rna-TanjilR_03102

Transcript Overview
Namerna-TanjilR_03102
Unique Namerna-TanjilR_03102_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1846
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG07-CM007367.1supercontigChr_LG07-CM007367.1:3044219..3046064 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL115Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL246Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL587Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR607Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1223Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1246Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1255Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR1032Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1047Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1212Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1235Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0887Pisum sativum Cameor genome v1aPisum sativum
anpsR0910Pisum sativum Cameor genome v1aPisum sativum
anpsR0915Pisum sativum Cameor genome v1aPisum sativum
anpvR1202Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1224Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1041Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1056Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1144Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1145Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1192Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1001Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1037Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1039Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1035Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1095Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1089Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1001Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1026Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0992Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1006Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1141Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1148Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0949Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1130Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1169Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0999Cicer arietinum
ancarR1045Cicer arietinum
anccaR1011Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1030Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1191Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1197Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1118Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvstR1181Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1194Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1187Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1201Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR0999Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1016Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1242Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1261Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Cr_08211.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
XM_058878889.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014645277.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.06G149500.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vigst.06G139900.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
PvulFLAVERTChr05.1000859Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_014636379.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
LR48_mrnaVigan08g118500Vigna angularis Jingnong 6 genome v1.1Vigna angularis
PvulFLAVERTChr11.634Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vigan.07G085400.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Ca_04822.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Phvul.011G105100.2Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Cc_v2.0_23852.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vfaba.Hedin2.R1.1g057440.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Va08G055770.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vfaba.Tiffany.R1.1g039040.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Psat5g264520.1Pisum sativum Cameor genome v1aPisum sativum
Vum_07G00685.1Vigna umbellata FF25 genome v1.0Vigna umbellata
LR48_mrnaVigan05g159800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
jg5521.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vigun05g226200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun05g226200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va05G045930.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun11g115900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Psat07G0537200-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigst.07G064300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Psat05G0736600-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
jg44023.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_07134Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
evm.model.Chr11.1128.1.6211316dVigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigun11g115900.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.005G114500.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Ca_23207Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Cc_v2.0_09662.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vum_06G00979.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vfaba.Tiffany.R1.6g009160.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_07212Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_06517Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_03102gene-TanjilG_03102_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_03102rna-TanjilR_03102_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_03102_La_Tanjil_v1.0rna-TanjilR_03102_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044219..3044348rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044219..3044348Lupinus angustifoliusexon
rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044454..3044504rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044454..3044504Lupinus angustifoliusexon
rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044730..3044789rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044730..3044789Lupinus angustifoliusexon
rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3045858..3045929rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3045858..3045929Lupinus angustifoliusexon
rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3046027..3046064rna-TanjilR_03102_La_Tanjil_v1.0-exon-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3046027..3046064Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044219..3044348rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044219..3044348Lupinus angustifoliusCDS
rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044454..3044504rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044454..3044504Lupinus angustifoliusCDS
rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044730..3044789rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3044730..3044789Lupinus angustifoliusCDS
rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3045858..3045929rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3045858..3045929Lupinus angustifoliusCDS
rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3046027..3046064rna-TanjilR_03102_La_Tanjil_v1.0-CDS-Chr_LG07-CM007367.1_La_Tanjil_v1.0-1579734366:3046027..3046064Lupinus angustifoliusCDS


Homology
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1A_ARATH (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 2.527e-11
Identity = 57/117 (48.72%), Postives = 65/117 (55.56%), Query Frame = 1 
Query:    1 MATLDSDVAMVXXXXXXXXXXXXX--XXXXRFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITV 345
            MATLDSDV M+PAGE SSS   SS  KK KRFEIKKW+AVALWAW                                   DIVVDNCAICRNHIMDLC  +   +N++S+  +  TV
Sbjct:    1 MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAW-----------------------------------DIVVDNCAICRNHIMDLC--IECQANQASATSEECTV 80

HSP 2 Score: 56.6102 bits (135), Expect = 3.338e-10
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPLG 1713
            GVCNHAFHFHCISRWLKTRQVCPL 
Sbjct:   83 GVCNHAFHFHCISRWLKTRQVCPLD 107

HSP 3 Score: 31.187 bits (69), Expect = 3.338e-10
Identity = 12/12 (100.00%), Postives = 12/12 (100.00%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            DNSEWEFQKYGH
Sbjct:  107 DNSEWEFQKYGH 118
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1_SALSA (RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2)

HSP 1 Score: 56.6102 bits (135), Expect = 1.117e-9
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPLG 1713
            GVCNHAFHFHCISRWLKTRQVCPL 
Sbjct:   73 GVCNHAFHFHCISRWLKTRQVCPLD 97

HSP 2 Score: 29.261 bits (64), Expect = 1.117e-9
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            DN EWEFQKYGH
Sbjct:   97 DNREWEFQKYGH 108

HSP 3 Score: 59.3066 bits (142), Expect = 1.569e-9
Identity = 36/87 (41.38%), Postives = 43/87 (49.43%), Query Frame = 1 
Query:   85 RFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITV 345
            RFE+KKWNAVALWAW                                   DIVVDNCAICRNHIMDLC  +   +N++S+  +  TV
Sbjct:   21 RFEVKKWNAVALWAW-----------------------------------DIVVDNCAICRNHIMDLC--IECQANQASATSEECTV 70
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1_MOUSE (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.498e-9
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPL 1710
            GVCNHAFHFHCISRWLKTRQVCPL
Sbjct:   73 GVCNHAFHFHCISRWLKTRQVCPL 96

HSP 2 Score: 29.261 bits (64), Expect = 1.498e-9
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            DN EWEFQKYGH
Sbjct:   97 DNREWEFQKYGH 108

HSP 3 Score: 59.3066 bits (142), Expect = 1.509e-9
Identity = 36/87 (41.38%), Postives = 43/87 (49.43%), Query Frame = 1 
Query:   85 RFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITV 345
            RFE+KKWNAVALWAW                                   DIVVDNCAICRNHIMDLC  +   +N++S+  +  TV
Sbjct:   21 RFEVKKWNAVALWAW-----------------------------------DIVVDNCAICRNHIMDLC--IECQANQASATSEECTV 70
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1_HUMAN (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 1.498e-9
Identity = 24/24 (100.00%), Postives = 24/24 (100.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPL 1710
            GVCNHAFHFHCISRWLKTRQVCPL
Sbjct:   73 GVCNHAFHFHCISRWLKTRQVCPL 96

HSP 2 Score: 29.261 bits (64), Expect = 1.498e-9
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            DN EWEFQKYGH
Sbjct:   97 DNREWEFQKYGH 108

HSP 3 Score: 59.3066 bits (142), Expect = 1.509e-9
Identity = 36/87 (41.38%), Postives = 43/87 (49.43%), Query Frame = 1 
Query:   85 RFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITV 345
            RFE+KKWNAVALWAW                                   DIVVDNCAICRNHIMDLC  +   +N++S+  +  TV
Sbjct:   21 RFEVKKWNAVALWAW-----------------------------------DIVVDNCAICRNHIMDLC--IECQANQASATSEECTV 70
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1A_DROME (RING-box protein 1A OS=Drosophila melanogaster OX=7227 GN=Roc1a PE=1 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.981e-9
Identity = 36/88 (40.91%), Postives = 43/88 (48.86%), Query Frame = 1 
Query:   85 RFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITVT 348
            RFE+KKWNAVALWAW                                   DIVVDNCAICRNHIMDLC  +   +N++S+  +  TV 
Sbjct:   21 RFEVKKWNAVALWAW-----------------------------------DIVVDNCAICRNHIMDLC--IECQANQASATSEECTVA 71

HSP 2 Score: 56.6102 bits (135), Expect = 3.764e-9
Identity = 24/25 (96.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPLG 1713
            GVCNHAFHFHCISRWLKTRQVCPL 
Sbjct:   73 GVCNHAFHFHCISRWLKTRQVCPLD 97

HSP 3 Score: 27.7202 bits (60), Expect = 3.764e-9
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            DN EW+FQKYGH
Sbjct:   97 DNREWDFQKYGH 108
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1B_ARATH (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.830e-9
Identity = 25/30 (83.33%), Postives = 26/30 (86.67%), Query Frame = 1 
Query: 1627 TSYTGVCNHAFHFHCISRWLKTRQVCPLGI 1716
            T   GVCNHAFHFHCISRWLKTRQVCPL +
Sbjct:   76 TVAWGVCNHAFHFHCISRWLKTRQVCPLDV 105

HSP 2 Score: 26.9498 bits (58), Expect = 2.830e-9
Identity = 10/12 (83.33%), Postives = 10/12 (83.33%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            D  EWEFQKYGH
Sbjct:  104 DVCEWEFQKYGH 115

HSP 3 Score: 57.7658 bits (138), Expect = 6.476e-9
Identity = 47/116 (40.52%), Postives = 57/116 (49.14%), Query Frame = 1 
Query:    1 MATLDSDVAMVXXXXXXXXXXXXXXXXXRFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITVT 348
            MA+L+SDV M       S    SSK  KRFE+KKW+AVALWAW                                   DIVVDNCAICRNHIMDLC   +  +N++S+  +  TV 
Sbjct:    1 MASLNSDVIM-GESSSISVPSSSSKNSKRFELKKWSAVALWAW-----------------------------------DIVVDNCAICRNHIMDLCIECL--ANQASATSEECTVA 78
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1_CAEEL (RING-box protein 1 OS=Caenorhabditis elegans OX=6239 GN=rbx-1 PE=1 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 5.345e-9
Identity = 23/25 (92.00%), Postives = 23/25 (92.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPLG 1713
            G CNHAFHFHCISRWLKTRQVCPL 
Sbjct:   75 GNCNHAFHFHCISRWLKTRQVCPLD 99

HSP 2 Score: 29.261 bits (64), Expect = 5.345e-9
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            DN EWEFQKYGH
Sbjct:   99 DNREWEFQKYGH 110

HSP 3 Score: 53.5286 bits (127), Expect = 1.457e-7
Identity = 33/87 (37.93%), Postives = 40/87 (45.98%), Query Frame = 1 
Query:   85 RFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITV 345
            RFE+KKW+AVALWAW                                   DI VDNCAICRNHIMDLC  +   +N+++      TV
Sbjct:   23 RFEVKKWSAVALWAW-----------------------------------DIQVDNCAICRNHIMDLC--IECQANQAAGLKDECTV 72
[Close]
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1_SCHPO (RING-box protein pip1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pip1 PE=1 SV=2)

HSP 1 Score: 57.3806 bits (137), Expect = 6.328e-9
Identity = 37/87 (42.53%), Postives = 40/87 (45.98%), Query Frame = 1 
Query:   85 RFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITV 345
            RFEIKKWNAVALW W                                   DIVVDNCAICRNHIMDLC  +   +N  S+  Q  TV
Sbjct:   20 RFEIKKWNAVALWQW-----------------------------------DIVVDNCAICRNHIMDLC--IECQANTDSAAAQECTV 69

HSP 2 Score: 51.2174 bits (121), Expect = 8.947e-8
Identity = 21/25 (84.00%), Postives = 21/25 (84.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPLG 1713
            G CNHAFHFHCISRWL TR VCPL 
Sbjct:   72 GTCNHAFHFHCISRWLNTRNVCPLD 96

HSP 3 Score: 28.1054 bits (61), Expect = 8.947e-8
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2 
Query: 1808 DNSEWEFQKYGH 1843
            DN EWEFQ+YGH
Sbjct:   96 DNREWEFQRYGH 107
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BLAST of rna-TanjilR_03102 vs. DB:Swiss
Match: RBX1_DICDI (RING-box protein 1 OS=Dictyostelium discoideum OX=44689 GN=rbx1 PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 3.952e-8
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = 1 
Query: 1639 GVCNHAFHFHCISRWLKTRQVCPLG 1713
            G+CNHAFHFHCISRWLK+RQVCPL 
Sbjct:   69 GICNHAFHFHCISRWLKSRQVCPLD 93

HSP 2 Score: 53.5286 bits (127), Expect = 1.234e-7
Identity = 33/88 (37.50%), Postives = 42/88 (47.73%), Query Frame = 1 
Query:   85 RFEIKKWNAVALWAWGSCLSLSSNEPXXXXXXXXXXXXXXXXYFIFVVTADIVVDNCAICRNHIMDLCKHVIFNSNRSSSYYQSITVT 348
            +FE+K+WNAVALW W                                   DIVVDNCAICRNHIMDLC  +   +N++S+  +  TV 
Sbjct:   17 KFEVKRWNAVALWIW-----------------------------------DIVVDNCAICRNHIMDLC--IECQANQASNTSEECTVA 67
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_03102 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 9
Match NameE-valueIdentityDescription
RBX1A_ARATH2.527e-1148.72RING-box protein 1a OS=Arabidopsis thaliana OX=370... [more]
RBX1_SALSA1.117e-996.00RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 ... [more]
RBX1_MOUSE1.498e-9100.00E3 ubiquitin-protein ligase RBX1 OS=Mus musculus O... [more]
RBX1_HUMAN1.498e-9100.00E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens O... [more]
RBX1A_DROME1.981e-940.91RING-box protein 1A OS=Drosophila melanogaster OX=... [more]
RBX1B_ARATH2.830e-983.33RING-box protein 1b OS=Arabidopsis thaliana OX=370... [more]
RBX1_CAEEL5.345e-992.00RING-box protein 1 OS=Caenorhabditis elegans OX=62... [more]
RBX1_SCHPO6.328e-942.53RING-box protein pip1 OS=Schizosaccharomyces pombe... [more]
RBX1_DICDI3.952e-888.00RING-box protein 1 OS=Dictyostelium discoideum OX=... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 18..116
e-value: 6.4E-35
score: 121.2
IPR024766Zinc finger, RING-H2-typePFAMPF12678zf-rbx1coord: 48..106
e-value: 2.5E-25
score: 88.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..27
NoneNo IPR availableCDDcd16485mRING-H2-C3H2C2D_RBX1coord: 48..109
e-value: 2.70814E-44
score: 136.345
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 28..113
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 61..106
score: 9.303

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_03102_La_Tanjil_v1.0 ID=rna-TanjilR_03102_La_Tanjil_v1.0; Name=rna-TanjilR_03102; organism=Lupinus angustifolius; type=mRNA; length=1846bp
ATGGCGACTCTTGATTCCGACGTGGCTATGGTTCCCGCCGGCGAACCTTC
CAGCAGTGCTGGCCCTTCTTCCAAAAAACCCAAGCGCTTTGAGATCAAGA
AGTGGAACGCCGTCGCTCTCTGGGCTTGGGGTTCGTGTCTTTCTCTTTCC
TCCAATGAACCCTAATTTCTACGATTCTTGCGTGTTCGATTgaattttaa
ttctttattttattttatatttgttgtaACTGCAGACATTGTTGTGGATA
ACTGCGCTATCTGCCGTAACCATATCATGGATCTCTGTAAGCATGTTATT
TTCAATTCAAATCGTTCTTCAAGTTATTATCAATCAATCACTGTGACTAT
TCTATTTGAAGGTTTTGCTATTTGCACTCCATATTCTCTATTCGTACCCC
TCGTTAGCTACtcataattttgtttactaTGTAAAATTTTGATCAGGCAT
TTTATAATGCTAATAACTTCACCATCGATTTGTACTAATTTGCCTTTGTA
TTTTTGGTCAGGCATTGAGTGCCAAGCTAACCAGGCTAGTGCCACTAGCG
AGGAATGCACTGTGGCTTGGGGTATGTTCGAAATTCCACCTATCTTGTTT
GTTCTGTTTTTAAACTTTAATCTGCGATTTCATGTGAAATACCATAAATA
ACATCTTAGGATTGAAGCTAGGTCTAGTTTTGTGAATATTGTATAATTTA
AGTTTATAGTAAACTTATTTGCTTATTTCAACTTCAGGTGTGAGGAAGGT
GTCTAGTTAGTTTGGTTATTCATAAATGATAAACTTGCTCCTAAATTGAT
GCTACAGAGTGAGTGCATCATGAATATCCATCAAGTTAACCTTACATCCT
TCTTCCACTTATAGGCTTATATCACATAATAGCCAGTGGATATTGAAAAT
TGTagttttttataagcaaattatattaaatagagCACAAGGTTGCCTGC
CCAATACAAGTTAATACAGTACACTGAGTCAATACACCAGTTTGCAAAAG
ATACCGAAGATAAAGTTACAAATGAAGAAAACCAAATCCAAGATTTAGGT
TGAATCCTATTCATAAGATGAACATAACTCACTTCTTTCTCCATAAAGAT
ACCTTGGTTCCTCATTGTCCAGGTAGACAAACCACAACATCCTCCATATT
TTGACACAAAATCACAGCAACTGAATAAATGATCAATAGACTCCACATGA
AGATTGCATAGAAcacaatattgaaaattatAGTTAATGTCAGAACTATT
GTCTGAACACTTGGCTTAAGTATCCCAAggaaaaaaacaactttttatGG
CAACAAGCCCTTCCTGGTGCTGTTTGTGCTTACATGACTGTTATTGGGTG
GTGCCATGGTGGCTGCAATTAACTCTCCTTGAGCTCAAGTGAGACATAAG
TTGTGAACTTGTGATTCACTCGAAGCCTCACATGTAAAGCTGCAATATCT
TTGTGTTTCAgcatttctttgtttttatcttttgttATCCAAGATgcttc
tttaatttgcatactaTACTGTTAATGTAATTTTTGGTTCCACAAAGATT
TTGGTATAGCTAGATCCAATTAATTTGTGAAACCTTTATTTTGTTCCCTT
GGCATAAGATTACTCACTGATGTATTACATCATATACAGGGGTTTGTAAC
CATGCTTTTCATTTCCATTGCATTAGCCGATGGCTTAAGACCCGTCAAGT
TtgtcctctaggtatttggctcTAATTCCTCTTaccttttcttttctatt
gGTACCCCTAGGATTAAAAGGTGCTTCTTACTGACCTGATGTTTCTGTGC
TGGTACAGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAG
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protein sequence of rna-TanjilR_03102_La_Tanjil_v1.0

>rna-TanjilR_03102_La_Tanjil_v1.0 ID=rna-TanjilR_03102_La_Tanjil_v1.0; Name=rna-TanjilR_03102_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=116bp
MATLDSDVAMVPAGEPSSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNC
AICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ
VCPLDNSEWEFQKYGH
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mRNA from alignment at Chr_LG07-CM007367.1:3044219..3046064+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_03102_La_Tanjil_v1.0 ID=rna-TanjilR_03102_La_Tanjil_v1.0; Name=rna-TanjilR_03102; organism=Lupinus angustifolius; type=mRNA; length=1846bp; location=Sequence derived from: Chr_LG07-CM007367.1:3044219..3046064+ (Lupinus angustifolius
ATGGCGACTCTTGATTCCGACGTGGCTATGGTTCCCGCCGGCGAACCTTC
CAGCAGTGCTGGCCCTTCTTCCAAAAAACCCAAGCGCTTTGAGATCAAGA
AGTGGAACGCCGTCGCTCTCTGGGCTTGGGGTTCGTGTCTTTCTCTTTCC
TCCAATGAACCCTAATTTCTACGATTCTTGCGTGTTCGATTgaattttaa
ttctttattttattttatatttgttgtaACTGCAGACATTGTTGTGGATA
ACTGCGCTATCTGCCGTAACCATATCATGGATCTCTGTAAGCATGTTATT
TTCAATTCAAATCGTTCTTCAAGTTATTATCAATCAATCACTGTGACTAT
TCTATTTGAAGGTTTTGCTATTTGCACTCCATATTCTCTATTCGTACCCC
TCGTTAGCTACtcataattttgtttactaTGTAAAATTTTGATCAGGCAT
TTTATAATGCTAATAACTTCACCATCGATTTGTACTAATTTGCCTTTGTA
TTTTTGGTCAGGCATTGAGTGCCAAGCTAACCAGGCTAGTGCCACTAGCG
AGGAATGCACTGTGGCTTGGGGTATGTTCGAAATTCCACCTATCTTGTTT
GTTCTGTTTTTAAACTTTAATCTGCGATTTCATGTGAAATACCATAAATA
ACATCTTAGGATTGAAGCTAGGTCTAGTTTTGTGAATATTGTATAATTTA
AGTTTATAGTAAACTTATTTGCTTATTTCAACTTCAGGTGTGAGGAAGGT
GTCTAGTTAGTTTGGTTATTCATAAATGATAAACTTGCTCCTAAATTGAT
GCTACAGAGTGAGTGCATCATGAATATCCATCAAGTTAACCTTACATCCT
TCTTCCACTTATAGGCTTATATCACATAATAGCCAGTGGATATTGAAAAT
TGTagttttttataagcaaattatattaaatagagCACAAGGTTGCCTGC
CCAATACAAGTTAATACAGTACACTGAGTCAATACACCAGTTTGCAAAAG
ATACCGAAGATAAAGTTACAAATGAAGAAAACCAAATCCAAGATTTAGGT
TGAATCCTATTCATAAGATGAACATAACTCACTTCTTTCTCCATAAAGAT
ACCTTGGTTCCTCATTGTCCAGGTAGACAAACCACAACATCCTCCATATT
TTGACACAAAATCACAGCAACTGAATAAATGATCAATAGACTCCACATGA
AGATTGCATAGAAcacaatattgaaaattatAGTTAATGTCAGAACTATT
GTCTGAACACTTGGCTTAAGTATCCCAAggaaaaaaacaactttttatGG
CAACAAGCCCTTCCTGGTGCTGTTTGTGCTTACATGACTGTTATTGGGTG
GTGCCATGGTGGCTGCAATTAACTCTCCTTGAGCTCAAGTGAGACATAAG
TTGTGAACTTGTGATTCACTCGAAGCCTCACATGTAAAGCTGCAATATCT
TTGTGTTTCAgcatttctttgtttttatcttttgttATCCAAGATgcttc
tttaatttgcatactaTACTGTTAATGTAATTTTTGGTTCCACAAAGATT
TTGGTATAGCTAGATCCAATTAATTTGTGAAACCTTTATTTTGTTCCCTT
GGCATAAGATTACTCACTGATGTATTACATCATATACAGGGGTTTGTAAC
CATGCTTTTCATTTCCATTGCATTAGCCGATGGCTTAAGACCCGTCAAGT
TtgtcctctaggtatttggctcTAATTCCTCTTaccttttcttttctatt
gGTACCCCTAGGATTAAAAGGTGCTTCTTACTGACCTGATGTTTCTGTGC
TGGTACAGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAG
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Coding sequence (CDS) from alignment at Chr_LG07-CM007367.1:3044219..3046064+

>rna-TanjilR_03102_La_Tanjil_v1.0 ID=rna-TanjilR_03102_La_Tanjil_v1.0; Name=rna-TanjilR_03102; organism=Lupinus angustifolius; type=CDS; length=351bp; location=Sequence derived from: Chr_LG07-CM007367.1:3044219..3046064+ (Lupinus angustifolius
ATGGCGACTCTTGATTCCGACGTGGCTATGGTTCCCGCCGGCGAACCTTC
CAGCAGTGCTGGCCCTTCTTCCAAAAAACCCAAGCGCTTTGAGATCAAGA
AGTGGAACGCCGTCGCTCTCTGGGCTTGGGACATTGTTGTGGATAACTGC
GCTATCTGCCGTAACCATATCATGGATCTCTGCATTGAGTGCCAAGCTAA
CCAGGCTAGTGCCACTAGCGAGGAATGCACTGTGGCTTGGGGGGTTTGTA
ACCATGCTTTTCATTTCCATTGCATTAGCCGATGGCTTAAGACCCGTCAA
GTTtgtcctctagATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTA
G
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR024766Znf_RING_H2
IPR001841Znf_RING
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding