Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_19350 rna-TanjilR_19350_La_Tanjil_v1.0-protein Lupinus angustifolius polypeptide rna-TanjilR_19350_La_Tanjil_v1.0 rna-TanjilR_19350_La_Tanjil_v1.0 Lupinus angustifolius polypeptide
The following exon feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546 Lupinus angustifolius exon rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146 rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146 Lupinus angustifolius exon
The following CDS feature(s) are a part of this mRNA:
Feature Name Unique Name Species Type
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546 Lupinus angustifolius CDS rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146 rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146 Lupinus angustifolius CDS
Homology
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match:
ZFP34_ORYSJ (Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1)
HSP 1 Score: 107.457 bits (267), Expect = 6.136e-24
Identity = 65/165 (39.39%), Postives = 77/165 (46.67%), Query Frame = 1
Query: 2689 GCCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMVSV 3183
GCCYSI+LKNSH CVE AMHHDCPIC +YLFE+T D+ VLPCGHTIH CL EM +H ++ACPLCSKS+ DMSK WE+LD E+A + NKMV +
Sbjct: 175 GCCYSIVLKNSHACVEGAMHHDCPIC-----------------------------------FEYLFESTNDVSVLPCGHTIHVKCLREMEEH-------------------------------CQFACPLCSKSVCDMSKAWERLDEELA--TISDTCDNKMVRI 271 HSP 2 Score: 56.6102 bits (135), Expect = 6.104e-7
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 2
Query: 269 CQHYRRRCLIRAPCCDEIFDCHHCHNEAKVSKLPDLV 379
C HYRRRC IRAPCC+EIFDC HCHNE K S D V
Sbjct: 61 CAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAV 97
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match:
ZFP34_ARATH (E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1)
HSP 1 Score: 99.7525 bits (247), Expect = 1.961e-21
Identity = 58/162 (35.80%), Postives = 75/162 (46.30%), Query Frame = 1
Query: 2692 CCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMV 3177
CCYS ++++ H CVE AMHH+CP+C +YLF++T+DI VL CGHT+H C ++M H RY CP+CSKSI DMS +W+KLD E+AA PMP Y NKMV
Sbjct: 142 CCYSKIMEDKHQCVEGAMHHNCPVC-----------------------------------FEYLFDSTRDITVLRCGHTMHLECTKDMGLHN-------------------------------RYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMV 237 HSP 2 Score: 58.151 bits (139), Expect = 1.781e-7
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 2
Query: 269 CQHYRRRCLIRAPCCDEIFDCHHCHNEAKVS 361
C HYRRRC IRAPCCDEIFDC HCHNEAK S
Sbjct: 27 CSHYRRRCKIRAPCCDEIFDCRHCHNEAKDS 57
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match:
MIEL1_ARATH (E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1)
HSP 1 Score: 85.8853 bits (211), Expect = 5.566e-17
Identity = 52/163 (31.90%), Postives = 70/163 (42.94%), Query Frame = 1
Query: 2689 GCCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMV 3177
G CY++ L+N+H CVE +M H CPIC +YLF++ KD V+ CGHT+H C EM K ++ CP+CS+S+ DMSK W++LD EI AT MP YR+K V
Sbjct: 131 GSCYAVGLRNNHRCVENSMRHHCPIC-----------------------------------YEYLFDSLKDTNVMKCGHTMHVECYNEMIKRD-------------------------------KFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKV 227
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match:
ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rchy1 PE=1 SV=1)
HSP 1 Score: 63.929 bits (154), Expect = 1.506e-9
Identity = 48/171 (28.07%), Postives = 63/171 (36.84%), Query Frame = 1
Query: 2677 FLCIGC--CYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMVSV 3183
F C+ C C + L+ H C+E +CPIC E H SR++ VLPCGH +H+ C EEM K Y CPLC S DM++ W +LD E+A TPMP Y+N V +
Sbjct: 117 FHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHT------------------SRVVAH-----------------VLPCGHLLHRTCYEEMLKEG--------------------------------YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDI 220
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match:
ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCHY1 PE=1 SV=1)
HSP 1 Score: 62.7734 bits (151), Expect = 3.973e-9
Identity = 48/171 (28.07%), Postives = 64/171 (37.43%), Query Frame = 1
Query: 2677 FLCIGC--CYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMVSV 3183
F C+ C C ++ L+ H C+E +CPIC E H SR++ VLPCGH +H+ C EEM K Y CPLC S DM++ W +LD E+A TPMP Y+N V +
Sbjct: 117 FHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHT------------------SRVVAH-----------------VLPCGHLLHRTCYEEMLKEG--------------------------------YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDI 220
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match:
SRFP1_ORYSJ (E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1)
HSP 1 Score: 60.077 bits (144), Expect = 3.123e-8
Identity = 43/161 (26.71%), Postives = 62/161 (38.51%), Query Frame = 1
Query: 2689 GCCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNK 3171
G CYS+ L++ H C+E +M ++CPIC +YLF++ ++ VL CGHT+H C EM KH +++CP+CS I+DM K LD EI A + Y K
Sbjct: 125 GSCYSVSLRDKHCCIENSMKNNCPIC-----------------------------------YEYLFDSLRETSVLRCGHTMHLQCFHEMLKHD-------------------------------KFSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGK 219
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot )
Total hits: 6
500 1000 1500 2000 2500 3000 3500 Expect = 6.10e-7 / Id = 39.39 Expect = 6.14e-24 / Id = 39.39 Expect = 1.78e-7 / Id = 35.80 Expect = 1.96e-21 / Id = 35.80 Expect = 5.57e-17 / Id = 31.90 Expect = 1.51e-9 / Id = 28.07 Expect = 3.97e-9 / Id = 28.07 Expect = 3.12e-8 / Id = 26.71 Sequence ZFP34_ORYSJ ZFP34_ARATH MIEL1_ARATH ZN363_MOUSE ZN363_HUMAN SRFP1_ORYSJ
Match Name E-value Identity Description
ZFP34_ORYSJ 6.136e-24 39.39 Probable E3 ubiquitin-protein ligase RZFP34 OS=Ory... [more] ZFP34_ARATH 1.961e-21 35.80 E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis ... [more] MIEL1_ARATH 5.566e-17 31.90 E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis t... [more] ZN363_MOUSE 1.506e-9 28.07 RING finger and CHY zinc finger domain-containing ... [more] ZN363_HUMAN 3.973e-9 28.07 RING finger and CHY zinc finger domain-containing ... [more] SRFP1_ORYSJ 3.123e-8 26.71 E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa ... [more]
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350; organism=Lupinus angustifolius; type=mRNA; length=3774bp back to top protein sequence of rna-TanjilR_19350_La_Tanjil_v1.0
>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=309bp back to top mRNA from alignment at Chr_LG10-CM007370.1:14821373..14825146+
Legend: polypeptide exon CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350; organism=Lupinus angustifolius; type=mRNA; length=3774bp; location=Sequence derived from: Chr_LG10-CM007370.1:14821373..14825146+ (Lupinus angustifoliusATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTGGAGTGCTA
TGGCATGAACCATATGACTGAGAACGATGTTCATACTCCAAAATCGAATG
AACCCATGCCTGAAGAAGAATCAAATCAATCAACAGATGACATTAATATC
AATGACTTGCAAGAGAAAGGGTACATGGAGCATGg ATGTCAACATTACCGAAGAAGATGCCTGATCAG
GGCCCCCTGTTGCGATGAGATTTTTGATTGTCATCATTGTCACAATGAGG
CAAAA AATGATACCAACATCGATCAAA
AGCATAGGCACAACATTCCCCGCCATCAAGTCAAACAG GTGATATG
TTCACTTTGTGGGACTGAGCAAGAG GTTCAGAAAAACTGTATTAATTGTGGTGTTTGTATGGG
AAAATACTTCTGTGAGACATGCAAGCTCTTTGATGATGAT ATATCTAAACAGCAGTACCACTGCAGTGACT
GTGGAATTTGCAG AACTGGGGGAAGGGAGAATAATTTCCACTGCGATAAGTGTG GTTGTTGCTAT
TCAATTCTGCTGAAAAACAGTCACCCGTGCGTGGAACGAGCAATGCATCA
CGATTGCCCCATTTGTTGTGAG TATTTATTTGAAACAACAAAAGA
TATCCTTGTTCTGCCCTGTGGACATACCATCCACAAGTGTTGCTTGGAAG
AAATGAGAAAGCATTTACA ATATGCATGTCCTCTCTGCTCTAAGTCCATTTATGATA
TGTCCAAGGTTTGGGAGAAACTTGACCTGGAGATTGCTGCTACACCAATG
CCTCCACCATATCGGAATAAAATG GTTTCGATCCTGTGCAATGATTGTGGGAAATATTCTCACA
ATGTTCAATTCCATTTTGTGGGACATAAGTGCTTACACTGCAATTCCTAC
AACACAAGACAGACAAGTGGGTGA back to top Coding sequence (CDS) from alignment at Chr_LG10-CM007370.1:14821373..14825146+
>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350; organism=Lupinus angustifolius; type=CDS; length=930bp; location=Sequence derived from: Chr_LG10-CM007370.1:14821373..14825146+ (Lupinus angustifolius back to top
