rna-TanjilR_13902

Transcript Overview


Name	rna-TanjilR_13902
Unique Name	rna-TanjilR_13902_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	711
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG09-CM007369.1	supercontig	Chr_LG09-CM007369.1:17815225..17815935 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL183	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL224	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL467	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaR1205	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anpsR1021	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR1028	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1346	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1205	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1209	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1330	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR1359	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1178	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvfhR1231	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1217	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvrvR1168	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1158	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ancanR1095	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1300	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1328	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1156		Cicer arietinum
anccaR1149	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1323	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1327	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1331	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1240	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR1249	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR1323	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1317	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1327	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1321	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR1325	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1331	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anpvfR1386	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR1168	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1448	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1463	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Phvul.001G065100.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vigan.03G214700.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Cc_v2.0_06453.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vigan.02G145000.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vfaba.Tiffany.R1.3g151480.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Va07G058410.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vigun09g158200.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vigun08g069700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Va04G053190.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Psat06G0114400-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
PvulFLAVERTChr09.1000815	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Psat5g083880.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vfaba.Hedin2.R1.3g189920.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigst.02G107500.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
XM_058927354.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-XM_014648394.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigun08g069700.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Psat6g040160.1	Pisum sativum Cameor genome v1a	Pisum sativum
rna-XM_004498308.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
LR48_mrnaVigan07g227400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Ca_13107	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
PvulFLAVERTChr01.421	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vum_02G01176.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
XM_058870956.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
LR48_mrnaVigan04g168800	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vigst.03G133600.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vum_03G01480.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_05054	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_13902	gene-TanjilG_13902_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_13902	rna-TanjilR_13902_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_13902_La_Tanjil_v1.0	rna-TanjilR_13902_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_13902_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935	rna-TanjilR_13902_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_13902_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935	rna-TanjilR_13902_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_13902 vs.

BLAST of rna-TanjilR_13902 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 203..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 47..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..183
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..236
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 184..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 124..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..67

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG09-CM007369.1:17815225..17815935+
coding sequence from alignment at Chr_LG09-CM007369.1:17815225..17815935+

mRNA sequence

>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902; organism=Lupinus angustifolius; type=mRNA; length=711bp
atgtttgaTCCAAGAAAAGACCAACCCTCAATTTCTTTTCCATTATTTGA
TGGAATGGGACATAGAATTCATGGTTATGAATCAAAGGTTGAAGATGAGC
CTGGTATTTGTTCACCTCCTTTATGGACTAGGAGTCCTCCAAAGAGCCCA
AATCAAAGAAGAAACTACTATAGAAGCTTATCCCCTAAATCAAAGACTCA
AGCCATTGAAAGAGGCCAAACGGAGCTTATGGAAATGGTTAGGACCATGC
CCGAGTCGAGTTACGAGCTGACTTTGAAAGATATTGTGGAGCAGCCAAAG
GTTGATGTCGAAGAAGAAATTAGGGTAAGAGAGAAAATTTGGAGGAACAA
AAATGTGCACAAGAGGGGAAGTGTTATTAGTAGAAATGTTGATAAAAAGG
GAAGTAGGAGTAATAAAATTGATAGTGGAGGGTTGTATCTGAAAATGGTG
TTTCCTACTTCACTGAGATCTAAGAAGAATAACAAAAAGAAGGATTCATC
AGCAAATAATAATAGTTCAAATGTTTCTCCTAGACCATCAGTTTCTGATA
GATCCACCAAGAACATTGATAAAGATTGGTGGAAGAAGCATCTTTCAGCA
TCTGGTGGAGAGAGTGATAGTGGTGTATCGAGTATCAATAGTGGAAGCAT
GAGAAGTTCTGGTAGCAGCAGTAGCAATAGCAGCAGCAAAAGTAACAGCA
GGTATGCTTAA

protein sequence of rna-TanjilR_13902_La_Tanjil_v1.0

>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=236bp
MFDPRKDQPSISFPLFDGMGHRIHGYESKVEDEPGICSPPLWTRSPPKSP
NQRRNYYRSLSPKSKTQAIERGQTELMEMVRTMPESSYELTLKDIVEQPK
VDVEEEIRVREKIWRNKNVHKRGSVISRNVDKKGSRSNKIDSGGLYLKMV
FPTSLRSKKNNKKKDSSANNNSSNVSPRPSVSDRSTKNIDKDWWKKHLSA
SGGESDSGVSSINSGSMRSSGSSSSNSSSKSNSRYA

mRNA from alignment at Chr_LG09-CM007369.1:17815225..17815935+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902; organism=Lupinus angustifolius; type=mRNA; length=711bp; location=Sequence derived from: Chr_LG09-CM007369.1:17815225..17815935+ (Lupinus angustifolius
atgtttgaTCCAAGAAAAGACCAACCCTCAATTTCTTTTCCATTATTTGA
TGGAATGGGACATAGAATTCATGGTTATGAATCAAAGGTTGAAGATGAGC
CTGGTATTTGTTCACCTCCTTTATGGACTAGGAGTCCTCCAAAGAGCCCA
AATCAAAGAAGAAACTACTATAGAAGCTTATCCCCTAAATCAAAGACTCA
AGCCATTGAAAGAGGCCAAACGGAGCTTATGGAAATGGTTAGGACCATGC
CCGAGTCGAGTTACGAGCTGACTTTGAAAGATATTGTGGAGCAGCCAAAG
GTTGATGTCGAAGAAGAAATTAGGGTAAGAGAGAAAATTTGGAGGAACAA
AAATGTGCACAAGAGGGGAAGTGTTATTAGTAGAAATGTTGATAAAAAGG
GAAGTAGGAGTAATAAAATTGATAGTGGAGGGTTGTATCTGAAAATGGTG
TTTCCTACTTCACTGAGATCTAAGAAGAATAACAAAAAGAAGGATTCATC
AGCAAATAATAATAGTTCAAATGTTTCTCCTAGACCATCAGTTTCTGATA
GATCCACCAAGAACATTGATAAAGATTGGTGGAAGAAGCATCTTTCAGCA
TCTGGTGGAGAGAGTGATAGTGGTGTATCGAGTATCAATAGTGGAAGCAT
GAGAAGTTCTGGTAGCAGCAGTAGCAATAGCAGCAGCAAAAGTAACAGCA
GGTATGCTTAA

Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:17815225..17815935+

>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902; organism=Lupinus angustifolius; type=CDS; length=711bp; location=Sequence derived from: Chr_LG09-CM007369.1:17815225..17815935+ (Lupinus angustifolius
atgtttgaTCCAAGAAAAGACCAACCCTCAATTTCTTTTCCATTATTTGA
TGGAATGGGACATAGAATTCATGGTTATGAATCAAAGGTTGAAGATGAGC
CTGGTATTTGTTCACCTCCTTTATGGACTAGGAGTCCTCCAAAGAGCCCA
AATCAAAGAAGAAACTACTATAGAAGCTTATCCCCTAAATCAAAGACTCA
AGCCATTGAAAGAGGCCAAACGGAGCTTATGGAAATGGTTAGGACCATGC
CCGAGTCGAGTTACGAGCTGACTTTGAAAGATATTGTGGAGCAGCCAAAG
GTTGATGTCGAAGAAGAAATTAGGGTAAGAGAGAAAATTTGGAGGAACAA
AAATGTGCACAAGAGGGGAAGTGTTATTAGTAGAAATGTTGATAAAAAGG
GAAGTAGGAGTAATAAAATTGATAGTGGAGGGTTGTATCTGAAAATGGTG
TTTCCTACTTCACTGAGATCTAAGAAGAATAACAAAAAGAAGGATTCATC
AGCAAATAATAATAGTTCAAATGTTTCTCCTAGACCATCAGTTTCTGATA
GATCCACCAAGAACATTGATAAAGATTGGTGGAAGAAGCATCTTTCAGCA
TCTGGTGGAGAGAGTGATAGTGGTGTATCGAGTATCAATAGTGGAAGCAT
GAGAAGTTCTGGTAGCAGCAGTAGCAATAGCAGCAGCAAAAGTAACAGCA
GGTATGCTTAA

Search form

rna-TanjilR_13902