rna-TanjilR_19350

Transcript Overview
Namerna-TanjilR_19350
Unique Namerna-TanjilR_19350_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length3774
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG10-CM007370.1supercontigChr_LG10-CM007370.1:14821373..14825146 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananR077Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR080Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR091Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR110Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaR0092Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0103Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaiR0121Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0138Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancrR0114Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0096Pisum sativum Cameor genome v1aPisum sativum
anpvR0103Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0156Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0116Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0124Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0113Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0108Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0093Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0100Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0095Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0104Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0108Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0115Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvssR0119Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0129Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0106Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0114Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ancanR0087Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0099Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0122Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0136Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0101Cicer arietinum
ancarR0109Cicer arietinum
anccaR0085Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0095Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0105Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0113Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0109Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0112Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0119Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0102Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0112Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0115Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0100Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0106Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0109Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0099Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0149Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0107Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0114Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata

Orthologs
Gene/TranscriptAssemblySpecies
rna-XM_004501211.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Vigan.02G088000.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
XM_058871038.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vum_02G00722.1Vigna umbellata FF25 genome v1.0Vigna umbellata
Phvul.009G099000.7Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
Psat6g031440.1Pisum sativum Cameor genome v1aPisum sativum
Ca_10947Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
Va04G062460.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Vigun09g203200.2Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Vfaba.Tiffany.R1.3g166520.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_014645480.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg35814.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
evm.model.Chr09.1671Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Vigst.02G067800.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Cc_v2.0_11200.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Psat06G0085700-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
Vigun09g203200.6Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Cc_v2.0_06896.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Phvul.001G056800.1Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
LR48_mrnaVigan04g211800Vigna angularis Jingnong 6 genome v1.1Vigna angularis
PvulFLAVERTChr09.699Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
rna-XM_004498558.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_01812Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
PvulFLAVERTChr01.350Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
Vfaba.Hedin2.R1.3g201720.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Cr_09676.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Ca_14743.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_19350gene-TanjilG_19350_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19350rna-TanjilR_19350_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_19350_La_Tanjil_v1.0rna-TanjilR_19350_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546Lupinus angustifoliusexon
rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146rna-TanjilR_19350_La_Tanjil_v1.0-exon-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821373..14821557Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14821640..14821727Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822401..14822460Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14822565..14822597Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823085..14823162Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823392..14823435Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14823878..14823918Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824062..14824144Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824250..14824341Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14824435..14824546Lupinus angustifoliusCDS
rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146rna-TanjilR_19350_La_Tanjil_v1.0-CDS-Chr_LG10-CM007370.1_La_Tanjil_v1.0-1579734366:14825033..14825146Lupinus angustifoliusCDS


Homology
[Close]
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match: ZFP34_ORYSJ (Probable E3 ubiquitin-protein ligase RZFP34 OS=Oryza sativa subsp. japonica OX=39947 GN=RZFP34 PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 6.136e-24
Identity = 65/165 (39.39%), Postives = 77/165 (46.67%), Query Frame = 1 
Query: 2689 GCCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMVSV 3183
            GCCYSI+LKNSH CVE AMHHDCPIC                                    +YLFE+T D+ VLPCGHTIH  CL EM +H                                ++ACPLCSKS+ DMSK WE+LD E+A   +     NKMV +
Sbjct:  175 GCCYSIVLKNSHACVEGAMHHDCPIC-----------------------------------FEYLFESTNDVSVLPCGHTIHVKCLREMEEH-------------------------------CQFACPLCSKSVCDMSKAWERLDEELA--TISDTCDNKMVRI 271

HSP 2 Score: 56.6102 bits (135), Expect = 6.104e-7
Identity = 27/37 (72.97%), Postives = 28/37 (75.68%), Query Frame = 2 
Query:  269 CQHYRRRCLIRAPCCDEIFDCHHCHNEAKVSKLPDLV 379
            C HYRRRC IRAPCC+EIFDC HCHNE K S   D V
Sbjct:   61 CAHYRRRCRIRAPCCNEIFDCRHCHNETKNSIKIDAV 97
[Close]
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match: ZFP34_ARATH (E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis thaliana OX=3702 GN=RZPF34 PE=1 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.961e-21
Identity = 58/162 (35.80%), Postives = 75/162 (46.30%), Query Frame = 1 
Query: 2692 CCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMV 3177
            CCYS ++++ H CVE AMHH+CP+C                                    +YLF++T+DI VL CGHT+H  C ++M  H                                RY CP+CSKSI DMS +W+KLD E+AA PMP  Y NKMV
Sbjct:  142 CCYSKIMEDKHQCVEGAMHHNCPVC-----------------------------------FEYLFDSTRDITVLRCGHTMHLECTKDMGLHN-------------------------------RYTCPVCSKSICDMSNLWKKLDEEVAAYPMPKMYENKMV 237

HSP 2 Score: 58.151 bits (139), Expect = 1.781e-7
Identity = 27/31 (87.10%), Postives = 27/31 (87.10%), Query Frame = 2 
Query:  269 CQHYRRRCLIRAPCCDEIFDCHHCHNEAKVS 361
            C HYRRRC IRAPCCDEIFDC HCHNEAK S
Sbjct:   27 CSHYRRRCKIRAPCCDEIFDCRHCHNEAKDS 57
[Close]
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match: MIEL1_ARATH (E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 5.566e-17
Identity = 52/163 (31.90%), Postives = 70/163 (42.94%), Query Frame = 1 
Query: 2689 GCCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMV 3177
            G CY++ L+N+H CVE +M H CPIC                                    +YLF++ KD  V+ CGHT+H  C  EM K                                 ++ CP+CS+S+ DMSK W++LD EI AT MP  YR+K V
Sbjct:  131 GSCYAVGLRNNHRCVENSMRHHCPIC-----------------------------------YEYLFDSLKDTNVMKCGHTMHVECYNEMIKRD-------------------------------KFCCPICSRSVIDMSKTWQRLDEEIEATAMPSDYRDKKV 227
[Close]
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus OX=10090 GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 1.506e-9
Identity = 48/171 (28.07%), Postives = 63/171 (36.84%), Query Frame = 1 
Query: 2677 FLCIGC--CYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMVSV 3183
            F C+ C  C +  L+  H C+E     +CPIC E  H                   SR++                   VLPCGH +H+ C EEM K                                  Y CPLC  S  DM++ W +LD E+A TPMP  Y+N  V +
Sbjct:  117 FHCLKCNLCLTTNLRGKHKCIENVSRQNCPICLEDIHT------------------SRVVAH-----------------VLPCGHLLHRTCYEEMLKEG--------------------------------YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDI 220
[Close]
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens OX=9606 GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 3.973e-9
Identity = 48/171 (28.07%), Postives = 64/171 (37.43%), Query Frame = 1 
Query: 2677 FLCIGC--CYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNKMVSV 3183
            F C+ C  C ++ L+  H C+E     +CPIC E  H                   SR++                   VLPCGH +H+ C EEM K                                  Y CPLC  S  DM++ W +LD E+A TPMP  Y+N  V +
Sbjct:  117 FHCLKCNLCLAMNLQGRHKCIENVSRQNCPICLEDIHT------------------SRVVAH-----------------VLPCGHLLHRTCYEEMLKEG--------------------------------YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDI 220
[Close]
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Match: SRFP1_ORYSJ (E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa subsp. japonica OX=39947 GN=SRFP1 PE=1 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 3.123e-8
Identity = 43/161 (26.71%), Postives = 62/161 (38.51%), Query Frame = 1 
Query: 2689 GCCYSILLKNSHPCVERAMHHDCPICCEVKHFTVFMI*MS*FLLTSLKNYSRLIQEHPNL*MQYLFETTKDILVLPCGHTIHKCCLEEMRKHXXXXXXXXXXXXXFPYI*SENCFDPCYV*IFIRYACPLCSKSIYDMSKVWEKLDLEIAATPMPPPYRNK 3171
            G CYS+ L++ H C+E +M ++CPIC                                    +YLF++ ++  VL CGHT+H  C  EM KH                                +++CP+CS  I+DM K    LD EI A  +   Y  K
Sbjct:  125 GSCYSVSLRDKHCCIENSMKNNCPIC-----------------------------------YEYLFDSLRETSVLRCGHTMHLQCFHEMLKHD-------------------------------KFSCPICSMPIFDMDKFLRALDAEIEANMLHIDYMGK 219
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19350 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 6
Match NameE-valueIdentityDescription
ZFP34_ORYSJ6.136e-2439.39Probable E3 ubiquitin-protein ligase RZFP34 OS=Ory... [more]
ZFP34_ARATH1.961e-2135.80E3 ubiquitin-protein ligase RZFP34 OS=Arabidopsis ... [more]
MIEL1_ARATH5.566e-1731.90E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis t... [more]
ZN363_MOUSE1.506e-928.07RING finger and CHY zinc finger domain-containing ... [more]
ZN363_HUMAN3.973e-928.07RING finger and CHY zinc finger domain-containing ... [more]
SRFP1_ORYSJ3.123e-826.71E3 ubiquitin-protein ligase SRFP1 OS=Oryza sativa ... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 199..241
e-value: 9.4E-6
score: 35.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 198..241
e-value: 1.2E-6
score: 28.8
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 199..242
score: 11.648
IPR008913Zinc finger, CHY-typePFAMPF05495zf-CHYcoord: 63..144
e-value: 4.5E-18
score: 65.5
IPR008913Zinc finger, CHY-typePROSITEPS51266ZF_CHYcoord: 56..132
score: 24.822
IPR039512RCHY1, zinc-ribbonPFAMPF14599zinc_ribbon_6coord: 247..305
e-value: 3.4E-27
score: 94.2
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 190..259
e-value: 5.7E-10
score: 40.4
NoneNo IPR availableGENE3D2.20.28.10coord: 270..309
e-value: 1.3E-16
score: 61.3
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 24..45
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 197..245
IPR017921Zinc finger, CTCHY-typePROSITEPS51270ZF_CTCHYcoord: 134..198
score: 34.138
IPR037274Zinc finger, CHY-type superfamilySUPERFAMILY161219CHY zinc finger-likecoord: 60..134
IPR037275Zinc finger, CTCHY-type superfamilySUPERFAMILY161245Zinc hairpin stackcoord: 135..192

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350; organism=Lupinus angustifolius; type=mRNA; length=3774bp
ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTGGAGTGCTA
TGGCATGAACCATATGACTGAGAACGATGTTCATACTCCAAAATCGAATG
AACCCATGCCTGAAGAAGAATCAAATCAATCAACAGATGACATTAATATC
AATGACTTGCAAGAGAAAGGGTACATGGAGCATGggtaattttttaatca
tatactCTTCCACTATGTTGATTGTTGTATCTCCTGCTCTTTTTTCTAAA
CGATAGGCTTTCTGTAGATGTCAACATTACCGAAGAAGATGCCTGATCAG
GGCCCCCTGTTGCGATGAGATTTTTGATTGTCATCATTGTCACAATGAGG
CAAAAGTGAGTAAACTCCCTGATCTAGTATTTGATTGTAATTGTATGTGT
CAAATATTTTATCTCTGGTTATTTACATTAATGATATGGTTCCAGCTTAT
TTCTTATCTGTAACCAATTTTCTTAGATTACATTTATCGTAGACAATACT
TATAGTAACATCAGAATAGTTTTTTATAATCTTAATTGGCTTTTACTTGT
CATGGCTTTCTGTTTGTGGTTTCCTCCATTTTCTTTACTCAGTTTCGAAG
TGATCTATCATGGAAAATGGAAGGTAAGGTTGTGCACTCTAATTTGAATA
GCTGACAATGAGTTGCCAAAATGGGatcataaacaattatcaattCATTC
AACATACTTCTGTTTAATTAGGTGAGAGGAGGGACTTCCAATCCTCCCAA
TTCTGGAAGGGAGCCAAAATTGAGAGATAAAAGGTCCTATCCCATCCAAA
ACGTTGAACCAAACaagaacttttttttattaaaaatcattCTCTCCCCG
TTGCTCCACTTCCCCAACCAAACAGACCCAAATAGGGCCTCTGTGTGCTC
CATCATGCCAGACTTTCTCACTTATGACTTTGAATGTAGCATGAAATTGC
CGCAttatgtgtaattcttgtattgtgGCTTTCCCTTTAGTTTTGTAAAC
TTATTATTGTTTTGATGTTTGTCTACAGAATGATACCAACATCGATCAAA
AGCATAGGCACAACATTCCCCGCCATCAAGTCAAACAGGTATTGTCATTT
ATGGAATACCCACATTTTTTGCACCtattttagttagttaattCATTCTC
AAGGAATTCCTTATTGCTAATGAAATAACTTGAATTCTTCAGGTGATATG
TTCACTTTGTGGGACTGAGCAAGAGGTGAGTCTAGATATATtctttaata
tatgtatttatgtttctGTTGTGGTTTACAAATTATACGGGACAATCTAA
ATACTACTTATTTCATGTTGGACACAGTCCTCCTATTCACTATCATAATC
ATGTATTATTTTTCAACCACTATCTACTTCgaaaatatatcaatattatt
tatcaaacGAGAAAAAAATTCGTTCTGCATGTGAGTGTATATGCATATTC
ACACGCTAAAGGACACAAAATTAAGGTGTAAAGTTTATCACCTTTTTAAG
GTTCGTCCTTATGTCTAGCCTAAACTGTTGGTAGTTTTGTGACTTTCGTC
TAAGATCTTGACTAGGCAGTATACCACTTGAAATTGCTGGGTTAGTcctg
tattattttattaaacaagTCATCCTAGAGCTGAAATTCATTATGTGCAA
CCCGCATTGAACATTTGAAGCTAAGTTTTTTTATGTGCTGATTTCTCTTG
CTTTCATTTCAGGTTCAGAAAAACTGTATTAATTGTGGTGTTTGTATGGG
AAAATACTTCTGTGAGACATGCAAGCTCTTTGATGATGATGTAAGTAGTT
ATCCTGGAACTGAGGAATTTTTTCTTGTCACATTTTATATATCTTCTATT
CTGtctttgataatatttttctatctgAAGTGAGTACAAACCGGTGTAGT
AAGTATCCTCTCTCAAATATAGCATGAAGATTAGTCatgtaataaaatga
ttatatgaaCTAGATAAGGAAGATTTCCATGTGGTATTGTGCTACTATCT
AATTTCTGTTGTTCTGCAGATATCTAAACAGCAGTACCACTGCAGTGACT
GTGGAATTTGCAGGTATGAACTGCTAATCTgattatttgtttgaaatatc
GATGTCGCCCCGCTTCATTTTAGGCCGGGGGCAGCACATCGTTGTGTTTG
GAACTGAGTGGTTAGTGAAATTTTTTCCttagattttaaaaataaattga
ttattttaatttttctattatgAAATCAAAGTTTAGTTTAGCCtacttat
ataataataatttatttattggcATCCTAACTAAAGTAGTCTAGCTCCAT
CTGATATGGGGGAATTTTGTGAAAGTGGGAAAGCAATGTATGTCCTTTTT
CAAGGTTCAGGAGATCATGCTTCTTATACGTTTCTGTTTTATGCACTCGA
CTTTAATGTCACATTTGTATTAAGTATATATTGCATCTTGCTTTTAGATT
GACTATTCTTTCTACTGAAATTCAGACTGATTGATTCTGATATTTTTTAA
TGCAGAACTGGGGGAAGGGAGAATAATTTCCACTGCGATAAGTGTGGTAA
GTAATTAGTTTTCATTCCCATGTTTTTTCTTGGTACAATACATCATGCCT
TTTAGTAAGTGCTTAGTAGCACATAACAATGTCATTATTATAAAATGGAC
TAcctgtttgatcattacattcaTGATTTCTTTGCATAGGTTGTTGCTAT
TCAATTCTGCTGAAAAACAGTCACCCGTGCGTGGAACGAGCAATGCATCA
CGATTGCCCCATTTGTTGTGAGGTAAAACATTTTACAGTTTTCATGATTT
AAATGTCATGATTCCTTCTTACCAGTTTGAAGAATTACTCAAGGCTGATT
CAAGAACACCCAAATTTGTAAATGCAGTATTTATTTGAAACAACAAAAGA
TATCCTTGTTCTGCCCTGTGGACATACCATCCACAAGTGTTGCTTGGAAG
AAATGAGAAAGCATTTACAGTGAGTGTCCCAAAGCTCCTCTACTCTTCTT
ACTTTTCCATATATCTAATCTGAAAATTGTTTTGACCCTTGTTATGTTTA
AATCTTCATCAGATATGCATGTCCTCTCTGCTCTAAGTCCATTTATGATA
TGTCCAAGGTTTGGGAGAAACTTGACCTGGAGATTGCTGCTACACCAATG
CCTCCACCATATCGGAATAAAATGGTCAGTGTTCCTTTTCCCTCATTGAT
GATTGTGTATTCTATGTTCAATGTAGTGATTCAATTTGCGGACAAACATC
ACGTGAAGCAAACACAATAATGCAGTTGTGGTGACCGTCGCAACTGCATC
ACATCACAATTTGCATTGTGACCCCAAACCACAATGACGTGGTTGCAGCC
CAACTGCATCAGACCGCATTTGGGCCGCATCAGACTGCACTTGGACTGCA
TCAGACTATTTTGGGCCACATCAGACCGTATTTGGGCCGACTGCATTTGG
GCTGCATCACATTGTTTCGGACTGCATTAGGCTGCATCGGAccttattat
attaaataatattctttAATCACAAAATGATTCTACAATAGCAATGCACA
TGacagtaatttgtattatgacttttttgttgctttgtctgtgatttttt
tgttacatgCTAAATCCAGTAGAAAGTTACCTACTGATTATGGGGACTTA
CTATGTACAGGTTTCGATCCTGTGCAATGATTGTGGGAAATATTCTCACA
ATGTTCAATTCCATTTTGTGGGACATAAGTGCTTACACTGCAATTCCTAC
AACACAAGACAGACAAGTGGGTGA
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protein sequence of rna-TanjilR_19350_La_Tanjil_v1.0

>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=309bp
MGEVAVMHSEPLQLECYGMNHMTENDVHTPKSNEPMPEEESNQSTDDINI
NDLQEKGYMEHGCQHYRRRCLIRAPCCDEIFDCHHCHNEAKNDTNIDQKH
RHNIPRHQVKQVICSLCGTEQEVQKNCINCGVCMGKYFCETCKLFDDDIS
KQQYHCSDCGICRTGGRENNFHCDKCGCCYSILLKNSHPCVERAMHHDCP
ICCEYLFETTKDILVLPCGHTIHKCCLEEMRKHLQYACPLCSKSIYDMSK
VWEKLDLEIAATPMPPPYRNKMVSILCNDCGKYSHNVQFHFVGHKCLHCN
SYNTRQTSG
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mRNA from alignment at Chr_LG10-CM007370.1:14821373..14825146+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350; organism=Lupinus angustifolius; type=mRNA; length=3774bp; location=Sequence derived from: Chr_LG10-CM007370.1:14821373..14825146+ (Lupinus angustifolius
ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTGGAGTGCTA
TGGCATGAACCATATGACTGAGAACGATGTTCATACTCCAAAATCGAATG
AACCCATGCCTGAAGAAGAATCAAATCAATCAACAGATGACATTAATATC
AATGACTTGCAAGAGAAAGGGTACATGGAGCATGggtaattttttaatca
tatactCTTCCACTATGTTGATTGTTGTATCTCCTGCTCTTTTTTCTAAA
CGATAGGCTTTCTGTAGATGTCAACATTACCGAAGAAGATGCCTGATCAG
GGCCCCCTGTTGCGATGAGATTTTTGATTGTCATCATTGTCACAATGAGG
CAAAAGTGAGTAAACTCCCTGATCTAGTATTTGATTGTAATTGTATGTGT
CAAATATTTTATCTCTGGTTATTTACATTAATGATATGGTTCCAGCTTAT
TTCTTATCTGTAACCAATTTTCTTAGATTACATTTATCGTAGACAATACT
TATAGTAACATCAGAATAGTTTTTTATAATCTTAATTGGCTTTTACTTGT
CATGGCTTTCTGTTTGTGGTTTCCTCCATTTTCTTTACTCAGTTTCGAAG
TGATCTATCATGGAAAATGGAAGGTAAGGTTGTGCACTCTAATTTGAATA
GCTGACAATGAGTTGCCAAAATGGGatcataaacaattatcaattCATTC
AACATACTTCTGTTTAATTAGGTGAGAGGAGGGACTTCCAATCCTCCCAA
TTCTGGAAGGGAGCCAAAATTGAGAGATAAAAGGTCCTATCCCATCCAAA
ACGTTGAACCAAACaagaacttttttttattaaaaatcattCTCTCCCCG
TTGCTCCACTTCCCCAACCAAACAGACCCAAATAGGGCCTCTGTGTGCTC
CATCATGCCAGACTTTCTCACTTATGACTTTGAATGTAGCATGAAATTGC
CGCAttatgtgtaattcttgtattgtgGCTTTCCCTTTAGTTTTGTAAAC
TTATTATTGTTTTGATGTTTGTCTACAGAATGATACCAACATCGATCAAA
AGCATAGGCACAACATTCCCCGCCATCAAGTCAAACAGGTATTGTCATTT
ATGGAATACCCACATTTTTTGCACCtattttagttagttaattCATTCTC
AAGGAATTCCTTATTGCTAATGAAATAACTTGAATTCTTCAGGTGATATG
TTCACTTTGTGGGACTGAGCAAGAGGTGAGTCTAGATATATtctttaata
tatgtatttatgtttctGTTGTGGTTTACAAATTATACGGGACAATCTAA
ATACTACTTATTTCATGTTGGACACAGTCCTCCTATTCACTATCATAATC
ATGTATTATTTTTCAACCACTATCTACTTCgaaaatatatcaatattatt
tatcaaacGAGAAAAAAATTCGTTCTGCATGTGAGTGTATATGCATATTC
ACACGCTAAAGGACACAAAATTAAGGTGTAAAGTTTATCACCTTTTTAAG
GTTCGTCCTTATGTCTAGCCTAAACTGTTGGTAGTTTTGTGACTTTCGTC
TAAGATCTTGACTAGGCAGTATACCACTTGAAATTGCTGGGTTAGTcctg
tattattttattaaacaagTCATCCTAGAGCTGAAATTCATTATGTGCAA
CCCGCATTGAACATTTGAAGCTAAGTTTTTTTATGTGCTGATTTCTCTTG
CTTTCATTTCAGGTTCAGAAAAACTGTATTAATTGTGGTGTTTGTATGGG
AAAATACTTCTGTGAGACATGCAAGCTCTTTGATGATGATGTAAGTAGTT
ATCCTGGAACTGAGGAATTTTTTCTTGTCACATTTTATATATCTTCTATT
CTGtctttgataatatttttctatctgAAGTGAGTACAAACCGGTGTAGT
AAGTATCCTCTCTCAAATATAGCATGAAGATTAGTCatgtaataaaatga
ttatatgaaCTAGATAAGGAAGATTTCCATGTGGTATTGTGCTACTATCT
AATTTCTGTTGTTCTGCAGATATCTAAACAGCAGTACCACTGCAGTGACT
GTGGAATTTGCAGGTATGAACTGCTAATCTgattatttgtttgaaatatc
GATGTCGCCCCGCTTCATTTTAGGCCGGGGGCAGCACATCGTTGTGTTTG
GAACTGAGTGGTTAGTGAAATTTTTTCCttagattttaaaaataaattga
ttattttaatttttctattatgAAATCAAAGTTTAGTTTAGCCtacttat
ataataataatttatttattggcATCCTAACTAAAGTAGTCTAGCTCCAT
CTGATATGGGGGAATTTTGTGAAAGTGGGAAAGCAATGTATGTCCTTTTT
CAAGGTTCAGGAGATCATGCTTCTTATACGTTTCTGTTTTATGCACTCGA
CTTTAATGTCACATTTGTATTAAGTATATATTGCATCTTGCTTTTAGATT
GACTATTCTTTCTACTGAAATTCAGACTGATTGATTCTGATATTTTTTAA
TGCAGAACTGGGGGAAGGGAGAATAATTTCCACTGCGATAAGTGTGGTAA
GTAATTAGTTTTCATTCCCATGTTTTTTCTTGGTACAATACATCATGCCT
TTTAGTAAGTGCTTAGTAGCACATAACAATGTCATTATTATAAAATGGAC
TAcctgtttgatcattacattcaTGATTTCTTTGCATAGGTTGTTGCTAT
TCAATTCTGCTGAAAAACAGTCACCCGTGCGTGGAACGAGCAATGCATCA
CGATTGCCCCATTTGTTGTGAGGTAAAACATTTTACAGTTTTCATGATTT
AAATGTCATGATTCCTTCTTACCAGTTTGAAGAATTACTCAAGGCTGATT
CAAGAACACCCAAATTTGTAAATGCAGTATTTATTTGAAACAACAAAAGA
TATCCTTGTTCTGCCCTGTGGACATACCATCCACAAGTGTTGCTTGGAAG
AAATGAGAAAGCATTTACAGTGAGTGTCCCAAAGCTCCTCTACTCTTCTT
ACTTTTCCATATATCTAATCTGAAAATTGTTTTGACCCTTGTTATGTTTA
AATCTTCATCAGATATGCATGTCCTCTCTGCTCTAAGTCCATTTATGATA
TGTCCAAGGTTTGGGAGAAACTTGACCTGGAGATTGCTGCTACACCAATG
CCTCCACCATATCGGAATAAAATGGTCAGTGTTCCTTTTCCCTCATTGAT
GATTGTGTATTCTATGTTCAATGTAGTGATTCAATTTGCGGACAAACATC
ACGTGAAGCAAACACAATAATGCAGTTGTGGTGACCGTCGCAACTGCATC
ACATCACAATTTGCATTGTGACCCCAAACCACAATGACGTGGTTGCAGCC
CAACTGCATCAGACCGCATTTGGGCCGCATCAGACTGCACTTGGACTGCA
TCAGACTATTTTGGGCCACATCAGACCGTATTTGGGCCGACTGCATTTGG
GCTGCATCACATTGTTTCGGACTGCATTAGGCTGCATCGGAccttattat
attaaataatattctttAATCACAAAATGATTCTACAATAGCAATGCACA
TGacagtaatttgtattatgacttttttgttgctttgtctgtgatttttt
tgttacatgCTAAATCCAGTAGAAAGTTACCTACTGATTATGGGGACTTA
CTATGTACAGGTTTCGATCCTGTGCAATGATTGTGGGAAATATTCTCACA
ATGTTCAATTCCATTTTGTGGGACATAAGTGCTTACACTGCAATTCCTAC
AACACAAGACAGACAAGTGGGTGA
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Coding sequence (CDS) from alignment at Chr_LG10-CM007370.1:14821373..14825146+

>rna-TanjilR_19350_La_Tanjil_v1.0 ID=rna-TanjilR_19350_La_Tanjil_v1.0; Name=rna-TanjilR_19350; organism=Lupinus angustifolius; type=CDS; length=930bp; location=Sequence derived from: Chr_LG10-CM007370.1:14821373..14825146+ (Lupinus angustifolius
ATGGGAGAGGTGGCAGTAATGCACTCTGAGCCTCTGCAGTTGGAGTGCTA
TGGCATGAACCATATGACTGAGAACGATGTTCATACTCCAAAATCGAATG
AACCCATGCCTGAAGAAGAATCAAATCAATCAACAGATGACATTAATATC
AATGACTTGCAAGAGAAAGGGTACATGGAGCATGgATGTCAACATTACCG
AAGAAGATGCCTGATCAGGGCCCCCTGTTGCGATGAGATTTTTGATTGTC
ATCATTGTCACAATGAGGCAAAAAATGATACCAACATCGATCAAAAGCAT
AGGCACAACATTCCCCGCCATCAAGTCAAACAGGTGATATGTTCACTTTG
TGGGACTGAGCAAGAGGTTCAGAAAAACTGTATTAATTGTGGTGTTTGTA
TGGGAAAATACTTCTGTGAGACATGCAAGCTCTTTGATGATGATATATCT
AAACAGCAGTACCACTGCAGTGACTGTGGAATTTGCAGAACTGGGGGAAG
GGAGAATAATTTCCACTGCGATAAGTGTGGTTGTTGCTATTCAATTCTGC
TGAAAAACAGTCACCCGTGCGTGGAACGAGCAATGCATCACGATTGCCCC
ATTTGTTGTGAGTATTTATTTGAAACAACAAAAGATATCCTTGTTCTGCC
CTGTGGACATACCATCCACAAGTGTTGCTTGGAAGAAATGAGAAAGCATT
TACAATATGCATGTCCTCTCTGCTCTAAGTCCATTTATGATATGTCCAAG
GTTTGGGAGAAACTTGACCTGGAGATTGCTGCTACACCAATGCCTCCACC
ATATCGGAATAAAATGGTTTCGATCCTGTGCAATGATTGTGGGAAATATT
CTCACAATGTTCAATTCCATTTTGTGGGACATAAGTGCTTACACTGCAAT
TCCTACAACACAAGACAGACAAGTGGGTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR008913Znf_CHY
IPR039512RCHY1_zinc-ribbon
IPR013083Znf_RING/FYVE/PHD
IPR017921Znf_CTCHY
IPR037274Znf_CHY_sf
IPR037275Znf_CTCHY_sf
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding