Homology
BLAST of rna-TanjilR_23355 vs. DB:Swiss
Match:
PPR64_ARATH (Pentatricopeptide repeat-containing protein At1g30610, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=EMB2279 PE=3 SV=1)
HSP 1 Score: 215.698 bits (548), Expect = 1.921e-55
Identity = 94/151 (62.25%), Postives = 122/151 (80.79%), Query Frame = 2
Query: 5039 VCLVFLQIDKICKVANKPLVVTYTGLMQACLDCGNIQDGAFIFEKMKEICAPNLVTFNILLKGYLDHGMFQEAKELFEKMLENKNHRRENTDYKMLVTPDIYTFNTMLDACVAEKRWDHFDDIYLRMFQHGYHFNAKRHLRMVLEASRAGK 5491
V + Q+ KIC+VANKPLVVTYTGL+QAC+D GNI++ A+IF++MK++C+PNLVT NI+LK YL G+F+EA+ELF+KM E+ NH + ++D++ V PD YTFNTMLD C +++WD F Y M +HGYHFNAKRHLRMVLEASRAGK
Sbjct: 741 VHTIQFQLKKICRVANKPLVVTYTGLIQACVDSGNIKNAAYIFDQMKKVCSPNLVTCNIMLKAYLQGGLFEEARELFQKMSEDGNHIKNSSDFESRVLPDTYTFNTMLDTCAEQEKWDDFGYAYREMLRHGYHFNAKRHLRMVLEASRAGK 891 HSP 2 Score: 136.346 bits (342), Expect = 1.256e-30
Identity = 72/127 (56.69%), Postives = 83/127 (65.35%), Query Frame = 3
Query: 2580 VRHIYTAALDVLRKSRRPVEALNMFNAMLVMVVIHAV*YLTTFLNMTWEYGXXXXXXXXXXXXXMATYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGPFEKWDPRLEPDSVVYDAV 2960
+R IYT AL+VL KSRRPVEALN+F+AML+ + ++YPD+VAYRSIAVTLGQAGH+KELF VID MRSPPKKKFK EKWDPRLEPD VVY+AV
Sbjct: 506 IRIIYTTALNVLGKSRRPVEALNVFHAMLLQI---------------------------------SSYPDMVAYRSIAVTLGQAGHIKELFYVIDTMRSPPKKKFKPTTLEKWDPRLEPDVVVYNAV 599 HSP 3 Score: 103.605 bits (257), Expect = 1.136e-20
Identity = 44/64 (68.75%), Postives = 57/64 (89.06%), Query Frame = 2
Query: 2060 LNGTDIDLPEWLFSKAIRSAKIKFNDYSITRVIILLGNLGNWQRVIQVIEWLQRRERFKSNKLR 2251
LNG DI++PEW FSKAIRSAKI++ DY++ R+I LG LGNW+RV+QVIEWLQR++R+KSNK+R
Sbjct: 444 LNGADINMPEWQFSKAIRSAKIRYTDYTVMRLIHFLGKLGNWRRVLQVIEWLQRQDRYKSNKIR 507 HSP 4 Score: 103.605 bits (257), Expect = 1.280e-20
Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 4066 ILTFLLYAVLVNTLWKEGKTDQAVLTVQEMENRGIVGSASIYYDLARCLCSAGRIHEGLMQVIFVIP 4266
I L Y VLVNTLWKEGK+D+AV TV++ME+RGIVGSA++YYDLARCLCSAGR +EGL V FV P
Sbjct: 659 IPNALAYRVLVNTLWKEGKSDEAVHTVEDMESRGIVGSAALYYDLARCLCSAGRCNEGLNMVNFVNP 725 HSP 5 Score: 75.8702 bits (185), Expect = 3.572e-12
Identity = 31/41 (75.61%), Postives = 37/41 (90.24%), Query Frame = 1
Query: 3151 VLNACVKGKQWEGAFWVLQQLKKEGQQPSATTYGLVMEVII 3273
VLNACV+ KQWEGAFWVLQQLK+ GQ+PS TYGL+MEV++
Sbjct: 599 VLNACVQRKQWEGAFWVLQQLKQRGQKPSPVTYGLIMEVML 639 HSP 6 Score: 68.9366 bits (167), Expect = 5.169e-10
Identity = 37/109 (33.94%), Postives = 68/109 (62.39%), Query Frame = 1
Query: 5878 LEITWKYLANTGRVPPPPLVKEMLCLKLEKDDYVSALTCITNNSPK----DLQPFSKSSWLNLFKDNSQRFQKDRLVRLMNEAXXX-XXXXXXXXXILVYLMQSCKEFL 6189
+E TW+++ + R+PP PL+KE KLEK D++SA++ + + + K +L+ FS S+W + RF++D ++RLM++ + S S + + +L L+ SCK++L
Sbjct: 895 MEATWEHMRRSNRIPPSPLIKERFFRKLEKGDHISAISSLADLNGKIEETELRAFSTSAWSRVL----SRFEQDSVLRLMDDVNRRLGSRSESSDSVLGNLLSSCKDYL 999
BLAST of rna-TanjilR_23355 vs. DB:Swiss
Match:
PP451_ARATH (Pentatricopeptide repeat-containing protein At5g67570, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=DG1 PE=1 SV=2)
HSP 1 Score: 114.005 bits (284), Expect = 5.979e-24
Identity = 61/170 (35.88%), Postives = 99/170 (58.24%), Query Frame = 2
Query: 5042 CLVFLQIDKICKVAN-KPLVVTYTGLMQACLDCGNIQDGAFIFEKMKEICAPNLVTFNILLKGYLDHGMFQEAKELFEKMLENKNHRRENTDYKMLVTPDIYTFNTMLDACVAEKRWDHFDDIYLRMFQHGYHFNAKRHLRMVLEASRAGKVTFLFFFVQIHLF*IILYD 5548
C L++ ++ ++ N +PL +T+TGL+ A L+ G++ D IF+ MK+ C PN+ T N++LK Y + MF EAKELFE+++ K + P+ YT++ ML+A +W++F+ +Y M GY + +H M++EASRAGK + L H F +L D
Sbjct: 463 CDAMLEVGRMKRLENCRPLEITFTGLIAASLNGGHVDDCMAIFQYMKDKCDPNIGTANMMLKVYGRNDMFSEAKELFEEIVSRKETH---------LVPNEYTYSFMLEASARSLQWEYFEHVYQTMVLSGYQMDQTKHASMLIEASRAGKWSLLE-----HAFDAVLED 618 HSP 2 Score: 83.1889 bits (204), Expect = 1.888e-14
Identity = 51/126 (40.48%), Postives = 60/126 (47.62%), Query Frame = 3
Query: 2583 RHIYTAALDVLRKSRRPVEALNMFNAMLVMVVIHAV*YLTTFLNMTWEYGXXXXXXXXXXXXXMATYPDLVAYRSIAVTLGQAGHMKELFDVIDIMRSPPKKKFKTGPFEKWDPRLEPDSVVYDAV 2960
R +YT L VL +RRP EAL +FN ML YPD+ AY IAVTLGQAG +KEL VI+ MR P K K + WDP LEPD VVY+A+
Sbjct: 255 RFVYTKLLSVLGFARRPQEALQIFNQML---------------------------------GDRQLYPDMAAYHCIAVTLGQAGLLKELLKVIERMRQKPTKLTKNLRQKNWDPVLEPDLVVYNAI 347 HSP 3 Score: 67.3958 bits (163), Expect = 2.256e-13
Identity = 28/67 (41.79%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 4078 LLYAVLVNTLWKEGKTDQAVLTVQEMENRGIVGSASIYYDLARCLCSAGRIHEGLMQVIFVIPTSSC 4278
+ Y VLV LW+EGK ++AV V++ME +G++G+ S+YY+LA CLC+ GR + +++V + +C
Sbjct: 412 ITYKVLVRALWREGKIEEAVEAVRDMEQKGVIGTGSVYYELACCLCNNGRWCDAMLEVGRMKRLENC 478 HSP 4 Score: 32.7278 bits (73), Expect = 2.256e-13
Identity = 14/32 (43.75%), Postives = 22/32 (68.75%), Query Frame = 3
Query: 3924 QVMFSCGKYKLVHEFFRKLQKS-YIPNSLTYR 4016
+VM GK+ VH+FFRK++ S P ++TY+
Sbjct: 384 EVMLESGKFDRVHDFFRKMKSSGEAPKAITYK 415
BLAST of rna-TanjilR_23355 vs. DB:Swiss
Match:
PP395_ARATH (Pentatricopeptide repeat-containing protein At5g21222 OS=Arabidopsis thaliana OX=3702 GN=ATC401 PE=2 SV=1)
HSP 1 Score: 62.003 bits (149), Expect = 6.000e-8
Identity = 51/162 (31.48%), Postives = 69/162 (42.59%), Query Frame = 2
Query: 5060 IDKICKVANKPLVVTYTGLMQACLDCGNIQDGAFIFEKMKEI-CAPNLVTFNILLKGYLDHGMFQEAKELFEKMLENK-----------------NHRR----ENTDYKML---VTPDIYTFNTMLDA-------CVAEKRWDHFDDIYLRMFQHGYHFNAK 5449
I K+ K KP + + ++ A + GN+ IFEKMKE C P TFN L+KGY G +E+ L + ML ++ N R+ N YKM V PD+ TFNT+ A C AE D I RM + N +
Sbjct: 377 ISKVEKNGLKPDTILFNAIINASSESGNLDQAMKIFEKMKESGCKPTASTFNTLIKGYGKIGKLEESSRLLDMMLRDEMLQPNDRTCNILVQAWCNQRKIEEAWNIVYKMQSYGVKPDVVTFNTLAKAYARIGSTCTAE------DMIIPRMLHNKVKPNVR 532
BLAST of rna-TanjilR_23355 vs. DB:Swiss
Match:
PPR38_ARATH (Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g12700 PE=3 SV=1)
HSP 1 Score: 60.8474 bits (146), Expect = 1.033e-7
Identity = 35/116 (30.17%), Postives = 61/116 (52.59%), Query Frame = 2
Query: 5087 KPLVVTYTGLMQACLDCGNIQDGAFIFEKM--KEICAPNLVTFNILLKGYLDHGMFQEAKELFEKMLENKNHRRENTDYKMLVTPDIYTFNTMLDACVAEKRWDHFDDIYLRMFQH 5428
K VVTY L++ G DGA + + M +EI PN++TFN+LL ++ G QEA EL+++M+ ++P+I T+NT++D + R +++ M ++
Sbjct: 260 KSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREI-VPNVITFNVLLDVFVKEGKLQEANELYKEMITRG------------ISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRN 362
BLAST of rna-TanjilR_23355 vs. DB:Swiss
Match:
PPR92_ARATH (Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62680 PE=2 SV=2)
HSP 1 Score: 60.4622 bits (145), Expect = 1.450e-7
Identity = 34/116 (29.31%), Postives = 59/116 (50.86%), Query Frame = 2
Query: 5087 KPLVVTYTGLMQACLDCGNIQDGAFIFEKM-KEICAPNLVTFNILLKGYLDHGMFQEAKELFEKMLENKNHRRENTDYKMLVTPDIYTFNTMLDACVAEKRWDHFDDIYLRMFQHG 5431
+P VVTYT L+ + D A + M K+ PN++T++ LL ++ +G EAKELFE+M+ +M + PDI T++++++ R D + ++ M G
Sbjct: 222 RPNVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV------------RMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKG 325
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_23355 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 5
500 1000 1500 2000 2500 3000 3500 4000 4500 5000 5500 6000 Expect = 1.14e-20 / Id = 62.25 Expect = 1.26e-30 / Id = 62.25 Expect = 3.57e-12 / Id = 62.25 Expect = 1.28e-20 / Id = 62.25 Expect = 1.92e-55 / Id = 62.25 Expect = 5.17e-10 / Id = 62.25 Expect = 1.89e-14 / Id = 35.88 Expect = 2.26e-13 / Id = 35.88 Expect = 2.26e-13 / Id = 35.88 Expect = 5.98e-24 / Id = 35.88 Expect = 6.00e-8 / Id = 31.48 Expect = 1.03e-7 / Id = 30.17 Expect = 1.45e-7 / Id = 29.31 Sequence PPR64_ARATH PP451_ARATH PP395_ARATH PPR38_ARATH PPR92_ARATH
Match Name E-value Identity Description
PPR64_ARATH 1.921e-55 62.25 Pentatricopeptide repeat-containing protein At1g30... [more] PP451_ARATH 5.979e-24 35.88 Pentatricopeptide repeat-containing protein At5g67... [more] PP395_ARATH 6.000e-8 31.48 Pentatricopeptide repeat-containing protein At5g21... [more] PPR38_ARATH 1.033e-7 30.17 Putative pentatricopeptide repeat-containing prote... [more] PPR92_ARATH 1.450e-7 29.31 Pentatricopeptide repeat-containing protein At1g62... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_23355_La_Tanjil_v1.0 ID=rna-TanjilR_23355_La_Tanjil_v1.0; Name=rna-TanjilR_23355; organism=Lupinus angustifolius; type=mRNA; length=6276bp back to top protein sequence of rna-TanjilR_23355_La_Tanjil_v1.0
>rna-TanjilR_23355_La_Tanjil_v1.0 ID=rna-TanjilR_23355_La_Tanjil_v1.0; Name=rna-TanjilR_23355_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=905bp back to top mRNA from alignment at Chr_LG08-CM007368.1:25268107..25274382+
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_23355_La_Tanjil_v1.0 ID=rna-TanjilR_23355_La_Tanjil_v1.0; Name=rna-TanjilR_23355; organism=Lupinus angustifolius; type=mRNA; length=6276bp; location=Sequence derived from: Chr_LG08-CM007368.1:25268107..25274382+ (Lupinus angustifoliusATGGGACTTCTTAGCTTTGATATCAATGCCATTTCTCCTTCTACTTTTCA
TTATGCTTCCATTTCCTCTTTCTCTTCATACGCAATTCCAATTTCTCCGA
TACCCTTTTCAGGTAATGTTCTCAATACCAGAGTTTTAACCAAGTTTCAC
CTTTTTTATTCCCCCAACCTCAAATTTGTGCTGCCACTCAGTGCTTCCTC
GCTCAATGATGCTTCCAATGTTGGGTTGGTTAGTGACGCGATTAATCCTA
AAGACTTGGAATTTAAGCCTTCCTTTGATGAATATTTGAAGGCTATGGAA
TCCAGAACTTCAAGGAAGAAAAAGCGTGCTTCTACTACTGATACCACATC
TCAAAAACAGAATGTGAGGGAAAAGGGAGAAGAAGGTgataaaaaagttg
aaagggTTGGAGAGAAAATTGATGGAAAAGAAGAGTTTGAAGCTGCTAAA
GAGGACGGGAAAACTATAGCTATGTATAAAGAAGAACGTTCATCGACCAG
TGATGTTACTGTGAGACAGAGAAATACTAAAGGGTTTAAAAATGAGCACG
GTAGGAaagaaagccaaattgatgtaAAGGGAAAGCAGAAACGTGAGGCA
AATGTAAGAGAAGATGTGTGGTCGAAACAAAAGAGTCATGATAGTTTAGA
ACCTGAATCTGACGGCAAAAGTGGGAGTGGAAGTGGTAGGATAAGCAATA
GCATAACCAGGCCTAATTCAAATTATAGCCTCGGAGAGAAGGTAGTTAGT
AACAGACAAAGGGATTACAATACACATGGTAAAGGTTCTGGTGGAAATAA
GACTGTAGTTAGAAATAAAGTTATGGACACAGGGGCTGGGAGAAGAAATA
CTGAGATTGAGAGTGTTGTGAACAGAAGCGTACCggaaaatgtcaaactg
aatAGAAACAGTAAGCGTTTCATTGACAGGGGCTATGATTCTGACAATGT
GGAGGTGGAACGAGCTGCATTCACGAACTTGGAGGTTATCAACAGGATAC
AATTTTCACACAAGGAACTGGAGGAGAGAATCCAAAAGCTTGCAAGATT GTTGAATGGCACAGATATCGATTTGCCTGAATGGTTGTTCTC
TAAAGCGATCAGAAGTGCGAAAATCAAATTTAATGACTACTCTATAACTA
GGGTTATCATACTCTTGGGAAATCTAGGGAACTGGCAGCGGGTGATACAG
GTTATTGAATGGCTTCAAAGGCGTGAGCGTTTCAAATCCAATAAGCTAAG
GCATATATACACTGCT
GCTCTTGATGTCCTCAGAAAGTCAAGGAGACCTGTAGAGGCACTAAATAT
GTTTAATGCAATGCTG CAACAAATGGCCACATATCCTGATTTAGTAGCTTA
TCGTAGTATTGCTGTTACTCTTGGACAAGCAGGGCATATGAAGGAACTCT
TCGATGTGATTGATATTATGCGATCACCGCCAAAAAAGAAGTTCAAAACA
GGGCCATTTGAGAAGTGGGACCCAAGGCTGGAGCCAGATAGTGTAGTCTA
TGATGCA GTCCTTAATGCTTGTGTCAAGGGGAAGCAATGGGAAGGAGCCTTTTGGGT
TTTACAGCAGTTAAAGAAGGAAGGCCAACAACCCTCTGCTACAACTTATG
GCCTAGTTATGGAG GTGATGTTTTCATGTGGCAAGTAC
AAGTTGGTTCATGAATTTTTCAGAAAACTTCAAAAGTCTTATATTCCCAA
TTCATTGACATATAGAG TTCTCGTCAA
CACACTTTGGAAAGAGGGAAAAACTGATCAGGCTGTATTGACTGTGCAAG
AAATGGAAAATCGTGGAATTGTAGGTTCTGCTTCTATTTATTATGACCTA
GCTCGATGCCTTTGTTCTGCTGGAAGAATTCATGAGGGACTGATGCAG ATAGACAAGATATGCAAGGTTGCAAATAAACCACTGGTAGT
GACCTACACTGGCTTGATGCAAGCATGTCTAGACTGTGGAAACATTCAAG
ATGGGGCGTTTATTTttgagaaaatgaaggaaatttgTGCTCCGAATCTG
GTTACTTTTAACATATTGCTGAAAGGTTACCTGGACCATGGGATGTTTCA
AGAAGCTAAAGAGTTGTTTGAGAAGATGttagaaaacaaaaatcatCGGA
GGGAAAATACTGATTACAAAATGCTGGTAACGCCAGATATTTACACATTC
AACACCATGTTGGATGCGTGTGTTGCAGAGAAGAGATGGGATCATTTTGA
TGATATCTATCTAAGAATGTTCCAGCATGGTTACCACTTCAATGCAAAAC
GTCATCTTCGAATGGTACTGGAGGCTTCAAGAGCTGGAAAG ATAGGGCCTTTGGAGATAACATGGAAGTACTT
AGCCAATACCGGTCGCGTTCCGCCACCTCCTCTGGTGAAGGAGATGTTAT
GTCTGAAGCTTGAAAAGGATGACTATGTTTCTGCCCTCACATGTATCACC
AATAATTCCCCAAAAGACTTGCAGCCATTTTCCAAATCATCATGGTTGAA
TCTATTCAAAGATAATTCTCAACGGTTTCAGAAGGATAGGCTTGTTAGAC
TAATGAATGAGGCTAGCAGTGTAGTTTCCAATAGTAGCACACCAAACCCA
ATTCTAGTGTATCTAATGCAATCATGCAAAGAGTTTTTATGTGCTAGTGA
CCTTAGTGTAGCTGATAAGGATTCAGCTGGAACCGTATTTGCAGTAGAAA
ATAATCTTGCAGCATGcttaagatga back to top Coding sequence (CDS) from alignment at Chr_LG08-CM007368.1:25268107..25274382+
>rna-TanjilR_23355_La_Tanjil_v1.0 ID=rna-TanjilR_23355_La_Tanjil_v1.0; Name=rna-TanjilR_23355; organism=Lupinus angustifolius; type=CDS; length=2718bp; location=Sequence derived from: Chr_LG08-CM007368.1:25268107..25274382+ (Lupinus angustifolius back to top
