rna-TanjilR_01647
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: TRM9_ARATH (tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Arabidopsis thaliana OX=3702 GN=TRM9 PE=1 SV=1) HSP 1 Score: 385.571 bits (989), Expect = 4.954e-128 Identity = 212/305 (69.51%), Postives = 239/305 (78.36%), Query Frame = 1 Query: 235 TPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQEDKSLLTKWTPLSQKYGEEWIGPG----SPRARTXXXXXXXXXXXXXXXXXGEHMKDFNESATKKIQETEDLRDQDQHYS---------RDLKDNKNIE--------NQQEYFVPWHLPYHRAEVSGSSAQALANGLATRDDKKGAVVYNRYYHVFSEGELER 1086 TPEIEKKYVH VYDAIAPHFSSTRFAKWPKVA FL SLPSGS++LDAGCGNGKYLGLN CFFIGCDIS LIKIC+D+G EVLVADAVNLPY+ FGDAAISIAVLHHLSTENRR+KAIEELVR+VK GG VLITVWA EQED SLLTKWTPLS KY EEW+GPG SPR R SLESIPE+E S+ + +++ + I E+E+ + + S + KD K++E +QQEYFVPWHLPYHRAEVSG+SA ALA+GLA +DD+KGAVVYNRYYHVFSEGELER Sbjct: 68 TPEIEKKYVHRVYDAIAPHFSSTRFAKWPKVAAFLESLPSGSVILDAGCGNGKYLGLNPSCFFIGCDISHPLIKICSDKGQEVLVADAVNLPYREEFGDAAISIAVLHHLSTENRRKKAIEELVRVVKPGGFVLITVWAAEQEDTSLLTKWTPLSAKYVEEWVGPGSPMNSPRVRNNPFFSLESIPETEVSTKEQKVENSQFIGLESIPESEESTREQKGESIIPETKASIVEQKDEKSVEESLEALKKSQQEYFVPWHLPYHRAEVSGASASALASGLAKKDDRKGAVVYNRYYHVFSEGELER 372
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: ALKB8_MOUSE (Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus OX=10090 GN=Alkbh8 PE=1 SV=1) HSP 1 Score: 199.519 bits (506), Expect = 2.178e-54 Identity = 121/345 (35.07%), Postives = 182/345 (52.75%), Query Frame = 1 Query: 73 FSSDICRSRFGSMKAINTKVASTLSTLASNREPGITDSMSVSE-----NPNTSSTSVKSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQEDKSLLTKW---TPLSQKYGEEWIGPGSPRARTXXXXXXXXXXXXXXXXXGEHMKDFNESATKKIQETEDLRDQDQHYSRDLKDNKNIENQQEYFVPWHLPYHRAEVSGSSAQALANGLATRDDKKGAVVYNRYYHVFSEGELE 1083 F I S G + + ++ + R P SV + P + + S K E+E+K+VH VY+ IA HFSSTR + WP++ FL +LPSGS+V D GCGNGKYLG+N+D + IGCD S +L+ IC +R + LV DA+ +P ++G DA ISIAV+HH +T RR +A++EL R+++ GG LI VWA+EQE K+ +K+ +SQ +E S + + S + + E ++K+ +E + N+ + Q+ VPWHL + G +G+A D + V++RYYHVF +GELE Sbjct: 308 FKGGIITSDIGDLTLSKRGMRTSFTFRKVRRMPCNCSYSSVCDRQRKATPPSLTESSKEALELEQKHVHQVYNEIASHFSSTRHSPWPRIVEFLKALPSGSIVADIGCGNGKYLGINKDLYMIGCDRSQNLVDICRERQFQALVCDALAVPVRSGSCDACISIAVIHHFATAERRVEALQELARLLRPGGQALIYVWAMEQEYKNQKSKYLRGKRISQGDKDELNSATSTEEFLVNQTPEGVNEDPALSVNSSSITKEEEYKSRKVPNSE----------LPIHINRTCFHSQDVLVPWHLKRN----PGKDKAIEPSGVAGCPDP--SPVFHRYYHVFCDGELE 636
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: ALKB8_XENTR (Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis OX=8364 GN=alkbh8 PE=2 SV=2) HSP 1 Score: 195.667 bits (496), Expect = 3.585e-53 Identity = 116/306 (37.91%), Postives = 161/306 (52.61%), Query Frame = 1 Query: 169 PGITDSMSVSENPNTSSTSVKSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQEDKSLLTKWTPLSQKYGEEWIGPGSPRARTXXXXXXXXXXXXXXXXXGEHMKDFNESATKKIQETEDLRDQDQHYSRDLKDNKNIENQQEYFVPWHL-PYHRAEVSGSSAQALANGLATRDDKKGAVVYNRYYHVFSEGELE 1083 P DS + + + +E++YVH VYD IA HFSSTR WPK+ FL+SLP GSLV D GCGNGKYLG+N+D IGCD S +L+ IC +R E V DA+++P++ G DA ISIAV+HH +TE RR A++EL+R+++KGG LI VWA+EQE K +K+ K + GP S T + A I ++ +S+DL VPWHL P ++++V+ + + + VY+R+YHVF EGELE Sbjct: 344 PSECDSQQTQKEKSPPTVGELGASTLEREYVHKVYDDIAGHFSSTRHTPWPKIGDFLASLPKGSLVADVGCGNGKYLGVNKDLCMIGCDRSKNLVDICRERTFEAFVCDALSVPFRAGAFDACISIAVIHHFATEERRIAALQELIRLLRKGGKALIYVWALEQEYKKNKSKYL----KESKTSQGPSSDALGT----------------------NLAVKAPLPIH-----TNRTSFHSQDL------------LVPWHLKPTNKSKVTPENKE------QNEKEHGPDSVYHRFYHVFCEGELE 600
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: ALKB8_BOVIN (Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus OX=9913 GN=ALKBH8 PE=2 SV=1) HSP 1 Score: 192.971 bits (489), Expect = 5.381e-52 Identity = 119/316 (37.66%), Postives = 167/316 (52.85%), Query Frame = 1 Query: 169 PGITDSMSVSENPNTSSTSVKSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQE---DKSLLTKWTPLSQKYGEEWIGPGSPRARTXXXXXXXXXXXXXXXXXGEHMKDFNESATKKIQETEDLRDQDQHYSRDLKD-------NKNIENQQEYFVPWHLPYHRAEVSGSSAQALANG-LATRDDKKGAVVYNRYYHVFSEGELE 1083 P + DS + E P + S K ++E+ YVH VY+ IA HFSSTR WP + FL +LPSGSLV D GCGNGKYLG+N + + IGCD S +L+ IC +R ++ V DA+ +P ++G DA ISIAV+HH +T RR A++ELVR+++ GG LI VWA+EQE KS + SQ EE S + L N+ + + D +D + S+++ + N+ + Q+ VPWH + G + G L +RD V++RYYHVF EGELE Sbjct: 346 PLVCDS-QMKETPASFPESDKEALQLEQDYVHRVYEEIARHFSSTRHTPWPHIVEFLKALPSGSLVADIGCGNGKYLGINNELYMIGCDHSQNLVDICRERQYQAFVCDALAVPIRSGSCDACISIAVIHHFATAERRVAALQELVRLLRPGGKALIYVWAMEQEYNKKKSKYLRENRTSQGMKEEISNDASVQELLVKQLPNVG----------------NQDSAHSVSSINDFQDGGCN-SKNVANSKLPIHTNRTSFHSQDLLVPWHFKGN----PGKDKRVEPFGPLGSRDP---GPVFHRYYHVFCEGELE 636
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: ALKB8_HUMAN (Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens OX=9606 GN=ALKBH8 PE=1 SV=2) HSP 1 Score: 189.889 bits (481), Expect = 6.230e-51 Identity = 116/315 (36.83%), Postives = 169/315 (53.65%), Query Frame = 1 Query: 169 PGITDSMSVSENPNTSSTSVKSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQE---DKSLLTKWTPLSQKYGEEWIGPGSPRARTXXXXXXXXXXXXXXXXXGEHMKDF----NESATKKIQETEDLRDQDQHYSRD---LKDNKNIENQQEYFVPWHLPYHRAEVSGSSAQALANGLATRDDKKGAVVYNRYYHVFSEGELE 1083 P + DS E P + S K +E++YVH VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG+N++ + IGCD S +L+ IC +R + V DA+ +P ++G DA ISIAV+HH +T RR A++E+VR+++ GG LI VWA+EQE KS + SQ EE S + E M+D + S+ +I ++++ + S + N+ Q+ VPWHL + + G + + ++D + V++RYYHVF EGELE Sbjct: 346 PLVCDSQR-KETPPSFPESDKEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGINKELYMIGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLRGNRNSQGKKEEMNSDTSVQRSLV-----------------EQMRDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPVHVNRTSFYSQDVLVPWHLKGNPDK--GKPVEPFG-PIGSQDP---SPVFHRYYHVFREGELE 636
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: ALKB8_MACFA (Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis OX=9541 GN=ALKBH8 PE=2 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 3.958e-50 Identity = 115/315 (36.51%), Postives = 168/315 (53.33%), Query Frame = 1 Query: 169 PGITDSMSVSENPNTSSTSVKSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQE---DKSLLTKWTPLSQKYGEEWIGPGSPRARTXXXXXXXXXXXXXXXXXGEHMKDF----NESATKKIQETEDLRDQDQHYSRD---LKDNKNIENQQEYFVPWHLPYHRAEVSGSSAQALANGLATRDDKKGAVVYNRYYHVFSEGELE 1083 P + DS E P + S + +E++YVH VY+ IA HFSSTR WP + FL +LPSGS+V D GCGNGKYLG+N++ + +GCD S +L+ IC +R + V DA+ +P ++G DA ISIAV+HH +T RR A++E+VR+++ GG LI VWA+EQE KS K SQ EE S + E M D + S+ +I ++++ + S + N+ Q+ VPWHL + + G + + ++D + V++RYYHVF EGELE Sbjct: 346 PLVCDSQR-KETPPSFPESDEEASRLEQEYVHQVYEEIAGHFSSTRHTPWPHIVEFLKALPSGSIVADIGCGNGKYLGVNKELYMVGCDRSQNLVDICRERQFQAFVCDALAVPVRSGSCDACISIAVIHHFATAERRVAALQEIVRLLRPGGKALIYVWAMEQEYNKQKSKYLKGNRNSQGKKEEMNSDTSVQRSLV-----------------EQMPDMGSRDSASSVPRINDSQEGGCNSRQVSNSKLPIHVNRTSFYSQDMLVPWHLKGNPDK--GKPVEPFG-PIGSQDP---SPVFHRYYHVFREGELE 636
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: TRM9_YEAST (tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRM9 PE=1 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 3.910e-39 Identity = 75/149 (50.34%), Postives = 98/149 (65.77%), Query Frame = 1 Query: 226 VKSTPEIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRG----HEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQ 660 + E E++YVH VY+ IAPHFS TR+ WP V FL + P GS+ +D GCGNGKYLG+N D + IG D S LI+ CA RG + +LVAD +NLP+K D AISIAV+HH ST RR + I ++ +++GG LI WA+EQ Sbjct: 3 INQAAEKEQEYVHKVYNEIAPHFSQTRYKPWPIVTQFLKTRPMGSIGIDVGCGNGKYLGVNPDIYIIGSDRSDGLIE-CA-RGINPSYNLLVADGLNLPHKNETFDFAISIAVVHHWSTRERRVEVIRHVLSKLRQGGQALIYCWALEQ 149
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: TRM9_SCHPO (tRNA (carboxymethyluridine(34)-5-O)-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=trm9 PE=3 SV=1) HSP 1 Score: 145.206 bits (365), Expect = 1.621e-38 Identity = 68/142 (47.89%), Postives = 98/142 (69.01%), Query Frame = 1 Query: 241 EIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQED 666 E E +YVH VYD IA HFS TR+ WP V FL SLP GS+ +D GCGNGKY +N + + IG D L+KI ++ G ++++D +++P+ + D A+SIAV+HH S ENRR +A++E++R + KGG L VWA+EQ++ Sbjct: 4 EYENEYVHQVYDKIATHFSDTRYKPWPVVEKFLKSLPLGSVGVDIGCGNGKYQKVNPNVYMIGSDRCVKLVKIASNLG-PMVISDGLHVPHPSNRFDFALSIAVIHHFSNENRRLQAVQEVLRPLVKGGKALFFVWALEQKN 144
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: TRM9B_MOUSE (Probable tRNA methyltransferase 9B OS=Mus musculus OX=10090 GN=Trmt9b PE=1 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 3.363e-37 Identity = 69/155 (44.52%), Postives = 98/155 (63.23%), Query Frame = 1 Query: 241 EIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQ-----EDKSLLTKWT 690 E+EK++VH VY+ AP+F+ + WP+V FL GSLV D GCG GKYL +N +GCD L++I +RG EV+V D +NLP++ DA ISI V+HH ST+ RR +AI+E+ R++ GG ++I VWA+EQ E + +L W Sbjct: 7 ELEKRHVHSVYENTAPYFTDLQSKAWPRVRQFLQDQKPGSLVADIGCGTGKYLKVNSQVHTLGCDYCGPLVEIARNRGCEVMVCDNLNLPFRDQGFDAIISIGVIHHFSTKERRIRAIKEMARVLAPGGQLMIYVWAMEQKNRRFEKQDVLVPWN 161
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Match: TRM9B_HUMAN (Probable tRNA methyltransferase 9B OS=Homo sapiens OX=9606 GN=TRMT9B PE=2 SV=3) HSP 1 Score: 146.747 bits (369), Expect = 6.725e-37 Identity = 67/155 (43.23%), Postives = 99/155 (63.87%), Query Frame = 1 Query: 241 EIEKKYVHHVYDAIAPHFSSTRFAKWPKVATFLSSLPSGSLVLDAGCGNGKYLGLNRDCFFIGCDISPSLIKICADRGHEVLVADAVNLPYKTGFGDAAISIAVLHHLSTENRRRKAIEELVRIVKKGGLVLITVWAVEQ-----EDKSLLTKWT 690 ++EK++VH+VY++ AP+FS + WP+V FL GSL+ D GCG GKYL +N +GCD L++I +RG E +V D +NLP++ DA ISI V+HH ST+ RR +AI+E+ R++ GG ++I VWA+EQ E + +L W Sbjct: 7 QLEKQHVHNVYESTAPYFSDLQSKAWPRVRQFLQEQKPGSLIADIGCGTGKYLKVNSQVHTVGCDYCGPLVEIARNRGCEAMVCDNLNLPFRDEGFDAIISIGVIHHFSTKQRRIRAIKEMARVLVPGGQLMIYVWAMEQKNRHFEKQDVLVPWN 161 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01647 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_01647_La_Tanjil_v1.0 ID=rna-TanjilR_01647_La_Tanjil_v1.0; Name=rna-TanjilR_01647; organism=Lupinus angustifolius; type=mRNA; length=1826bpback to top protein sequence of rna-TanjilR_01647_La_Tanjil_v1.0 >rna-TanjilR_01647_La_Tanjil_v1.0 ID=rna-TanjilR_01647_La_Tanjil_v1.0; Name=rna-TanjilR_01647_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=390bpback to top mRNA from alignment at Chr_LG09-CM007369.1:18412231..18414056- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_01647_La_Tanjil_v1.0 ID=rna-TanjilR_01647_La_Tanjil_v1.0; Name=rna-TanjilR_01647; organism=Lupinus angustifolius; type=mRNA; length=1826bp; location=Sequence derived from: Chr_LG09-CM007369.1:18412231..18414056- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18412231..18414056- >rna-TanjilR_01647_La_Tanjil_v1.0 ID=rna-TanjilR_01647_La_Tanjil_v1.0; Name=rna-TanjilR_01647; organism=Lupinus angustifolius; type=CDS; length=1173bp; location=Sequence derived from: Chr_LG09-CM007369.1:18412231..18414056- (Lupinus angustifoliusback to top |