sativum Cameor genome v1aPisum sativum
anpsR0975Pisum sativum Cameor genome v1aPisum sativum
anpvR1276Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1342Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1085Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1142Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1201Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1272Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1088Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1119Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1133Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1124Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1189Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1176Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1071Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1094Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1037Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1097Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1260Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1276Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1036Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1038Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1191Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1244Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1101Cicer arietinum
ancarR1105Cicer arietinum
anccaR1080Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1098Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1245Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1276Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1176Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1189Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1234Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1245Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1266Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1275Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR1046Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1313Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR1105Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1383Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.011G041100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat07G0422200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Ca_15409Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004507430.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Tiffany.R1.6g042440.1Vicia faba cv. Tiffany genome v1.0Vicia faba
LR48_mrnaVigan08g175800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg30515.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Psat7g182600.1Pisum sativum Cameor genome v1aPisum sativum
Cc_v2.0_09027.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun11g179300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigun11g179300.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vum_06G01586.1Vigna umbellata FF25 genome v1.0Vigna umbellata
evm.model.Chr11.1674Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.6g051200.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.06G226700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Va08G068170.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
rna-XM_014637367.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
XM_058879128.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
PvulFLAVERTChr11.262Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-KK1_021877Cajanus cajan Asha genome v1.0Cajanus cajan
Vigst.06G194600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_23456gene-TanjilG_23456_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23456rna-TanjilR_23456_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_23456_La_Tanjil_v1.0rna-TanjilR_23456_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23456_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039rna-TanjilR_23456_La_Tanjil_v1.0-CDS-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_23456_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039rna-TanjilR_23456_La_Tanjil_v1.0-exon-Chr_LG08-CM007368.1_La_Tanjil_v1.0-1579734366:24600518..24601039Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23456 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 102..120
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 41..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..123
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..66

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=mRNA; length=522bp
ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT
CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG
AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC
ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA
TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC
ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT
GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA
TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA
TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA
TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT
GGGTCTTAAGCACAATTTCTAA
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protein sequence of rna-TanjilR_23456_La_Tanjil_v1.0

>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=173bp
MENQSSSSSSQMQFLLLEQVEFLNVKDDSLFQWELVNVVDAEEDEESDNS
IEDGFGSWNSPGSSLKDAPIQDIRHILLHPDDDHVSRVEVKDHHHPHDDD
EVHDDDDGDDDGDDDLDDELIPWDVSNKMGRDRMRKLGKREFPKMHNSKR
SPYLFFSRGCVRGKHGLGLKHNF
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mRNA from alignment at Chr_LG08-CM007368.1:24600518..24601039-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=mRNA; length=522bp; location=Sequence derived from: Chr_LG08-CM007368.1:24600518..24601039- (Lupinus angustifolius
ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT
CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG
AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC
ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA
TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC
ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT
GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA
TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA
TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA
TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT
GGGTCTTAAGCACAATTTCTAA
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Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:24600518..24601039-

>rna-TanjilR_23456_La_Tanjil_v1.0 ID=rna-TanjilR_23456_La_Tanjil_v1.0; Name=rna-TanjilR_23456; organism=Lupinus angustifolius; type=CDS; length=522bp; location=Sequence derived from: Chr_LG08-CM007368.1:24600518..24601039- (Lupinus angustifolius
ATGGAAAATCAATCATCATCATCATCATCACAGATGCAGTTCCTTCTCCT
CGAACAAGTTGAGTTTTTGAATGTCAAAGATGATTCTCTCTTTCAATGGG
AACTCGTCAACGTCGTTGATGCTGAAGAAGATGAAGAAAGCGATAACAGC
ATCGAAGATGGATTCGGTTCTTGGAATTCACCTGGTTCTTCTCTTAAGGA
TGCTCCAATTCAAGATATTCGTCATATCCTTCTACATCCTGATGATGATC
ATGTTTCACGTGTGGAAGTGAAAGATCACCACCATCCCCATGATGATGAT
GAGGTTCATGATGATGATGATGGTGATGATGATGGTGATGATGATTTGGA
TGATGAGCTTATACCTTGGGATGTGAGTAACAAGATGGGAAGGGATAGAA
TGAGGAAATTGGGGAAAAGAGAATTTCCAAAGATGCATAATTCTAAGAGA
TCTCCTTATCTTTTTTTCAGCCGTGGATGTGTTCGTGGAAAACATGGTTT
GGGTCTTAAGCACAATTTCTAA
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