rna-TanjilR_01635

Transcript Overview
Namerna-TanjilR_01635
Unique Namerna-TanjilR_01635_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length1230
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG09-CM007369.1supercontigChr_LG09-CM007369.1:18532573..18533802 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL183Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL310Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL467Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR1378Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR1406Cicer arietinum ICC 4958 genome v2Cicer arietinum
anccR1489Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1499Cajanus cajan Asha genome v1.0Cajanus cajan
anccR1520Cajanus cajan Asha genome v1.0Cajanus cajan
ancaR1176Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR1212Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancrR1389Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0994Pisum sativum Cameor genome v1aPisum sativum
anpsR1019Pisum sativum Cameor genome v1aPisum sativum
anpvR1404Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR1417Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR1204Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR1209Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR1330Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR1358Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR1133Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR1164Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anvfhR1199Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1185Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR1216Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
antifR1202Vicia faba cv. Tiffany genome v1.0Vicia faba
anvrvR1153Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR1164Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR1158Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR1163Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR1322Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR1342Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR1064Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR1102Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR1300Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR1322Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR1131Cicer arietinum
ancarR1164Cicer arietinum
anccaR1149Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR1162Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR1323Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR1326Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR1236Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR1272Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR1323Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR1317Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR1320Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR1326Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR1330Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvunR1165Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR1172Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR1448Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR1460Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Vigan.02G121600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
rna-XM_014644874.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vum_02G00999.1Vigna umbellata FF25 genome v1.0Vigna umbellata
rna-XM_014648272.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
Vigun09g175600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Phvul.009G030100.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Vum_03G01201.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Vigun09g175600.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
LR48_mrnaVigan07g149800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Phvul.008G172700.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
rna-KK1_005145Cajanus cajan Asha genome v1.0Cajanus cajan
rna-KK1_025219Cajanus cajan Asha genome v1.0Cajanus cajan
Vigun08g099000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Psat02G0228700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigst.02G093300.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun08g099000.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Vigan.03G169700.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
evm.model.Chr09.1937Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_06613.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
LR48_mrnaVigan04g189400Vigna angularis Jingnong 6 genome v1.1Vigna angularis
Vfaba.Tiffany.R1.1g165480.1Vicia faba cv. Tiffany genome v1.0Vicia faba
Va04G057550.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
evm.model.Chr08.1864Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vfaba.Hedin2.R1.1g211640.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cc_v2.0_11672.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
XM_058890286.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vigst.03G108400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Va07G043350.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat2g073160.1Pisum sativum Cameor genome v1aPisum sativum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_02798Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_04981Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_01635gene-TanjilG_01635_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01635rna-TanjilR_01635_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_01635_La_Tanjil_v1.0rna-TanjilR_01635_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01635_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802rna-TanjilR_01635_La_Tanjil_v1.0-exon-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_01635_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802rna-TanjilR_01635_La_Tanjil_v1.0-CDS-Chr_LG09-CM007369.1_La_Tanjil_v1.0-1579734366:18532573..18533802Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_01635 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008889VQPFAMPF05678VQcoord: 157..183
e-value: 2.1E-12
score: 46.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..115
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 129..147
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 92..159

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635; organism=Lupinus angustifolius; type=mRNA; length=1230bp
ATGGATTCTGGTAATAGTGGAAGTGTCTCTTCTAGTGgtgatgaggaata
tgattcacGAGTTGATCACACAACACTACTCCCTTCAAATATCCTCAATC
ATCCTCTCACCCAATTTGCTAAATCTTCATCTTTTGTTTCTTCTCATCAA
CACCAAATCCATCATAACAATCCATCTTTGTTTGATCTTTCATCTAGTTA
CCTCCACTCTCTTTCTCAACCCCATCCAAACACAAATCCAAACTCTTTTC
TAAATTTGGATACTGCTACTAATTCTATATCTCAAGGAAAAAGATCTGAA
CCCAATTGCACCCACCCTTCAAACCTACAAGGTTTTAATCAAGGATCGTT
TCCACCACCTCATGGTTTTGGACATGATGACAATAACAATGCAAGGTTGG
TTTCATCAGCACCTACCAATAATGCAGCAGCGCGAAACTCAAAGAAGAGA
ACTAGAGCTTCTAGAAGAACACCTACCACGGTTCTCACCACCGACACCTC
AAATTTCAGGGCCATGGTTCAAGAATTCACTGGCATCCCTGCACCACCCT
TTTCAGGCACATCATCTTATTCTCGTACTCGCAGGCTTGACCTTCTCACC
GGTTCCTCCTCTTCCTTAAGGGCCACTTCCTCTCATCACTTGGACACAAT
ACCCTCTTTTTACCCTTTGCGTCCTTCACATCAAAAACTTCATCATCAAC
AAAACCCTTTTCCTTCAACTTTGTTgcatactaataataataacatggtT
GATGCTATAGCTTCTTCAATTaccaacaacaataacaactcCATTAACTA
CCAACTACCACCTGATCTGGGTCTACCCTATCACCACCACAACCAATCAC
ACAACGTCATGCTAAGCATGCAACAAAATCACCCTATTTCaacatttcat
caaacacccGCCCTTCATCCTTTAGGAAGCCATGGCTTTTCAGTGTTTGG
TGCAAAGTCTCAAGCAAGTTTATCAGTACAGTCACTGGATGAACTTGGTA
TGAGTAATAATAATGCTGATCTTGTTGGTGCTTATGGAGTACTATCAGGA
CCCCAAGGTCATGGCCATGTAAGTTCTGGTCATGGAAATGGAGATAGAAG
AGAGCTGAACTTGTCAACACCTTCTGCTGCATCAAGAATATTGGACCATG
AAAAGAATTTGGAGAATAATAGCAGTACTATCAATAGAGGAGAAGGTAAC
GTTGATTCGTGGATTTGTTCATCTGATTAG
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protein sequence of rna-TanjilR_01635_La_Tanjil_v1.0

>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=409bp
MDSGNSGSVSSSGDEEYDSRVDHTTLLPSNILNHPLTQFAKSSSFVSSHQ
HQIHHNNPSLFDLSSSYLHSLSQPHPNTNPNSFLNLDTATNSISQGKRSE
PNCTHPSNLQGFNQGSFPPPHGFGHDDNNNARLVSSAPTNNAAARNSKKR
TRASRRTPTTVLTTDTSNFRAMVQEFTGIPAPPFSGTSSYSRTRRLDLLT
GSSSSLRATSSHHLDTIPSFYPLRPSHQKLHHQQNPFPSTLLHTNNNNMV
DAIASSITNNNNNSINYQLPPDLGLPYHHHNQSHNVMLSMQQNHPISTFH
QTPALHPLGSHGFSVFGAKSQASLSVQSLDELGMSNNNADLVGAYGVLSG
PQGHGHVSSGHGNGDRRELNLSTPSAASRILDHEKNLENNSSTINRGEGN
VDSWICSSD
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mRNA from alignment at Chr_LG09-CM007369.1:18532573..18533802+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635; organism=Lupinus angustifolius; type=mRNA; length=1230bp; location=Sequence derived from: Chr_LG09-CM007369.1:18532573..18533802+ (Lupinus angustifolius
ATGGATTCTGGTAATAGTGGAAGTGTCTCTTCTAGTGgtgatgaggaata
tgattcacGAGTTGATCACACAACACTACTCCCTTCAAATATCCTCAATC
ATCCTCTCACCCAATTTGCTAAATCTTCATCTTTTGTTTCTTCTCATCAA
CACCAAATCCATCATAACAATCCATCTTTGTTTGATCTTTCATCTAGTTA
CCTCCACTCTCTTTCTCAACCCCATCCAAACACAAATCCAAACTCTTTTC
TAAATTTGGATACTGCTACTAATTCTATATCTCAAGGAAAAAGATCTGAA
CCCAATTGCACCCACCCTTCAAACCTACAAGGTTTTAATCAAGGATCGTT
TCCACCACCTCATGGTTTTGGACATGATGACAATAACAATGCAAGGTTGG
TTTCATCAGCACCTACCAATAATGCAGCAGCGCGAAACTCAAAGAAGAGA
ACTAGAGCTTCTAGAAGAACACCTACCACGGTTCTCACCACCGACACCTC
AAATTTCAGGGCCATGGTTCAAGAATTCACTGGCATCCCTGCACCACCCT
TTTCAGGCACATCATCTTATTCTCGTACTCGCAGGCTTGACCTTCTCACC
GGTTCCTCCTCTTCCTTAAGGGCCACTTCCTCTCATCACTTGGACACAAT
ACCCTCTTTTTACCCTTTGCGTCCTTCACATCAAAAACTTCATCATCAAC
AAAACCCTTTTCCTTCAACTTTGTTgcatactaataataataacatggtT
GATGCTATAGCTTCTTCAATTaccaacaacaataacaactcCATTAACTA
CCAACTACCACCTGATCTGGGTCTACCCTATCACCACCACAACCAATCAC
ACAACGTCATGCTAAGCATGCAACAAAATCACCCTATTTCaacatttcat
caaacacccGCCCTTCATCCTTTAGGAAGCCATGGCTTTTCAGTGTTTGG
TGCAAAGTCTCAAGCAAGTTTATCAGTACAGTCACTGGATGAACTTGGTA
TGAGTAATAATAATGCTGATCTTGTTGGTGCTTATGGAGTACTATCAGGA
CCCCAAGGTCATGGCCATGTAAGTTCTGGTCATGGAAATGGAGATAGAAG
AGAGCTGAACTTGTCAACACCTTCTGCTGCATCAAGAATATTGGACCATG
AAAAGAATTTGGAGAATAATAGCAGTACTATCAATAGAGGAGAAGGTAAC
GTTGATTCGTGGATTTGTTCATCTGATTAG
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Coding sequence (CDS) from alignment at Chr_LG09-CM007369.1:18532573..18533802+

>rna-TanjilR_01635_La_Tanjil_v1.0 ID=rna-TanjilR_01635_La_Tanjil_v1.0; Name=rna-TanjilR_01635; organism=Lupinus angustifolius; type=CDS; length=1230bp; location=Sequence derived from: Chr_LG09-CM007369.1:18532573..18533802+ (Lupinus angustifolius
ATGGATTCTGGTAATAGTGGAAGTGTCTCTTCTAGTGgtgatgaggaata
tgattcacGAGTTGATCACACAACACTACTCCCTTCAAATATCCTCAATC
ATCCTCTCACCCAATTTGCTAAATCTTCATCTTTTGTTTCTTCTCATCAA
CACCAAATCCATCATAACAATCCATCTTTGTTTGATCTTTCATCTAGTTA
CCTCCACTCTCTTTCTCAACCCCATCCAAACACAAATCCAAACTCTTTTC
TAAATTTGGATACTGCTACTAATTCTATATCTCAAGGAAAAAGATCTGAA
CCCAATTGCACCCACCCTTCAAACCTACAAGGTTTTAATCAAGGATCGTT
TCCACCACCTCATGGTTTTGGACATGATGACAATAACAATGCAAGGTTGG
TTTCATCAGCACCTACCAATAATGCAGCAGCGCGAAACTCAAAGAAGAGA
ACTAGAGCTTCTAGAAGAACACCTACCACGGTTCTCACCACCGACACCTC
AAATTTCAGGGCCATGGTTCAAGAATTCACTGGCATCCCTGCACCACCCT
TTTCAGGCACATCATCTTATTCTCGTACTCGCAGGCTTGACCTTCTCACC
GGTTCCTCCTCTTCCTTAAGGGCCACTTCCTCTCATCACTTGGACACAAT
ACCCTCTTTTTACCCTTTGCGTCCTTCACATCAAAAACTTCATCATCAAC
AAAACCCTTTTCCTTCAACTTTGTTgcatactaataataataacatggtT
GATGCTATAGCTTCTTCAATTaccaacaacaataacaactcCATTAACTA
CCAACTACCACCTGATCTGGGTCTACCCTATCACCACCACAACCAATCAC
ACAACGTCATGCTAAGCATGCAACAAAATCACCCTATTTCaacatttcat
caaacacccGCCCTTCATCCTTTAGGAAGCCATGGCTTTTCAGTGTTTGG
TGCAAAGTCTCAAGCAAGTTTATCAGTACAGTCACTGGATGAACTTGGTA
TGAGTAATAATAATGCTGATCTTGTTGGTGCTTATGGAGTACTATCAGGA
CCCCAAGGTCATGGCCATGTAAGTTCTGGTCATGGAAATGGAGATAGAAG
AGAGCTGAACTTGTCAACACCTTCTGCTGCATCAAGAATATTGGACCATG
AAAAGAATTTGGAGAATAATAGCAGTACTATCAATAGAGGAGAAGGTAAC
GTTGATTCGTGGATTTGTTCATCTGATTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR008889VQ