Transcript Overview
| Name | rna-TanjilR_18626 |
|---|
| Unique Name | rna-TanjilR_18626_La_Tanjil_v1.0 |
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| Type | mRNA |
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| Organism | Lupinus angustifolius (blue lupin) |
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| Sequence length | 2149 |
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| Product | hypothetical protein |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_18626 | rna-TanjilR_18626_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_18626_La_Tanjil_v1.0 | rna-TanjilR_18626_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408 | rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408 | Lupinus angustifolius | exon |
| rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125 | rna-TanjilR_18626_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408 | rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7587977..7588408 | Lupinus angustifolius | CDS |
| rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125 | rna-TanjilR_18626_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:7590051..7590125 | Lupinus angustifolius | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR036610 | PEBP-like superfamily | GENE3D | 3.90.280.10 | | coord: 3..168
e-value: 2.1E-37
score: 130.6 |
| IPR036610 | PEBP-like superfamily | SUPERFAMILY | 49777 | PEBP-like | coord: 20..168 |
| IPR005247 | YbhB/YbcL | TIGRFAM | TIGR00481 | TIGR00481 | coord: 35..166
e-value: 2.6E-24
score: 83.6 |
| IPR005247 | YbhB/YbcL | CDD | cd00865 | PEBP_bact_arch | coord: 7..168
e-value: 1.58926E-41
score: 134.265 |
| IPR008914 | Phosphatidylethanolamine-binding protein | PFAM | PF01161 | PBP | coord: 35..168
e-value: 8.5E-25
score: 87.6 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..21 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626; organism=Lupinus angustifolius; type=mRNA; length=2149bp
ATGGCAAAAAATGAATTCACGTTGGTTTCACCAGCAACAGACAATGAAGG
AGGTGAAAAACTACCAAGATACTGCACCCAGCAAGGCCTAGGCGCAAAGT
GGGACATATCTCCACCACTGGAATGGCACAACGTGCCATCCAAAACTAAG
AGCTTGGCCCTTGTGGTGCAGGACGTGGATGCTGTGGACCCAACTGGGCG
AAAGGTGCCATTCACACACTGGGTGGTGGTGAACATTCCGGTAACTGTTA
AGCGGCTACCGGAAGGACTTTCAGGTAAGGTGGAGGAAGAGGGTGGGGAG
TATGTTGGGATTGCAGAAGGGATTAACGATTGGAAGGTGAATGTGTGGCG
TGGTCCAAAGATTGATAACTATTGTGATAGGTTTGAGTTCAGACTCTATG
CTATCAGTGAAGACATGCACTTTGACAACCAGGTACTAGATAGcttaagc
cttgaatttaagttattcattttgaaaacatatttttgtaGGTTACCTAG
GCAAGTGTCGTTTCTTCTAATTGAACTATTAGAGTCCTATACTATTAAAT
CAATGATTTcgttatttttgtttgatacAACCCAATGATTTTAGACTTTA
TCTTAATTCATTTGAttactaaaatgaaatatttgtggATAAATTTGTTT
TGCACTAGAGAAGTTGTCCAAATGTTGGTTATTGTACAAGGAGTCctact
aatattttttgtgaaaaggAAGAAGAGTACGTGAAAGAAGAGAGAAACAC
AAGTGTccaatatagaaaataaaagtgataagGTTTCTTTTTATTCTAAG
ATTTCTAAGAACACATTAACTAATTTGATTTGGTTATTTAAACCAAATAT
TTGTGGAGGAAATTCTTTTACAAGAGAAGAGTTGTCCAAAACTTGGTTTT
TAGTACAAGGAGTCCTATTATTAAATgcacaataacaacaaaatttaatc
ATGACACGTATTCGACACCGTATAcctttattgatttttctaaTGGGTTC
TTAAGACAAGTGGCTGGTTATTAGTTATTTTCcatataaaggaaataaaa
taaatttgttatttgAACACTGTCCATTATTGTTTTGAAAAGTACATAAA
TTTCTCTTTTGGCGGCAAAGAATGTGCAAATTAACACACGTCAGAAACTC
TCTTCATATTTATCACttcataaatatttacaaaaacACGTGACATTCAT
TTATATCTACATTTCTATGTacataaaatattcattagTCTCCCTGTATG
GTGTATATTTAATGAGAAAACCTTCTGACCGTgagaaataacaaataaat
tttaattaattgatactATTCCAATTAGAGATGGCAATGAAGATGAACAG
GCATGGTTAGTAGccattttgaaatataatatcattattctTACCGGTAT
TTATATGTGTATCCATATGTGGGTTTTTCACATGTATTTATGAATACCTG
CAGATATAATGGATGCCTACAAGTTTTCTATGTTATCAATGAATTTCTAA
CTTTTTATCTCTATTATGTTTCACATAAGATGAaacttatttgttttttg
tgcCTTTTGATTGGACAtttgataaaaatgttaaatctattgaagttttc
tatttgtttatttgttctcattttcttaacaaaataaaagtttctttgca
agacatgtgtgtttcaccaccaaattataaggttaaaaaatgtaaacaaa
gtaaaagaaaaagatatatcaaAGTCTAATGATGGTTAGAGtagtttaca
tttttattttaattaaaggtaatatattaatcacATAAATAATGGGTATC
CACATATACGAGTACCACAATATCGGTATCCTCCCGTATATACTAtgact
atttttaaaaactcgtaTGTAAAATCTGTGGGTACTCATTTATGACTTAT
GTCCGAATGGATGTTACTCACAGATATGAGttttttgtcatctctaatTC
TAATAGGTCATATTTGGAAAATCAAAAGCACATacttagttatatatata
tttgatcagaaaaatacttttGTTCTTCGATAAGttgtaaatataaataa
ttttttttatccaaacaTTGGCAGGTGACGAAGGAGAAGCTCTTGGACAC
TATAACAGGGCATGTGGTGGGAGAGGCAGTATTGACTGCTACTTTCTAA back to topprotein sequence of rna-TanjilR_18626_La_Tanjil_v1.0 >rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=168bp
MAKNEFTLVSPATDNEGGEKLPRYCTQQGLGAKWDISPPLEWHNVPSKTK
SLALVVQDVDAVDPTGRKVPFTHWVVVNIPVTVKRLPEGLSGKVEEEGGE
YVGIAEGINDWKVNVWRGPKIDNYCDRFEFRLYAISEDMHFDNQVTKEKL
LDTITGHVVGEAVLTATF back to topmRNA from alignment at Chr_LG09-CM007369.1:7587977..7590125+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626; organism=Lupinus angustifolius; type=mRNA; length=2149bp; location=Sequence derived from: Chr_LG09-CM007369.1:7587977..7590125+ (Lupinus angustifolius
ATGGCAAAAAATGAATTCACGTTGGTTTCACCAGCAACAGACAATGAAGG
AGGTGAAAAACTACCAAGATACTGCACCCAGCAAGGCCTAGGCGCAAAGT
GGGACATATCTCCACCACTGGAATGGCACAACGTGCCATCCAAAACTAAG
AGCTTGGCCCTTGTGGTGCAGGACGTGGATGCTGTGGACCCAACTGGGCG
AAAGGTGCCATTCACACACTGGGTGGTGGTGAACATTCCGGTAACTGTTA
AGCGGCTACCGGAAGGACTTTCAGGTAAGGTGGAGGAAGAGGGTGGGGAG
TATGTTGGGATTGCAGAAGGGATTAACGATTGGAAGGTGAATGTGTGGCG
TGGTCCAAAGATTGATAACTATTGTGATAGGTTTGAGTTCAGACTCTATG
CTATCAGTGAAGACATGCACTTTGACAACCAGGTACTAGATAGcttaagc
cttgaatttaagttattcattttgaaaacatatttttgtaGGTTACCTAG
GCAAGTGTCGTTTCTTCTAATTGAACTATTAGAGTCCTATACTATTAAAT
CAATGATTTcgttatttttgtttgatacAACCCAATGATTTTAGACTTTA
TCTTAATTCATTTGAttactaaaatgaaatatttgtggATAAATTTGTTT
TGCACTAGAGAAGTTGTCCAAATGTTGGTTATTGTACAAGGAGTCctact
aatattttttgtgaaaaggAAGAAGAGTACGTGAAAGAAGAGAGAAACAC
AAGTGTccaatatagaaaataaaagtgataagGTTTCTTTTTATTCTAAG
ATTTCTAAGAACACATTAACTAATTTGATTTGGTTATTTAAACCAAATAT
TTGTGGAGGAAATTCTTTTACAAGAGAAGAGTTGTCCAAAACTTGGTTTT
TAGTACAAGGAGTCCTATTATTAAATgcacaataacaacaaaatttaatc
ATGACACGTATTCGACACCGTATAcctttattgatttttctaaTGGGTTC
TTAAGACAAGTGGCTGGTTATTAGTTATTTTCcatataaaggaaataaaa
taaatttgttatttgAACACTGTCCATTATTGTTTTGAAAAGTACATAAA
TTTCTCTTTTGGCGGCAAAGAATGTGCAAATTAACACACGTCAGAAACTC
TCTTCATATTTATCACttcataaatatttacaaaaacACGTGACATTCAT
TTATATCTACATTTCTATGTacataaaatattcattagTCTCCCTGTATG
GTGTATATTTAATGAGAAAACCTTCTGACCGTgagaaataacaaataaat
tttaattaattgatactATTCCAATTAGAGATGGCAATGAAGATGAACAG
GCATGGTTAGTAGccattttgaaatataatatcattattctTACCGGTAT
TTATATGTGTATCCATATGTGGGTTTTTCACATGTATTTATGAATACCTG
CAGATATAATGGATGCCTACAAGTTTTCTATGTTATCAATGAATTTCTAA
CTTTTTATCTCTATTATGTTTCACATAAGATGAaacttatttgttttttg
tgcCTTTTGATTGGACAtttgataaaaatgttaaatctattgaagttttc
tatttgtttatttgttctcattttcttaacaaaataaaagtttctttgca
agacatgtgtgtttcaccaccaaattataaggttaaaaaatgtaaacaaa
gtaaaagaaaaagatatatcaaAGTCTAATGATGGTTAGAGtagtttaca
tttttattttaattaaaggtaatatattaatcacATAAATAATGGGTATC
CACATATACGAGTACCACAATATCGGTATCCTCCCGTATATACTAtgact
atttttaaaaactcgtaTGTAAAATCTGTGGGTACTCATTTATGACTTAT
GTCCGAATGGATGTTACTCACAGATATGAGttttttgtcatctctaatTC
TAATAGGTCATATTTGGAAAATCAAAAGCACATacttagttatatatata
tttgatcagaaaaatacttttGTTCTTCGATAAGttgtaaatataaataa
ttttttttatccaaacaTTGGCAGGTGACGAAGGAGAAGCTCTTGGACAC
TATAACAGGGCATGTGGTGGGAGAGGCAGTATTGACTGCTACTTTCTAA back to topCoding sequence (CDS) from alignment at Chr_LG09-CM007369.1:7587977..7590125+ >rna-TanjilR_18626_La_Tanjil_v1.0 ID=rna-TanjilR_18626_La_Tanjil_v1.0; Name=rna-TanjilR_18626; organism=Lupinus angustifolius; type=CDS; length=507bp; location=Sequence derived from: Chr_LG09-CM007369.1:7587977..7590125+ (Lupinus angustifolius
ATGGCAAAAAATGAATTCACGTTGGTTTCACCAGCAACAGACAATGAAGG
AGGTGAAAAACTACCAAGATACTGCACCCAGCAAGGCCTAGGCGCAAAGT
GGGACATATCTCCACCACTGGAATGGCACAACGTGCCATCCAAAACTAAG
AGCTTGGCCCTTGTGGTGCAGGACGTGGATGCTGTGGACCCAACTGGGCG
AAAGGTGCCATTCACACACTGGGTGGTGGTGAACATTCCGGTAACTGTTA
AGCGGCTACCGGAAGGACTTTCAGGTAAGGTGGAGGAAGAGGGTGGGGAG
TATGTTGGGATTGCAGAAGGGATTAACGATTGGAAGGTGAATGTGTGGCG
TGGTCCAAAGATTGATAACTATTGTGATAGGTTTGAGTTCAGACTCTATG
CTATCAGTGAAGACATGCACTTTGACAACCAGGTGACGAAGGAGAAGCTC
TTGGACACTATAACAGGGCATGTGGTGGGAGAGGCAGTATTGACTGCTAC
TTTCTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
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