rna-TanjilR_24179

Transcript Overview


Name	rna-TanjilR_24179
Unique Name	rna-TanjilR_24179_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	1709
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG09-CM007369.1	supercontig	Chr_LG09-CM007369.1:18260430..18262138 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL183	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL284	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL310	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL467	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR1378	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR1406	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
anccR1546	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancaR1176	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR1212	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancrR1389	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR1421	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0994	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR1019	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR1404	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR1419	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR1204	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR1209	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR1330	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR1133	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR1164	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anvfhR1199	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1185	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR1216	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR1202	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvrvR1153	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR1162	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR1158	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR1163	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR1322	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR1360	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR1064	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR1102	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR1300	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR1323	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR1131		Cicer arietinum
ancarR1164		Cicer arietinum
anccaR1149	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR1162	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR1323	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR1327	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR1236	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR1323	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1317	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR1327	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR1321	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR1165	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR1172	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR1448	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR1463	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Cr_11432.1	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
Vfaba.Hedin2.R1.2g081800.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Ca_23830	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vigun09g169900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Vigun09g169900.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Cc_v2.0_06555.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
rna-XM_014643285.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Vigan.02G128800.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Phvul.009G121700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
LR48_mrnaVigan04g182400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Vum_02G01051.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
rna-XM_004500533.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Vfaba.Tiffany.R1.2g066920.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Va04G056310.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Psat05G0390900-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Vigst.02G098100.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
jg52636.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
PvulFLAVERTChr09.830	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
evm.model.Chr09.1987	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Psat5g133800.1	Pisum sativum Cameor genome v1a	Pisum sativum

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_09223	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_24179	gene-TanjilG_24179_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_24179	rna-TanjilR_24179_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_24179_La_Tanjil_v1.0	rna-TanjilR_24179_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138	rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138	Lupinus angustifolius	CDS
rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043	rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043	Lupinus angustifolius	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138	rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138	Lupinus angustifolius	exon
rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043	rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043	Lupinus angustifolius	exon

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_24179 vs.

BLAST of rna-TanjilR_24179 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

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x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.90.228.10		coord: 192..405 e-value: 4.0E-21 score: 77.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..34
None	No IPR available	SUPERFAMILY	56399	ADP-ribosylation	coord: 203..404
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 178..201
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 176..201 score: 9.099

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG09-CM007369.1:18260430..18262138-
coding sequence from alignment at Chr_LG09-CM007369.1:18260430..18262138-

mRNA sequence

>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179; organism=Lupinus angustifolius; type=mRNA; length=1709bp
ATGAGAAAACATAGAACCCATAGAAGAGTCACTAACACCAATGATGTAAA
CCAAAACCAAAGCCAAAAGCCACAGAAAAGAGAAAAACAAAAACAAGCGT
CATGGGCTATGGTAAAAGGCTCATTTACTTGCAAAAATGTCAAAGTTGTA
GAACATCAGAAGCAGAAAAAACTTCATGAGTCAAAAGAAAAGAATAAGAA
GTGCAAGAAAATTAAATGTCCAGTTTCACTTTGTAATGAAATTAAGGTCA
TGGCAACAGGAACTTCAGAAGATGTTCATAACAACAGGGACTCAAAGATG
AGTGGTGAATACACAAACAATGATGTTTCTTATTCTAGTAGATCCATAAA
AGCTCCTCAAAATGAAATCAATGGAATTGTGTATGCTTCTTTTTCTTCTT
CTAATTCTTCTGCAAGTGATTCCTTTAGAGGAATGCCATTAAGGAAACTT
TCTGGTTGTTATGAGTATAGAATGGTGGTTGACCCTGTTACAGGTTTAAC
TAGAGACCCTTCTATTCTGAGAGGTACCACTTGTTCTTATTCTGAGTGTG
GTGAGATTTTCATGAATGCTGAAAGTTTGGAGCAACATCAGGCTCATAAA
CATCCAGGTATATGTTTCCTTTTCATACTTTCCCATTTTAATTACTTACA
TATTAACACTGATTTAAAATTGTGATTTTGATTCTAGTTGGTAGCAATTA
TGTTGAGTAATTACTCATCACACATATAATAGAGAAAAAAATGTCACTAA
TACAAGTGATTACAATGAGTGGGATACTCTCCGGTTCAGTACTGAAGAGT
AAACATGTGTCAAAAAAATCTTTAACTATTATAATTACATGTTATTTTCT
ATTAATAAATAAATAAAAATTCTTTAAAAGAATTTCATCCTTACATCTCA
GTATTAAAGAGGAGTTGAAATCTATTACAATACAATTATGAATTTTTTAA
ATTTGTTATGTTATGTTCTCTATTTTTGGTTAGTGCAATTTAGACGTCTA
GAATGTTTTGTCAAAGAATTTTTTTAACATTTCTAGTTTCAATACCAAAT
TACCAATCACTCATAACATTATCTTTCTCACTATACAAATTTCAGTTTCT
GAGCTTGTTCCAGAAGATACAAGCAAGAACATAGTAGAAATCATATTCAA
ATCAAGCTGGTTAAAGAAACAATCATCAATATACAAAATTGACCGCATCC
TTAAGGTCCAAAACACCCAGAAAACGCTTTCCAAATTTGAAGAATACAGA
GATTCAATCAAAGACAAAGCAATACAACATTCTAAGAAACACCCTCGTTG
CATAGCAGATGGTAATGAAGTACTAAGGTTCCATTGCACCACTTTTATGT
GCACATTAGGCCTAAGTGGCACTTCCAACCTTTGCAACTTAACACCACAA
TGCAAAGCATGCAACATAATAAAGAATGGTTTCAAGGTCACAGAAGAAGA
ATCAAAGGGTATATTGACATATGCAACAAGTGGAAAGGCACATGAAAAGG
TTGATGAGAATAATGAGAGAAGGGCAATGTTGGTTTGCAGGGTTATAGCA
GGGAGGGTGAAGAAGAATGGTGCAGAAAGTGGTAGCATGGAAGATTATGA
TTCTGTTGTAGTAGGTGATGATGGTGATTATTCAAATTTGGATGAGTTGT
ATGTTTTCAACCACAGAGCTATACTTCCTTGCTTTGTTGTAATCTATAGA
ACTTTTTGA

protein sequence of rna-TanjilR_24179_La_Tanjil_v1.0

>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=406bp
MRKHRTHRRVTNTNDVNQNQSQKPQKREKQKQASWAMVKGSFTCKNVKVV
EHQKQKKLHESKEKNKKCKKIKCPVSLCNEIKVMATGTSEDVHNNRDSKM
SGEYTNNDVSYSSRSIKAPQNEINGIVYASFSSSNSSASDSFRGMPLRKL
SGCYEYRMVVDPVTGLTRDPSILRGTTCSYSECGEIFMNAESLEQHQAHK
HPVSELVPEDTSKNIVEIIFKSSWLKKQSSIYKIDRILKVQNTQKTLSKF
EEYRDSIKDKAIQHSKKHPRCIADGNEVLRFHCTTFMCTLGLSGTSNLCN
LTPQCKACNIIKNGFKVTEEESKGILTYATSGKAHEKVDENNERRAMLVC
RVIAGRVKKNGAESGSMEDYDSVVVGDDGDYSNLDELYVFNHRAILPCFV
VIYRTF

mRNA from alignment at Chr_LG09-CM007369.1:18260430..18262138-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179; organism=Lupinus angustifolius; type=mRNA; length=1709bp; location=Sequence derived from: Chr_LG09-CM007369.1:18260430..18262138- (Lupinus angustifolius
ATGAGAAAACATAGAACCCATAGAAGAGTCACTAACACCAATGATGTAAA
CCAAAACCAAAGCCAAAAGCCACAGAAAAGAGAAAAACAAAAACAAGCGT
CATGGGCTATGGTAAAAGGCTCATTTACTTGCAAAAATGTCAAAGTTGTA
GAACATCAGAAGCAGAAAAAACTTCATGAGTCAAAAGAAAAGAATAAGAA
GTGCAAGAAAATTAAATGTCCAGTTTCACTTTGTAATGAAATTAAGGTCA
TGGCAACAGGAACTTCAGAAGATGTTCATAACAACAGGGACTCAAAGATG
AGTGGTGAATACACAAACAATGATGTTTCTTATTCTAGTAGATCCATAAA
AGCTCCTCAAAATGAAATCAATGGAATTGTGTATGCTTCTTTTTCTTCTT
CTAATTCTTCTGCAAGTGATTCCTTTAGAGGAATGCCATTAAGGAAACTT
TCTGGTTGTTATGAGTATAGAATGGTGGTTGACCCTGTTACAGGTTTAAC
TAGAGACCCTTCTATTCTGAGAGGTACCACTTGTTCTTATTCTGAGTGTG
GTGAGATTTTCATGAATGCTGAAAGTTTGGAGCAACATCAGGCTCATAAA
CATCCAGGTATATGTTTCCTTTTCATACTTTCCCATTTTAATTACTTACA
TATTAACACTGATTTAAAATTGTGATTTTGATTCTAGTTGGTAGCAATTA
TGTTGAGTAATTACTCATCACACATATAATAGAGAAAAAAATGTCACTAA
TACAAGTGATTACAATGAGTGGGATACTCTCCGGTTCAGTACTGAAGAGT
AAACATGTGTCAAAAAAATCTTTAACTATTATAATTACATGTTATTTTCT
ATTAATAAATAAATAAAAATTCTTTAAAAGAATTTCATCCTTACATCTCA
GTATTAAAGAGGAGTTGAAATCTATTACAATACAATTATGAATTTTTTAA
ATTTGTTATGTTATGTTCTCTATTTTTGGTTAGTGCAATTTAGACGTCTA
GAATGTTTTGTCAAAGAATTTTTTTAACATTTCTAGTTTCAATACCAAAT
TACCAATCACTCATAACATTATCTTTCTCACTATACAAATTTCAGTTTCT
GAGCTTGTTCCAGAAGATACAAGCAAGAACATAGTAGAAATCATATTCAA
ATCAAGCTGGTTAAAGAAACAATCATCAATATACAAAATTGACCGCATCC
TTAAGGTCCAAAACACCCAGAAAACGCTTTCCAAATTTGAAGAATACAGA
GATTCAATCAAAGACAAAGCAATACAACATTCTAAGAAACACCCTCGTTG
CATAGCAGATGGTAATGAAGTACTAAGGTTCCATTGCACCACTTTTATGT
GCACATTAGGCCTAAGTGGCACTTCCAACCTTTGCAACTTAACACCACAA
TGCAAAGCATGCAACATAATAAAGAATGGTTTCAAGGTCACAGAAGAAGA
ATCAAAGGGTATATTGACATATGCAACAAGTGGAAAGGCACATGAAAAGG
TTGATGAGAATAATGAGAGAAGGGCAATGTTGGTTTGCAGGGTTATAGCA
GGGAGGGTGAAGAAGAATGGTGCAGAAAGTGGTAGCATGGAAGATTATGA
TTCTGTTGTAGTAGGTGATGATGGTGATTATTCAAATTTGGATGAGTTGT
ATGTTTTCAACCACAGAGCTATACTTCCTTGCTTTGTTGTAATCTATAGA
ACTTTTTGA

Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18260430..18262138-

>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179; organism=Lupinus angustifolius; type=CDS; length=1221bp; location=Sequence derived from: Chr_LG09-CM007369.1:18260430..18262138- (Lupinus angustifolius
ATGAGAAAACATAGAACCCATAGAAGAGTCACTAACACCAATGATGTAAA
CCAAAACCAAAGCCAAAAGCCACAGAAAAGAGAAAAACAAAAACAAGCGT
CATGGGCTATGGTAAAAGGCTCATTTACTTGCAAAAATGTCAAAGTTGTA
GAACATCAGAAGCAGAAAAAACTTCATGAGTCAAAAGAAAAGAATAAGAA
GTGCAAGAAAATTAAATGTCCAGTTTCACTTTGTAATGAAATTAAGGTCA
TGGCAACAGGAACTTCAGAAGATGTTCATAACAACAGGGACTCAAAGATG
AGTGGTGAATACACAAACAATGATGTTTCTTATTCTAGTAGATCCATAAA
AGCTCCTCAAAATGAAATCAATGGAATTGTGTATGCTTCTTTTTCTTCTT
CTAATTCTTCTGCAAGTGATTCCTTTAGAGGAATGCCATTAAGGAAACTT
TCTGGTTGTTATGAGTATAGAATGGTGGTTGACCCTGTTACAGGTTTAAC
TAGAGACCCTTCTATTCTGAGAGGTACCACTTGTTCTTATTCTGAGTGTG
GTGAGATTTTCATGAATGCTGAAAGTTTGGAGCAACATCAGGCTCATAAA
CATCCAGTTTCTGAGCTTGTTCCAGAAGATACAAGCAAGAACATAGTAGA
AATCATATTCAAATCAAGCTGGTTAAAGAAACAATCATCAATATACAAAA
TTGACCGCATCCTTAAGGTCCAAAACACCCAGAAAACGCTTTCCAAATTT
GAAGAATACAGAGATTCAATCAAAGACAAAGCAATACAACATTCTAAGAA
ACACCCTCGTTGCATAGCAGATGGTAATGAAGTACTAAGGTTCCATTGCA
CCACTTTTATGTGCACATTAGGCCTAAGTGGCACTTCCAACCTTTGCAAC
TTAACACCACAATGCAAAGCATGCAACATAATAAAGAATGGTTTCAAGGT
CACAGAAGAAGAATCAAAGGGTATATTGACATATGCAACAAGTGGAAAGG
CACATGAAAAGGTTGATGAGAATAATGAGAGAAGGGCAATGTTGGTTTGC
AGGGTTATAGCAGGGAGGGTGAAGAAGAATGGTGCAGAAAGTGGTAGCAT
GGAAGATTATGATTCTGTTGTAGTAGGTGATGATGGTGATTATTCAAATT
TGGATGAGTTGTATGTTTTCAACCACAGAGCTATACTTCCTTGCTTTGTT
GTAATCTATAGAACTTTTTGA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013087	Znf_C2H2_type

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

Search form

rna-TanjilR_24179