rna-TanjilR_24179

Transcript Overview
Namerna-TanjilR_24179
Unique Namerna-TanjilR_24179_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1709
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG09-CM007369.1supercontigChr_LG09-CM007369.1:18260430..18262138 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL183Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL284Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL310Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL467Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1378Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1406Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1546Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1176Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1212Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1389Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR1421Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0994Pisum sativum Cameor genome v1aPisum sativum
anpsR1019Pisum sativum Cameor genome v1aPisum sativum
anpvR1404Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1419Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1204Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1209Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1330Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1133Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1164Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1199Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1185Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1216Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1202Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1153Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1162Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1158Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1163Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1322Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1360Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1064Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1102Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1300Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1323Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1131Cicer arietinum
ancarR1164Cicer arietinum
anccaR1149Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1162Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1323Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1327Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1236Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR1323Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1317Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1327Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1321Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR1165Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1172Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1448Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1463Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Cr_11432.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vfaba.Hedin2.R1.2g081800.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Ca_23830Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Vigun09g169900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vigun09g169900.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_06555.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
rna-XM_014643285.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigan.02G128800.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Phvul.009G121700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan04g182400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vum_02G01051.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_004500533.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vfaba.Tiffany.R1.2g066920.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va04G056310.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat05G0390900-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigst.02G098100.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
jg52636.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
PvulFLAVERTChr09.830Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
evm.model.Chr09.1987Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Psat5g133800.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_09223Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_24179gene-TanjilG_24179_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24179rna-TanjilR_24179_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_24179_La_Tanjil_v1.0rna-TanjilR_24179_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138Lupinus angustifoliusCDS
rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043rna-TanjilR_24179_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18261532..18262138Lupinus angustifoliusexon
rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043rna-TanjilR_24179_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18260430..18261043Lupinus angustifoliusexon


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24179 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.90.228.10coord: 192..405
e-value: 4.0E-21
score: 77.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..34
NoneNo IPR availableSUPERFAMILY56399ADP-ribosylationcoord: 203..404
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 178..201
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 176..201
score: 9.099

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179; organism=Lupinus angustifolius; type=mRNA; length=1709bp
ATGAGAAAACATAGAACCCATAGAAGAGTCACTAACACCAATGATGTAAA
CCAAAACCAAAGCCAAAAGCCACAGAAAAGAGAAAAACAAAAACAAGCGT
CATGGGCTATGGTAAAAGGCTCATTTACTTGCAAAAATGTCAAAGTTGTA
GAACATCAGAAGCAGAAAAAACTTCATGAGTCAAAAGAAAAGAATAAGAA
GTGCAAGAAAATTAAATGTCCAGTTTCACTTTGTAATGAAATTAAGGTCA
TGGCAACAGGAACTTCAGAAGATGTTCATAACAACAGGGACTCAAAGATG
AGTGGTGAATACACAAACAATGATGTTTCTTATTCTAGTAGATCCATAAA
AGCTCCTCAAAATGAAATCAATGGAATTGTGTATGCTTCTTTTTCTTCTT
CTAATTCTTCTGCAAGTGATTCCTTTAGAGGAATGCCATTAAGGAAACTT
TCTGGTTGTTATGAGTATAGAATGGTGGTTGACCCTGTTACAGGTTTAAC
TAGAGACCCTTCTATTCTGAGAGGTACCACTTGTTCTTATTCTGAGTGTG
GTGAGATTTTCATGAATGCTGAAAGTTTGGAGCAACATCAGGCTCATAAA
CATCCAGGTATATGTTTCCTTTTCATACTTTCCCATTTTAATTACTTACA
TATTAACACTGATTTAAAATTGTGATTTTGATTCTAGTTGGTAGCAATTA
TGTTGAGTAATTACTCATCACACATATAATAGAGAAAAAAATGTCACTAA
TACAAGTGATTACAATGAGTGGGATACTCTCCGGTTCAGTACTGAAGAGT
AAACATGTGTCAAAAAAATCTTTAACTATTATAATTACATGTTATTTTCT
ATTAATAAATAAATAAAAATTCTTTAAAAGAATTTCATCCTTACATCTCA
GTATTAAAGAGGAGTTGAAATCTATTACAATACAATTATGAATTTTTTAA
ATTTGTTATGTTATGTTCTCTATTTTTGGTTAGTGCAATTTAGACGTCTA
GAATGTTTTGTCAAAGAATTTTTTTAACATTTCTAGTTTCAATACCAAAT
TACCAATCACTCATAACATTATCTTTCTCACTATACAAATTTCAGTTTCT
GAGCTTGTTCCAGAAGATACAAGCAAGAACATAGTAGAAATCATATTCAA
ATCAAGCTGGTTAAAGAAACAATCATCAATATACAAAATTGACCGCATCC
TTAAGGTCCAAAACACCCAGAAAACGCTTTCCAAATTTGAAGAATACAGA
GATTCAATCAAAGACAAAGCAATACAACATTCTAAGAAACACCCTCGTTG
CATAGCAGATGGTAATGAAGTACTAAGGTTCCATTGCACCACTTTTATGT
GCACATTAGGCCTAAGTGGCACTTCCAACCTTTGCAACTTAACACCACAA
TGCAAAGCATGCAACATAATAAAGAATGGTTTCAAGGTCACAGAAGAAGA
ATCAAAGGGTATATTGACATATGCAACAAGTGGAAAGGCACATGAAAAGG
TTGATGAGAATAATGAGAGAAGGGCAATGTTGGTTTGCAGGGTTATAGCA
GGGAGGGTGAAGAAGAATGGTGCAGAAAGTGGTAGCATGGAAGATTATGA
TTCTGTTGTAGTAGGTGATGATGGTGATTATTCAAATTTGGATGAGTTGT
ATGTTTTCAACCACAGAGCTATACTTCCTTGCTTTGTTGTAATCTATAGA
ACTTTTTGA
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protein sequence of rna-TanjilR_24179_La_Tanjil_v1.0

>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=406bp
MRKHRTHRRVTNTNDVNQNQSQKPQKREKQKQASWAMVKGSFTCKNVKVV
EHQKQKKLHESKEKNKKCKKIKCPVSLCNEIKVMATGTSEDVHNNRDSKM
SGEYTNNDVSYSSRSIKAPQNEINGIVYASFSSSNSSASDSFRGMPLRKL
SGCYEYRMVVDPVTGLTRDPSILRGTTCSYSECGEIFMNAESLEQHQAHK
HPVSELVPEDTSKNIVEIIFKSSWLKKQSSIYKIDRILKVQNTQKTLSKF
EEYRDSIKDKAIQHSKKHPRCIADGNEVLRFHCTTFMCTLGLSGTSNLCN
LTPQCKACNIIKNGFKVTEEESKGILTYATSGKAHEKVDENNERRAMLVC
RVIAGRVKKNGAESGSMEDYDSVVVGDDGDYSNLDELYVFNHRAILPCFV
VIYRTF
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mRNA from alignment at Chr_LG09-CM007369.1:18260430..18262138-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179; organism=Lupinus angustifolius; type=mRNA; length=1709bp; location=Sequence derived from: Chr_LG09-CM007369.1:18260430..18262138- (Lupinus angustifolius
ATGAGAAAACATAGAACCCATAGAAGAGTCACTAACACCAATGATGTAAA
CCAAAACCAAAGCCAAAAGCCACAGAAAAGAGAAAAACAAAAACAAGCGT
CATGGGCTATGGTAAAAGGCTCATTTACTTGCAAAAATGTCAAAGTTGTA
GAACATCAGAAGCAGAAAAAACTTCATGAGTCAAAAGAAAAGAATAAGAA
GTGCAAGAAAATTAAATGTCCAGTTTCACTTTGTAATGAAATTAAGGTCA
TGGCAACAGGAACTTCAGAAGATGTTCATAACAACAGGGACTCAAAGATG
AGTGGTGAATACACAAACAATGATGTTTCTTATTCTAGTAGATCCATAAA
AGCTCCTCAAAATGAAATCAATGGAATTGTGTATGCTTCTTTTTCTTCTT
CTAATTCTTCTGCAAGTGATTCCTTTAGAGGAATGCCATTAAGGAAACTT
TCTGGTTGTTATGAGTATAGAATGGTGGTTGACCCTGTTACAGGTTTAAC
TAGAGACCCTTCTATTCTGAGAGGTACCACTTGTTCTTATTCTGAGTGTG
GTGAGATTTTCATGAATGCTGAAAGTTTGGAGCAACATCAGGCTCATAAA
CATCCAGGTATATGTTTCCTTTTCATACTTTCCCATTTTAATTACTTACA
TATTAACACTGATTTAAAATTGTGATTTTGATTCTAGTTGGTAGCAATTA
TGTTGAGTAATTACTCATCACACATATAATAGAGAAAAAAATGTCACTAA
TACAAGTGATTACAATGAGTGGGATACTCTCCGGTTCAGTACTGAAGAGT
AAACATGTGTCAAAAAAATCTTTAACTATTATAATTACATGTTATTTTCT
ATTAATAAATAAATAAAAATTCTTTAAAAGAATTTCATCCTTACATCTCA
GTATTAAAGAGGAGTTGAAATCTATTACAATACAATTATGAATTTTTTAA
ATTTGTTATGTTATGTTCTCTATTTTTGGTTAGTGCAATTTAGACGTCTA
GAATGTTTTGTCAAAGAATTTTTTTAACATTTCTAGTTTCAATACCAAAT
TACCAATCACTCATAACATTATCTTTCTCACTATACAAATTTCAGTTTCT
GAGCTTGTTCCAGAAGATACAAGCAAGAACATAGTAGAAATCATATTCAA
ATCAAGCTGGTTAAAGAAACAATCATCAATATACAAAATTGACCGCATCC
TTAAGGTCCAAAACACCCAGAAAACGCTTTCCAAATTTGAAGAATACAGA
GATTCAATCAAAGACAAAGCAATACAACATTCTAAGAAACACCCTCGTTG
CATAGCAGATGGTAATGAAGTACTAAGGTTCCATTGCACCACTTTTATGT
GCACATTAGGCCTAAGTGGCACTTCCAACCTTTGCAACTTAACACCACAA
TGCAAAGCATGCAACATAATAAAGAATGGTTTCAAGGTCACAGAAGAAGA
ATCAAAGGGTATATTGACATATGCAACAAGTGGAAAGGCACATGAAAAGG
TTGATGAGAATAATGAGAGAAGGGCAATGTTGGTTTGCAGGGTTATAGCA
GGGAGGGTGAAGAAGAATGGTGCAGAAAGTGGTAGCATGGAAGATTATGA
TTCTGTTGTAGTAGGTGATGATGGTGATTATTCAAATTTGGATGAGTTGT
ATGTTTTCAACCACAGAGCTATACTTCCTTGCTTTGTTGTAATCTATAGA
ACTTTTTGA
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Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18260430..18262138-

>rna-TanjilR_24179_La_Tanjil_v1.0 ID=rna-TanjilR_24179_La_Tanjil_v1.0; Name=rna-TanjilR_24179; organism=Lupinus angustifolius; type=CDS; length=1221bp; location=Sequence derived from: Chr_LG09-CM007369.1:18260430..18262138- (Lupinus angustifolius
ATGAGAAAACATAGAACCCATAGAAGAGTCACTAACACCAATGATGTAAA
CCAAAACCAAAGCCAAAAGCCACAGAAAAGAGAAAAACAAAAACAAGCGT
CATGGGCTATGGTAAAAGGCTCATTTACTTGCAAAAATGTCAAAGTTGTA
GAACATCAGAAGCAGAAAAAACTTCATGAGTCAAAAGAAAAGAATAAGAA
GTGCAAGAAAATTAAATGTCCAGTTTCACTTTGTAATGAAATTAAGGTCA
TGGCAACAGGAACTTCAGAAGATGTTCATAACAACAGGGACTCAAAGATG
AGTGGTGAATACACAAACAATGATGTTTCTTATTCTAGTAGATCCATAAA
AGCTCCTCAAAATGAAATCAATGGAATTGTGTATGCTTCTTTTTCTTCTT
CTAATTCTTCTGCAAGTGATTCCTTTAGAGGAATGCCATTAAGGAAACTT
TCTGGTTGTTATGAGTATAGAATGGTGGTTGACCCTGTTACAGGTTTAAC
TAGAGACCCTTCTATTCTGAGAGGTACCACTTGTTCTTATTCTGAGTGTG
GTGAGATTTTCATGAATGCTGAAAGTTTGGAGCAACATCAGGCTCATAAA
CATCCAGTTTCTGAGCTTGTTCCAGAAGATACAAGCAAGAACATAGTAGA
AATCATATTCAAATCAAGCTGGTTAAAGAAACAATCATCAATATACAAAA
TTGACCGCATCCTTAAGGTCCAAAACACCCAGAAAACGCTTTCCAAATTT
GAAGAATACAGAGATTCAATCAAAGACAAAGCAATACAACATTCTAAGAA
ACACCCTCGTTGCATAGCAGATGGTAATGAAGTACTAAGGTTCCATTGCA
CCACTTTTATGTGCACATTAGGCCTAAGTGGCACTTCCAACCTTTGCAAC
TTAACACCACAATGCAAAGCATGCAACATAATAAAGAATGGTTTCAAGGT
CACAGAAGAAGAATCAAAGGGTATATTGACATATGCAACAAGTGGAAAGG
CACATGAAAAGGTTGATGAGAATAATGAGAGAAGGGCAATGTTGGTTTGC
AGGGTTATAGCAGGGAGGGTGAAGAAGAATGGTGCAGAAAGTGGTAGCAT
GGAAGATTATGATTCTGTTGTAGTAGGTGATGATGGTGATTATTCAAATT
TGGATGAGTTGTATGTTTTCAACCACAGAGCTATACTTCCTTGCTTTGTT
GTAATCTATAGAACTTTTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding