rna-TanjilR_13902

Transcript Overview
Namerna-TanjilR_13902
Unique Namerna-TanjilR_13902_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length711
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG09-CM007369.1supercontigChr_LG09-CM007369.1:17815225..17815935 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL183Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL224Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL467Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaR1205Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anpsR1021Pisum sativum Cameor genome v1aPisum sativum
anpsR1028Pisum sativum Cameor genome v1aPisum sativum
anpvR1346Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1205Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1209Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1330Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1359Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1178Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1231Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1217Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1168Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1158Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ancanR1095Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1300Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1328Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1156Cicer arietinum
anccaR1149Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1323Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1327Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1331Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1240Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1249Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR1323Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1317Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1327Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1321Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR1325Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1331Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anpvfR1386Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR1168Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1448Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1463Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Phvul.001G065100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vigan.03G214700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Cc_v2.0_06453.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigan.02G145000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.3g151480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va07G058410.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun09g158200.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun08g069700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Va04G053190.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat06G0114400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
PvulFLAVERTChr09.1000815Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Psat5g083880.1Pisum sativum Cameor genome v1aPisum sativum
Vfaba.Hedin2.R1.3g189920.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigst.02G107500.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
XM_058927354.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
rna-XM_014648394.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun08g069700.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat6g040160.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_004498308.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
LR48_mrnaVigan07g227400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Ca_13107Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
PvulFLAVERTChr01.421Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vum_02G01176.1Vigna umbellata FF25 genome v1.0Vigna umbellata
XM_058870956.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
LR48_mrnaVigan04g168800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vigst.03G133600.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vum_03G01480.1Vigna umbellata FF25 genome v1.0Vigna umbellata

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_05054Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_13902gene-TanjilG_13902_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_13902rna-TanjilR_13902_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_13902_La_Tanjil_v1.0rna-TanjilR_13902_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_13902_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935rna-TanjilR_13902_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_13902_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935rna-TanjilR_13902_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:17815225..17815935Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13902 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 203..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 47..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 166..183
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 118..236
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 184..199
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 124..138
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..67

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902; organism=Lupinus angustifolius; type=mRNA; length=711bp
atgtttgaTCCAAGAAAAGACCAACCCTCAATTTCTTTTCCATTATTTGA
TGGAATGGGACATAGAATTCATGGTTATGAATCAAAGGTTGAAGATGAGC
CTGGTATTTGTTCACCTCCTTTATGGACTAGGAGTCCTCCAAAGAGCCCA
AATCAAAGAAGAAACTACTATAGAAGCTTATCCCCTAAATCAAAGACTCA
AGCCATTGAAAGAGGCCAAACGGAGCTTATGGAAATGGTTAGGACCATGC
CCGAGTCGAGTTACGAGCTGACTTTGAAAGATATTGTGGAGCAGCCAAAG
GTTGATGTCGAAGAAGAAATTAGGGTAAGAGAGAAAATTTGGAGGAACAA
AAATGTGCACAAGAGGGGAAGTGTTATTAGTAGAAATGTTGATAAAAAGG
GAAGTAGGAGTAATAAAATTGATAGTGGAGGGTTGTATCTGAAAATGGTG
TTTCCTACTTCACTGAGATCTAAGAAGAATAACAAAAAGAAGGATTCATC
AGCAAATAATAATAGTTCAAATGTTTCTCCTAGACCATCAGTTTCTGATA
GATCCACCAAGAACATTGATAAAGATTGGTGGAAGAAGCATCTTTCAGCA
TCTGGTGGAGAGAGTGATAGTGGTGTATCGAGTATCAATAGTGGAAGCAT
GAGAAGTTCTGGTAGCAGCAGTAGCAATAGCAGCAGCAAAAGTAACAGCA
GGTATGCTTAA
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protein sequence of rna-TanjilR_13902_La_Tanjil_v1.0

>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=236bp
MFDPRKDQPSISFPLFDGMGHRIHGYESKVEDEPGICSPPLWTRSPPKSP
NQRRNYYRSLSPKSKTQAIERGQTELMEMVRTMPESSYELTLKDIVEQPK
VDVEEEIRVREKIWRNKNVHKRGSVISRNVDKKGSRSNKIDSGGLYLKMV
FPTSLRSKKNNKKKDSSANNNSSNVSPRPSVSDRSTKNIDKDWWKKHLSA
SGGESDSGVSSINSGSMRSSGSSSSNSSSKSNSRYA
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mRNA from alignment at Chr_LG09-CM007369.1:17815225..17815935+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902; organism=Lupinus angustifolius; type=mRNA; length=711bp; location=Sequence derived from: Chr_LG09-CM007369.1:17815225..17815935+ (Lupinus angustifolius
atgtttgaTCCAAGAAAAGACCAACCCTCAATTTCTTTTCCATTATTTGA
TGGAATGGGACATAGAATTCATGGTTATGAATCAAAGGTTGAAGATGAGC
CTGGTATTTGTTCACCTCCTTTATGGACTAGGAGTCCTCCAAAGAGCCCA
AATCAAAGAAGAAACTACTATAGAAGCTTATCCCCTAAATCAAAGACTCA
AGCCATTGAAAGAGGCCAAACGGAGCTTATGGAAATGGTTAGGACCATGC
CCGAGTCGAGTTACGAGCTGACTTTGAAAGATATTGTGGAGCAGCCAAAG
GTTGATGTCGAAGAAGAAATTAGGGTAAGAGAGAAAATTTGGAGGAACAA
AAATGTGCACAAGAGGGGAAGTGTTATTAGTAGAAATGTTGATAAAAAGG
GAAGTAGGAGTAATAAAATTGATAGTGGAGGGTTGTATCTGAAAATGGTG
TTTCCTACTTCACTGAGATCTAAGAAGAATAACAAAAAGAAGGATTCATC
AGCAAATAATAATAGTTCAAATGTTTCTCCTAGACCATCAGTTTCTGATA
GATCCACCAAGAACATTGATAAAGATTGGTGGAAGAAGCATCTTTCAGCA
TCTGGTGGAGAGAGTGATAGTGGTGTATCGAGTATCAATAGTGGAAGCAT
GAGAAGTTCTGGTAGCAGCAGTAGCAATAGCAGCAGCAAAAGTAACAGCA
GGTATGCTTAA
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Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:17815225..17815935+

>rna-TanjilR_13902_La_Tanjil_v1.0 ID=rna-TanjilR_13902_La_Tanjil_v1.0; Name=rna-TanjilR_13902; organism=Lupinus angustifolius; type=CDS; length=711bp; location=Sequence derived from: Chr_LG09-CM007369.1:17815225..17815935+ (Lupinus angustifolius
atgtttgaTCCAAGAAAAGACCAACCCTCAATTTCTTTTCCATTATTTGA
TGGAATGGGACATAGAATTCATGGTTATGAATCAAAGGTTGAAGATGAGC
CTGGTATTTGTTCACCTCCTTTATGGACTAGGAGTCCTCCAAAGAGCCCA
AATCAAAGAAGAAACTACTATAGAAGCTTATCCCCTAAATCAAAGACTCA
AGCCATTGAAAGAGGCCAAACGGAGCTTATGGAAATGGTTAGGACCATGC
CCGAGTCGAGTTACGAGCTGACTTTGAAAGATATTGTGGAGCAGCCAAAG
GTTGATGTCGAAGAAGAAATTAGGGTAAGAGAGAAAATTTGGAGGAACAA
AAATGTGCACAAGAGGGGAAGTGTTATTAGTAGAAATGTTGATAAAAAGG
GAAGTAGGAGTAATAAAATTGATAGTGGAGGGTTGTATCTGAAAATGGTG
TTTCCTACTTCACTGAGATCTAAGAAGAATAACAAAAAGAAGGATTCATC
AGCAAATAATAATAGTTCAAATGTTTCTCCTAGACCATCAGTTTCTGATA
GATCCACCAAGAACATTGATAAAGATTGGTGGAAGAAGCATCTTTCAGCA
TCTGGTGGAGAGAGTGATAGTGGTGTATCGAGTATCAATAGTGGAAGCAT
GAGAAGTTCTGGTAGCAGCAGTAGCAATAGCAGCAGCAAAAGTAACAGCA
GGTATGCTTAA
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