rna-TanjilR_18626

Transcript Overview
Namerna-TanjilR_18626
Unique Namerna-TanjilR_18626_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length2149
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG09-CM007369.1supercontigChr_LG09-CM007369.1:7587977..7590125 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL572Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1397Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1400Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1402Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1403Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1537Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1192Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1200Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1203Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1409Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0998Pisum sativum Cameor genome v1aPisum sativum
anpsR1027Pisum sativum Cameor genome v1aPisum sativum
anpvR1348Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1396Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1152Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1195Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1196Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1309Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1139Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1177Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1228Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1212Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1253Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1234Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1141Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1173Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1104Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1146Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1147Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1332Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1357Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1082Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1092Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1286Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1293Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1147Cicer arietinum
ancarR1152Cicer arietinum
anccaR1141Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1153Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1291Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1297Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1340Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1216Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1217Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1220Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1256Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1333Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1341Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1368Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1358Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1116Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1159Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1388Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1440Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_18626gene-TanjilG_18626_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_18626rna-TanjilR_18626_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_18626_La_Tanjil_v1.0rna-TanjilR_18626_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408Lupinus angustifoliusexon
rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408Lupinus angustifoliusCDS
rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_18626 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036610PEBP-like superfamilyGENE3D3.90.280.10coord: 3..168
e-value: 2.1E-37
score: 130.6
IPR036610PEBP-like superfamilySUPERFAMILY49777PEBP-likecoord: 20..168
IPR005247YbhB/YbcLTIGRFAMTIGR00481TIGR00481coord: 35..166
e-value: 2.6E-24
score: 83.6
IPR005247YbhB/YbcLCDDcd00865PEBP_bact_archcoord: 7..168
e-value: 1.58926E-41
score: 134.265
IPR008914Phosphatidylethanolamine-binding proteinPFAMPF01161PBPcoord: 35..168
e-value: 8.5E-25
score: 87.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..21

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626; organism=Lupinus angustifolius; type=mRNA; length=2149bp
ATGGCAAAAAATGAATTCACGTTGGTTTCACCAGCAACAGACAATGAAGG
AGGTGAAAAACTACCAAGATACTGCACCCAGCAAGGCCTAGGCGCAAAGT
GGGACATATCTCCACCACTGGAATGGCACAACGTGCCATCCAAAACTAAG
AGCTTGGCCCTTGTGGTGCAGGACGTGGATGCTGTGGACCCAACTGGGCG
AAAGGTGCCATTCACACACTGGGTGGTGGTGAACATTCCGGTAACTGTTA
AGCGGCTACCGGAAGGACTTTCAGGTAAGGTGGAGGAAGAGGGTGGGGAG
TATGTTGGGATTGCAGAAGGGATTAACGATTGGAAGGTGAATGTGTGGCG
TGGTCCAAAGATTGATAACTATTGTGATAGGTTTGAGTTCAGACTCTATG
CTATCAGTGAAGACATGCACTTTGACAACCAGGTACTAGATAGcttaagc
cttgaatttaagttattcattttgaaaacatatttttgtaGGTTACCTAG
GCAAGTGTCGTTTCTTCTAATTGAACTATTAGAGTCCTATACTATTAAAT
CAATGATTTcgttatttttgtttgatacAACCCAATGATTTTAGACTTTA
TCTTAATTCATTTGAttactaaaatgaaatatttgtggATAAATTTGTTT
TGCACTAGAGAAGTTGTCCAAATGTTGGTTATTGTACAAGGAGTCctact
aatattttttgtgaaaaggAAGAAGAGTACGTGAAAGAAGAGAGAAACAC
AAGTGTccaatatagaaaataaaagtgataagGTTTCTTTTTATTCTAAG
ATTTCTAAGAACACATTAACTAATTTGATTTGGTTATTTAAACCAAATAT
TTGTGGAGGAAATTCTTTTACAAGAGAAGAGTTGTCCAAAACTTGGTTTT
TAGTACAAGGAGTCCTATTATTAAATgcacaataacaacaaaatttaatc
ATGACACGTATTCGACACCGTATAcctttattgatttttctaaTGGGTTC
TTAAGACAAGTGGCTGGTTATTAGTTATTTTCcatataaaggaaataaaa
taaatttgttatttgAACACTGTCCATTATTGTTTTGAAAAGTACATAAA
TTTCTCTTTTGGCGGCAAAGAATGTGCAAATTAACACACGTCAGAAACTC
TCTTCATATTTATCACttcataaatatttacaaaaacACGTGACATTCAT
TTATATCTACATTTCTATGTacataaaatattcattagTCTCCCTGTATG
GTGTATATTTAATGAGAAAACCTTCTGACCGTgagaaataacaaataaat
tttaattaattgatactATTCCAATTAGAGATGGCAATGAAGATGAACAG
GCATGGTTAGTAGccattttgaaatataatatcattattctTACCGGTAT
TTATATGTGTATCCATATGTGGGTTTTTCACATGTATTTATGAATACCTG
CAGATATAATGGATGCCTACAAGTTTTCTATGTTATCAATGAATTTCTAA
CTTTTTATCTCTATTATGTTTCACATAAGATGAaacttatttgttttttg
tgcCTTTTGATTGGACAtttgataaaaatgttaaatctattgaagttttc
tatttgtttatttgttctcattttcttaacaaaataaaagtttctttgca
agacatgtgtgtttcaccaccaaattataaggttaaaaaatgtaaacaaa
gtaaaagaaaaagatatatcaaAGTCTAATGATGGTTAGAGtagtttaca
tttttattttaattaaaggtaatatattaatcacATAAATAATGGGTATC
CACATATACGAGTACCACAATATCGGTATCCTCCCGTATATACTAtgact
atttttaaaaactcgtaTGTAAAATCTGTGGGTACTCATTTATGACTTAT
GTCCGAATGGATGTTACTCACAGATATGAGttttttgtcatctctaatTC
TAATAGGTCATATTTGGAAAATCAAAAGCACATacttagttatatatata
tttgatcagaaaaatacttttGTTCTTCGATAAGttgtaaatataaataa
ttttttttatccaaacaTTGGCAGGTGACGAAGGAGAAGCTCTTGGACAC
TATAACAGGGCATGTGGTGGGAGAGGCAGTATTGACTGCTACTTTCTAA
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protein sequence of rna-TanjilR_18626_La_Tanjil_v1.0

>rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=168bp
MAKNEFTLVSPATDNEGGEKLPRYCTQQGLGAKWDISPPLEWHNVPSKTK
SLALVVQDVDAVDPTGRKVPFTHWVVVNIPVTVKRLPEGLSGKVEEEGGE
YVGIAEGINDWKVNVWRGPKIDNYCDRFEFRLYAISEDMHFDNQVTKEKL
LDTITGHVVGEAVLTATF
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mRNA from alignment at Chr_LG09-CM007369.1:7587977..7590125+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626; organism=Lupinus angustifolius; type=mRNA; length=2149bp; location=Sequence derived from: Chr_LG09-CM007369.1:7587977..7590125+ (Lupinus angustifolius
ATGGCAAAAAATGAATTCACGTTGGTTTCACCAGCAACAGACAATGAAGG
AGGTGAAAAACTACCAAGATACTGCACCCAGCAAGGCCTAGGCGCAAAGT
GGGACATATCTCCACCACTGGAATGGCACAACGTGCCATCCAAAACTAAG
AGCTTGGCCCTTGTGGTGCAGGACGTGGATGCTGTGGACCCAACTGGGCG
AAAGGTGCCATTCACACACTGGGTGGTGGTGAACATTCCGGTAACTGTTA
AGCGGCTACCGGAAGGACTTTCAGGTAAGGTGGAGGAAGAGGGTGGGGAG
TATGTTGGGATTGCAGAAGGGATTAACGATTGGAAGGTGAATGTGTGGCG
TGGTCCAAAGATTGATAACTATTGTGATAGGTTTGAGTTCAGACTCTATG
CTATCAGTGAAGACATGCACTTTGACAACCAGGTACTAGATAGcttaagc
cttgaatttaagttattcattttgaaaacatatttttgtaGGTTACCTAG
GCAAGTGTCGTTTCTTCTAATTGAACTATTAGAGTCCTATACTATTAAAT
CAATGATTTcgttatttttgtttgatacAACCCAATGATTTTAGACTTTA
TCTTAATTCATTTGAttactaaaatgaaatatttgtggATAAATTTGTTT
TGCACTAGAGAAGTTGTCCAAATGTTGGTTATTGTACAAGGAGTCctact
aatattttttgtgaaaaggAAGAAGAGTACGTGAAAGAAGAGAGAAACAC
AAGTGTccaatatagaaaataaaagtgataagGTTTCTTTTTATTCTAAG
ATTTCTAAGAACACATTAACTAATTTGATTTGGTTATTTAAACCAAATAT
TTGTGGAGGAAATTCTTTTACAAGAGAAGAGTTGTCCAAAACTTGGTTTT
TAGTACAAGGAGTCCTATTATTAAATgcacaataacaacaaaatttaatc
ATGACACGTATTCGACACCGTATAcctttattgatttttctaaTGGGTTC
TTAAGACAAGTGGCTGGTTATTAGTTATTTTCcatataaaggaaataaaa
taaatttgttatttgAACACTGTCCATTATTGTTTTGAAAAGTACATAAA
TTTCTCTTTTGGCGGCAAAGAATGTGCAAATTAACACACGTCAGAAACTC
TCTTCATATTTATCACttcataaatatttacaaaaacACGTGACATTCAT
TTATATCTACATTTCTATGTacataaaatattcattagTCTCCCTGTATG
GTGTATATTTAATGAGAAAACCTTCTGACCGTgagaaataacaaataaat
tttaattaattgatactATTCCAATTAGAGATGGCAATGAAGATGAACAG
GCATGGTTAGTAGccattttgaaatataatatcattattctTACCGGTAT
TTATATGTGTATCCATATGTGGGTTTTTCACATGTATTTATGAATACCTG
CAGATATAATGGATGCCTACAAGTTTTCTATGTTATCAATGAATTTCTAA
CTTTTTATCTCTATTATGTTTCACATAAGATGAaacttatttgttttttg
tgcCTTTTGATTGGACAtttgataaaaatgttaaatctattgaagttttc
tatttgtttatttgttctcattttcttaacaaaataaaagtttctttgca
agacatgtgtgtttcaccaccaaattataaggttaaaaaatgtaaacaaa
gtaaaagaaaaagatatatcaaAGTCTAATGATGGTTAGAGtagtttaca
tttttattttaattaaaggtaatatattaatcacATAAATAATGGGTATC
CACATATACGAGTACCACAATATCGGTATCCTCCCGTATATACTAtgact
atttttaaaaactcgtaTGTAAAATCTGTGGGTACTCATTTATGACTTAT
GTCCGAATGGATGTTACTCACAGATATGAGttttttgtcatctctaatTC
TAATAGGTCATATTTGGAAAATCAAAAGCACATacttagttatatatata
tttgatcagaaaaatacttttGTTCTTCGATAAGttgtaaatataaataa
ttttttttatccaaacaTTGGCAGGTGACGAAGGAGAAGCTCTTGGACAC
TATAACAGGGCATGTGGTGGGAGAGGCAGTATTGACTGCTACTTTCTAA
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Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:7587977..7590125+

>rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626; organism=Lupinus angustifolius; type=CDS; length=507bp; location=Sequence derived from: Chr_LG09-CM007369.1:7587977..7590125+ (Lupinus angustifolius
ATGGCAAAAAATGAATTCACGTTGGTTTCACCAGCAACAGACAATGAAGG
AGGTGAAAAACTACCAAGATACTGCACCCAGCAAGGCCTAGGCGCAAAGT
GGGACATATCTCCACCACTGGAATGGCACAACGTGCCATCCAAAACTAAG
AGCTTGGCCCTTGTGGTGCAGGACGTGGATGCTGTGGACCCAACTGGGCG
AAAGGTGCCATTCACACACTGGGTGGTGGTGAACATTCCGGTAACTGTTA
AGCGGCTACCGGAAGGACTTTCAGGTAAGGTGGAGGAAGAGGGTGGGGAG
TATGTTGGGATTGCAGAAGGGATTAACGATTGGAAGGTGAATGTGTGGCG
TGGTCCAAAGATTGATAACTATTGTGATAGGTTTGAGTTCAGACTCTATG
CTATCAGTGAAGACATGCACTTTGACAACCAGGTGACGAAGGAGAAGCTC
TTGGACACTATAACAGGGCATGTGGTGGGAGAGGCAGTATTGACTGCTAC
TTTCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR036610PEBP-like_sf
IPR005247YbhB_YbcL/LppC-like
IPR008914PEBP