rna-TanjilR_13877
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL4_ORYSI (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_031067 PE=3 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 5.910e-56 Identity = 99/171 (57.89%), Postives = 127/171 (74.27%), Query Frame = 2 Query: 896 DEDNYNC----LIWKVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATSAS-GFPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQGDE-NTEKLPVGL-VSPEGDLKWYLDIGAASKL 1387
++ NY + KVPIP +Y I+DAL A+GAAD YET L++LVK+GVIA S S GFP+FD+MLLG+GPDGH+ASLFP HP+V E+KKWVT+IKDSPKPP +RIT TFPVINSS+ +AMVVTGAGK+ AV L + +++ LPV + V +G+ W+ D A S L
Sbjct: 151 EDSNYKLALDGFLSKVPIPTGQVYAINDALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENKKWVTYIKDSPKPPPERITFTFPVINSSAYVAMVVTGAGKAGAVQKALSDKQTSSDLLPVEMAVLQDGEFTWFTDKPAVSML 321 HSP 2 Score: 87.0409 bits (214), Expect = 1.324e-17 Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIV 726
L RKL E P+ +S+DWSKWHVFWVDERVVPKDH +SNYKLA DGFLSKV +
Sbjct: 115 LIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPI 168
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL4_ORYSJ (Probable 6-phosphogluconolactonase 4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0529100 PE=2 SV=2) HSP 1 Score: 191.815 bits (486), Expect = 6.432e-56 Identity = 99/171 (57.89%), Postives = 127/171 (74.27%), Query Frame = 2 Query: 896 DEDNYNC----LIWKVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATSAS-GFPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQGDE-NTEKLPVGL-VSPEGDLKWYLDIGAASKL 1387
++ NY + KVPIP +Y I+DAL A+GAAD YET L++LVK+GVIA S S GFP+FD+MLLG+GPDGH+ASLFP HP+V E+KKWVT+IKDSPKPP +RIT TFPVINSS+ +AMVVTGAGK+ AV L + +++ LPV + V +G+ W+ D A S L
Sbjct: 151 EDSNYKLALDGFLSKVPIPTGQVYAINDALSAEGAADDYETCLKQLVKNGVIAMSQSTGFPRFDVMLLGMGPDGHIASLFPGHPLVNENKKWVTYIKDSPKPPPERITFTFPVINSSAYVAMVVTGAGKAGAVQKALSDKQTSSDLLPVEMAVLQDGEFTWFTDKPAVSML 321 HSP 2 Score: 87.0409 bits (214), Expect = 1.349e-17 Identity = 39/54 (72.22%), Postives = 44/54 (81.48%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIV 726
L RKL E P+ +S+DWSKWHVFWVDERVVPKDH +SNYKLA DGFLSKV +
Sbjct: 115 LIKNIRKLAEPPYLDSVDWSKWHVFWVDERVVPKDHEDSNYKLALDGFLSKVPI 168
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL3_ORYSJ (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os08g0547100 PE=2 SV=1) HSP 1 Score: 187.963 bits (476), Expect = 2.455e-54 Identity = 95/160 (59.38%), Postives = 121/160 (75.62%), Query Frame = 2 Query: 917 LIWKVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATS-ASGFPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQGDE-NTEKLPVGLVS-PEGDLKWYLDIGAASKL 1387
L+ KVPIP IY I+D L A+GAAD YET L++LV GV+A S +GFPK DLMLLG+GPDGHVASLFP HP+V E+ KWV++IKDSPKPP +RIT TFP++NSS++IA+VVTGAGK+ AV+ + +++ LPV +VS EG L W+ D A S L
Sbjct: 165 LLSKVPIPASQIYAINDTLSAEGAADEYETCLKQLVNDGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVVNENLKWVSYIKDSPKPPPERITFTFPLVNSSAHIALVVTGAGKAGAVHKAFSDKQSSSDLLPVEMVSQQEGVLTWFTDKPAVSML 324 HSP 2 Score: 87.8113 bits (216), Expect = 8.424e-18 Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIVLFSSHCAV 750
L RKL ESP+ E+++WSKWHVFWVDERVVPKDH +SNYKLA DG LSKV + S A+
Sbjct: 118 LIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAI 179
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL3_ORYSI (Probable 6-phosphogluconolactonase 3, chloroplastic OS=Oryza sativa subsp. indica OX=39946 GN=OsI_30141 PE=3 SV=2) HSP 1 Score: 187.963 bits (476), Expect = 2.455e-54 Identity = 95/160 (59.38%), Postives = 121/160 (75.62%), Query Frame = 2 Query: 917 LIWKVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATS-ASGFPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQGDE-NTEKLPVGLVS-PEGDLKWYLDIGAASKL 1387
L+ KVPIP IY I+D L A+GAAD YET L++LV GV+A S +GFPK DLMLLG+GPDGHVASLFP HP+V E+ KWV++IKDSPKPP +RIT TFP++NSS++IA+VVTGAGK+ AV+ + +++ LPV +VS EG L W+ D A S L
Sbjct: 165 LLSKVPIPASQIYAINDTLSAEGAADEYETCLKQLVNDGVVAISEVTGFPKLDLMLLGMGPDGHVASLFPGHPVVNENLKWVSYIKDSPKPPPERITFTFPLVNSSAHIALVVTGAGKAGAVHKAFSDKQSSSDLLPVEMVSQQEGVLTWFTDKPAVSML 324 HSP 2 Score: 87.8113 bits (216), Expect = 8.424e-18 Identity = 40/62 (64.52%), Postives = 47/62 (75.81%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIVLFSSHCAV 750
L RKL ESP+ E+++WSKWHVFWVDERVVPKDH +SNYKLA DG LSKV + S A+
Sbjct: 118 LIKALRKLTESPYLEAVEWSKWHVFWVDERVVPKDHADSNYKLAMDGLLSKVPIPASQIYAI 179
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL3_ARATH (6-phosphogluconolactonase 3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PGL3 PE=1 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 7.708e-53 Identity = 93/161 (57.76%), Postives = 117/161 (72.67%), Query Frame = 2 Query: 908 YNCLIWKVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATSAS-GFPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQGDENTEKLPVGLVSPEGDLKWYLDIGAASKL 1387
Y+ + KVPIP N+Y I++AL A+ AAD YET L+ LV + ++ S S GFPKFDLMLLG+GPDGHVASLFP H + E KKWV I DSPKPPS+RIT TFPVINSS+++A+VV G+GK+ AV + L+ N P G VS E +L W+LD A+SKL
Sbjct: 167 YDSFLSKVPIPPGNVYAINEALSAEAAADDYETCLKHLVNTNILRVSESTGFPKFDLMLLGMGPDGHVASLFPGHGLCNESKKWVVSISDSPKPPSERITFTFPVINSSAHVALVVCGSGKAEAVEAALKKTGNVP--PAGSVSAEDELVWFLDKPASSKL 325 HSP 2 Score: 84.7297 bits (208), Expect = 9.097e-17 Identity = 38/54 (70.37%), Postives = 45/54 (83.33%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIV 726
L RKLVESP+ +SIDW++WH FWVDERVVPK+H +SNYKLAYD FLSKV +
Sbjct: 123 LIKSLRKLVESPYVDSIDWARWHFFWVDERVVPKNHDDSNYKLAYDSFLSKVPI 176
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL2_ARATH (Probable 6-phosphogluconolactonase 2 OS=Arabidopsis thaliana OX=3702 GN=PGL2 PE=2 SV=2) HSP 1 Score: 151.754 bits (382), Expect = 1.739e-41 Identity = 81/165 (49.09%), Postives = 109/165 (66.06%), Query Frame = 2 Query: 908 YNCLIWKVPIPQVNIYGIDDALEADG----AADVYETTLRRLVKSGVIAT-SASGFPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQGDENTEKLPVGLVSPEGDLKWYLDIGAASKL 1387
Y+ + KVP+P NIY ID+ L A+G AA+ YE L++ V +I T +SGFP+FDL LLG+GPDGH+ASLFP H + E KWVT I DSPKPPS RITLT PVIN +S M V ++++V + L +T+ LP G ++ + ++ W+LD AASKL
Sbjct: 90 YDGFLSKVPVPAENIYAIDNGLGAEGNAELAAERYEECLKQKVNQNIIRTYKSSGFPQFDLQLLGMGPDGHMASLFPGHAQINEKVKWVTSITDSPKPPSKRITLTLPVINCASYNVMAVCDKEQADSVAAALN---HTKDLPAGRLTADVEVVWFLDQAAASKL 251 HSP 2 Score: 80.1073 bits (196), Expect = 1.308e-15 Identity = 39/59 (66.10%), Postives = 47/59 (79.66%), Query Frame = 1 Query: 550 DFIMFLWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIV 726
D I +LW KL+E+P+ +SI+WSKWH+FWVDERV DH +SNYKLAYDGFLSKV V
Sbjct: 45 DLIAWLW----KLLEAPYIDSIEWSKWHIFWVDERVCAWDHADSNYKLAYDGFLSKVPV 99
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL5_ARATH (Probable 6-phosphogluconolactonase 5 OS=Arabidopsis thaliana OX=3702 GN=PGL5 PE=2 SV=2) HSP 1 Score: 148.288 bits (373), Expect = 2.542e-40 Identity = 78/159 (49.06%), Postives = 100/159 (62.89%), Query Frame = 2 Query: 926 KVPIPQVNIYGIDDALEADGAAD----VYETTLRRLVKSGVIATSA-SGFPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQGDENTEKLPVGLVSPEGDLKWYLDIGAASKL 1387
KVPIP NIY ID L ADG A+ +YE L+ LVK +I S +G+P+FDL LLG+GPDGH+ASLFP HP + E +KWVT+I DSPKPP RIT T PVINS+ M + + +V ++ N LP +S + + WYLD AAS+L
Sbjct: 96 KVPIPDKNIYAIDKHLAADGNAEHCATLYEECLKNLVKEKIIPISKKTGYPEFDLQLLGMGPDGHMASLFPNHPQINEKQKWVTYITDSPKPPPKRITFTLPVINSTLYNLMAICDKAPAKSVAEIMK--HNNLSLPSAHLSAQVENVWYLDQAAASEL 252 HSP 2 Score: 65.0846 bits (157), Expect = 1.332e-10 Identity = 30/48 (62.50%), Postives = 38/48 (79.17%), Query Frame = 1 Query: 583 KLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIV 726
KLV+ P+ +SI+W KWHVFWVDERV + +SNYKLA +GFLSKV +
Sbjct: 52 KLVQPPYIDSIEWPKWHVFWVDERVCAWEDPDSNYKLAMEGFLSKVPI 99
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL2_ORYSJ (Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0604000 PE=2 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 9.039e-39 Identity = 84/176 (47.73%), Postives = 106/176 (60.23%), Query Frame = 2 Query: 899 EDNYNC----LIWKVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATSASG-FPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQ----GDENTEKLPVGLVSP-EGDLKWYLDIGAASKLFKE 1396
E NY + KVPI ++Y I+D + AA YE +R+LVK I S S PKFDL+LL +G DGHVASLFP HP ++ W+T+I DSP+PP +RIT T PVINS+SNIA+V TG KS AV+ + G E LP +V P +G L W+LD AAS L E
Sbjct: 94 ESNYRITKEGFLSKVPILNGHVYSINDNATVEDAATDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYITDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQPTDGKLVWFLDKSAASSLDAE 269 HSP 2 Score: 70.0922 bits (170), Expect = 3.918e-12 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIVL 729
L S KL E+P+ +++DWSKW++FW DER V K+H ESNY++ +GFLSKV +L
Sbjct: 57 LVSFLGKLCEAPYNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPIL 111
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL2_ORYSI (Probable 6-phosphogluconolactonase 2 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_025867 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 9.039e-39 Identity = 84/176 (47.73%), Postives = 106/176 (60.23%), Query Frame = 2 Query: 899 EDNYNC----LIWKVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATSASG-FPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQ----GDENTEKLPVGLVSP-EGDLKWYLDIGAASKLFKE 1396
E NY + KVPI ++Y I+D + AA YE +R+LVK I S S PKFDL+LL +G DGHVASLFP HP ++ W+T+I DSP+PP +RIT T PVINS+SNIA+V TG KS AV+ + G E LP +V P +G L W+LD AAS L E
Sbjct: 94 ESNYRITKEGFLSKVPILNGHVYSINDNATVEDAATDYEFVIRQLVKVRTIGVSESNDCPKFDLILLSMGSDGHVASLFPNHPSLELKDDWITYITDSPQPPPERITFTLPVINSASNIAIVTTGDDKSEAVHLAISDNADGPEAPSSLPARMVQPTDGKLVWFLDKSAASSLDAE 269 HSP 2 Score: 70.0922 bits (170), Expect = 3.918e-12 Identity = 30/55 (54.55%), Postives = 42/55 (76.36%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIVL 729
L S KL E+P+ +++DWSKW++FW DER V K+H ESNY++ +GFLSKV +L
Sbjct: 57 LVSFLGKLCEAPYNKTLDWSKWYIFWSDERAVAKNHAESNYRITKEGFLSKVPIL 111
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Match: 6PGL1_ORYSJ (Probable 6-phosphogluconolactonase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0416500 PE=2 SV=1) HSP 1 Score: 140.584 bits (353), Expect = 6.926e-37 Identity = 79/159 (49.69%), Postives = 102/159 (64.15%), Query Frame = 2 Query: 926 KVPIPQVNIYGIDDALEADGAADVYETTLRRLVKSGVIATSASG-FPKFDLMLLGIGPDGHVASLFPEHPIVKEDKKWVTFIKDSPKPPSDRITLTFPVINSSSNIAMVVTGAGKSNAVYSTLQ-GDE--NTEKLPVGLVSP-EGDLKWYLDIGAASKL 1387
KVPI ++Y I+D + + AA YE +R+LVK + S S PKFDL+LL IG DGHVASLFP HP ++ WVT+I DSP PP +RIT T PVINS+SNIA+V TG K+ AVY + G E + +P +V P +G L W+LD +AS L
Sbjct: 124 KVPILNGHVYSINDNVTVEDAATDYEFVIRQLVKIRTVGVSESNDCPKFDLILLSIGSDGHVASLFPNHPALELKDDWVTYITDSPVPPPERITFTLPVINSASNIAVVATGEDKAKAVYFAISDGTEGPDAPSIPARMVQPTDGKLVWFLDKASASFL 282 HSP 2 Score: 65.0846 bits (157), Expect = 2.337e-10 Identity = 29/55 (52.73%), Postives = 41/55 (74.55%), Query Frame = 1 Query: 565 LWSKFRKLVESPHAESIDWSKWHVFWVDERVVPKDHLESNYKLAYDGFLSKVIVL 729
L S RKL E+P+ +++DWSKW++FW DER V K+H++S YK + FLSKV +L
Sbjct: 74 LISFMRKLCEAPYNKTLDWSKWYIFWADERAVAKNHVDSYYKSTKEDFLSKVPIL 128 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_13877 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_13877_La_Tanjil_v1.0 ID=rna-TanjilR_13877_La_Tanjil_v1.0; Name=rna-TanjilR_13877; organism=Lupinus angustifolius; type=mRNA; length=1399bpback to top protein sequence of rna-TanjilR_13877_La_Tanjil_v1.0 >rna-TanjilR_13877_La_Tanjil_v1.0 ID=rna-TanjilR_13877_La_Tanjil_v1.0; Name=rna-TanjilR_13877_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=319bpback to top mRNA from alignment at Chr_LG09-CM007369.1:18023199..18024597- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_13877_La_Tanjil_v1.0 ID=rna-TanjilR_13877_La_Tanjil_v1.0; Name=rna-TanjilR_13877; organism=Lupinus angustifolius; type=mRNA; length=1399bp; location=Sequence derived from: Chr_LG09-CM007369.1:18023199..18024597- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18023199..18024597- >rna-TanjilR_13877_La_Tanjil_v1.0 ID=rna-TanjilR_13877_La_Tanjil_v1.0; Name=rna-TanjilR_13877; organism=Lupinus angustifolius; type=CDS; length=960bp; location=Sequence derived from: Chr_LG09-CM007369.1:18023199..18024597- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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