rna-TanjilR_06529
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MY102_ARATH (Transcription factor MYB102 OS=Arabidopsis thaliana OX=3702 GN=MYB102 PE=2 SV=1) HSP 1 Score: 110.538 bits (275), Expect = 5.382e-45 Identity = 99/267 (37.08%), Postives = 137/267 (51.31%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPRLDLLNMSSILRT---------MXXXXXXXXXXXXIGAQ-ALMNPELLNLVATASLLASQNNPQQLQYNGNCQTQNQEFSQFQTPTQSNNVGGFMGNLRCSSSLQNSIPTYLDE-----------NIVLQQNQVEELLGN-------------------DQVLVHQSVNNANKIIGYDXXXXXXXXXXXXXXXXXXXXXXXXXRDSYCSELFNFEIPENLDISDFL 1360
+WSAIA RLPGRTDNEIKN+WNTHI+K+LLR GIDPVTH+PRLDLL++SSIL + M + +++ Q L+NPE+L L A+ L SQN Q L + + +TQ ++ QT + N + LQ+S+P + +E N +QN V + D QS N AN ++ S SP LN+S S ST +E +SYCS L F+IP+ LD++ F+
Sbjct: 88 KWSAIAARLPGRTDNEIKNFWNTHIRKKLLRMGIDPVTHSPRLDLLDISSILASSLYNSSSHHMNMSRLMMDTNRRHHQQHPLVNPEILKL---ATSLFSQNQNQNLVVDHDSRTQEKQTVYSQTGVNQYQTNQYFENT-ITQELQSSMPPFPNEARQFNNMDHHFNGFGEQNLVSTSTTSVQDCYNPSFNDYSSSNFVLDPSYSDQSFNFANSVLNTPSSSPSPTTLNSSYINSSSCSTEDEI-ESYCSNLMKFDIPDFLDVNGFI 349 HSP 2 Score: 93.5893 bits (231), Expect = 5.382e-45 Identity = 41/45 (91.11%), Postives = 43/45 (95.56%), Query Frame = 3
Query: 462 GLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
GLQRCGKSCRLRW NYLRPDIKRGRFSFEEEETIIQLHS +GNK+
Sbjct: 45 GLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSFLGNKW 89 HSP 3 Score: 72.4034 bits (176), Expect = 1.184e-12 Identity = 33/46 (71.74%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R PCCEKN GLKKGPWT EED KL+++IQ HG G WR LPK AG
Sbjct: 1 MARSPCCEKN-GLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPKNAG 45
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB74_ARATH (Transcription factor MYB74 OS=Arabidopsis thaliana OX=3702 GN=MYB74 PE=2 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 8.132e-40 Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 3
Query: 462 GLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
GLQRCGKSCRLRW NYLRPDIKRGRFSFEEEETIIQLHS+MGNK+
Sbjct: 46 GLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSIMGNKW 90 HSP 2 Score: 90.8929 bits (224), Expect = 8.132e-40 Identity = 59/141 (41.84%), Postives = 73/141 (51.77%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPR-------------------------LDLLNMSSILRTMXXXXXXXXXXXXIGAQALMNPELLNLVATASLLASQNNPQQLQYNGNCQTQNQ-EFSQFQT 1024
+WSAIA RLPGRTDNEIKNYWNTHI+KRLL+ GIDPVTH PR +NMS ++ + Q L+NPE+L L SL ++QN+P N T NQ E +Q+QT
Sbjct: 89 KWSAIAARLPGRTDNEIKNYWNTHIRKRLLKMGIDPVTHTPRLDLLDISSILSSSIYNSSHHHHHHHQQHMNMSRLMMS------------DGNHQPLVNPEILKLA--TSLFSNQNHPNNTHENN---TVNQTEVNQYQT 212 HSP 3 Score: 73.9442 bits (180), Expect = 3.558e-13 Identity = 34/46 (73.91%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R PCCEK NGLKKGPWTPEED KLI++I HG G WR LPK AG
Sbjct: 1 MGRSPCCEKKNGLKKGPWTPEEDQKLIDYINIHGYGNWRTLPKNAG 46
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB41_ARATH (Transcription factor MYB41 OS=Arabidopsis thaliana OX=3702 GN=MYB41 PE=1 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 9.813e-39 Identity = 42/45 (93.33%), Postives = 43/45 (95.56%), Query Frame = 3
Query: 462 GLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
GL RCGKSCRLRW NYLRPDIKRGRFSFEEEETIIQLHSVMGNK+
Sbjct: 45 GLHRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSVMGNKW 89 HSP 2 Score: 87.4261 bits (215), Expect = 9.813e-39 Identity = 36/42 (85.71%), Postives = 41/42 (97.62%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPR 805
+WSAIA RLPGRTDNEIKN+WNTHI+KRL+RSGIDPVTH+PR
Sbjct: 88 KWSAIAARLPGRTDNEIKNHWNTHIRKRLVRSGIDPVTHSPR 129 HSP 3 Score: 68.9366 bits (167), Expect = 1.103e-11 Identity = 32/46 (69.57%), Postives = 37/46 (80.43%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R PCC+KN G+KKGPWT EED KLI++I+ HGPG WR LPK AG
Sbjct: 1 MGRSPCCDKN-GVKKGPWTAEEDQKLIDYIRFHGPGNWRTLPKNAG 45
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB92_ARATH (Transcription factor MYB92 OS=Arabidopsis thaliana OX=3702 GN=MYB92 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.547e-33 Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 3
Query: 456 VTGLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
+ GL RCGKSCRLRW NYLRPDIKRGRFS +EE+TI+ LHSV+GNK+
Sbjct: 43 LAGLNRCGKSCRLRWTNYLRPDIKRGRFSPDEEQTILNLHSVLGNKW 89 HSP 2 Score: 78.9518 bits (193), Expect = 1.547e-33 Identity = 32/55 (58.18%), Postives = 44/55 (80.00%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPRLDLLNMSSILRTM 844
+WS IA +LPGRTDNEIKN+WNTH+KK+L++ G DP+TH PR D+ + S L ++
Sbjct: 88 KWSTIANQLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHRPRTDIFSGLSQLMSL 142 HSP 3 Score: 62.003 bits (149), Expect = 3.085e-9 Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R P + ++GLKKGPWTP+ED KL+N++Q HG WR LPK+AG
Sbjct: 1 MGRSPISD-DSGLKKGPWTPDEDEKLVNYVQKHGHSSWRALPKLAG 45
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB93_ARATH (Transcription factor MYB93 OS=Arabidopsis thaliana OX=3702 GN=MYB93 PE=1 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.837e-33 Identity = 34/47 (72.34%), Postives = 41/47 (87.23%), Query Frame = 3
Query: 456 VTGLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
+ L RCGKSCRLRW NYLRPDIKRG+FS EEE+TI+ LHS++GNK+
Sbjct: 43 LADLNRCGKSCRLRWTNYLRPDIKRGKFSAEEEQTILHLHSILGNKW 89 HSP 2 Score: 82.0333 bits (201), Expect = 1.837e-33 Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPRLDLL 817
+WSAIAT L GRTDNEIKN+WNTH+KK+L++ GIDPVTH PR DL
Sbjct: 88 KWSAIATHLQGRTDNEIKNFWNTHLKKKLIQMGIDPVTHQPRTDLF 133 HSP 3 Score: 68.1662 bits (165), Expect = 3.808e-11 Identity = 31/45 (68.89%), Postives = 36/45 (80.00%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIA 135
M R PCC++N GLKKGPWTPEED KLI++I HG G WR LPK+A
Sbjct: 1 MGRSPCCDEN-GLKKGPWTPEEDQKLIDYIHKHGHGSWRALPKLA 44
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB16_ARATH (Transcription factor MYB16 OS=Arabidopsis thaliana OX=3702 GN=MYB16 PE=2 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.539e-33 Identity = 33/45 (73.33%), Postives = 42/45 (93.33%), Query Frame = 3
Query: 462 GLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
GL RCGKSCRLRW NYLRPDIKRG+F+ +EE+TIIQLH+++GN++
Sbjct: 45 GLHRCGKSCRLRWTNYLRPDIKRGKFNLQEEQTIIQLHALLGNRW 89 HSP 2 Score: 82.4185 bits (202), Expect = 2.539e-33 Identity = 34/42 (80.95%), Postives = 38/42 (90.48%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPR 805
RWSAIAT LP RTDNEIKNYWNTH+KKRL++ GIDPVTH P+
Sbjct: 88 RWSAIATHLPKRTDNEIKNYWNTHLKKRLVKMGIDPVTHKPK 129 HSP 3 Score: 64.6994 bits (156), Expect = 3.819e-10 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R PCC+K GLKKGPWTPEED KL+ +I+ HG G WR+LP+ AG
Sbjct: 1 MGRSPCCDKL-GLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG 45
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MY106_ARATH (Transcription factor MYB106 OS=Arabidopsis thaliana OX=3702 GN=MYB106 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 2.622e-33 Identity = 34/48 (70.83%), Postives = 44/48 (91.67%), Query Frame = 3
Query: 462 GLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKYVPL 605
GLQRCGKSCRLRW NYLRPDIKRG+F+ +EE+TIIQLH+++GN++ +
Sbjct: 45 GLQRCGKSCRLRWTNYLRPDIKRGKFTVQEEQTIIQLHALLGNRWSAI 92 HSP 2 Score: 80.1073 bits (196), Expect = 2.622e-33 Identity = 35/50 (70.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPRLDLLNMSS 829
RWSAIAT LP RTDNEIKNYWNTH+KKRL++ GIDPVTH + + L+ S+
Sbjct: 88 RWSAIATHLPKRTDNEIKNYWNTHLKKRLIKMGIDPVTHKHKNETLSSST 137 HSP 3 Score: 65.4698 bits (158), Expect = 2.690e-10 Identity = 30/46 (65.22%), Postives = 36/46 (78.26%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R PCC+K GLKKGPWTPEED KL+ +I+ HG G WR+LP+ AG
Sbjct: 1 MGRSPCCDKA-GLKKGPWTPEEDQKLLAYIEEHGHGSWRSLPEKAG 45
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB53_ARATH (Transcription factor MYB53 OS=Arabidopsis thaliana OX=3702 GN=MYB53 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 3.872e-33 Identity = 36/47 (76.60%), Postives = 42/47 (89.36%), Query Frame = 3
Query: 456 VTGLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
+ GL RCGKSCRLRW NYLRPDIKRG+FS EEEETI+ LH+V+GNK+
Sbjct: 43 LAGLNRCGKSCRLRWTNYLRPDIKRGKFSAEEEETILNLHAVLGNKW 89 HSP 2 Score: 77.411 bits (189), Expect = 3.872e-33 Identity = 30/44 (68.18%), Postives = 38/44 (86.36%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPRLD 811
+WS IA+ LPGRTDNEIKN+WNTH+KK+L++ G DP+TH PR D
Sbjct: 88 KWSMIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTD 131 HSP 3 Score: 56.6102 bits (135), Expect = 1.481e-7 Identity = 27/46 (58.70%), Postives = 31/46 (67.39%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R P ++ GLKKGPW PEED KLIN+I HG W LPK+AG
Sbjct: 1 MGRSPSSDET-GLKKGPWLPEEDDKLINYIHKHGHSSWSALPKLAG 45
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB32_ARATH (Transcription factor MYB32 OS=Arabidopsis thaliana OX=3702 GN=MYB32 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.497e-32 Identity = 33/41 (80.49%), Postives = 37/41 (90.24%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAP 802
+WS IATRLPGRTDNEIKNYWNTH+K++LLR GIDP TH P
Sbjct: 88 KWSLIATRLPGRTDNEIKNYWNTHVKRKLLRKGIDPATHRP 128 HSP 2 Score: 79.337 bits (194), Expect = 3.497e-32 Identity = 33/46 (71.74%), Postives = 41/46 (89.13%), Query Frame = 3
Query: 459 TGLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
GLQRCGKSCRLRW NYLRPD+KRG F+ EE++ II+LHS++GNK+
Sbjct: 44 AGLQRCGKSCRLRWINYLRPDLKRGNFTLEEDDLIIKLHSLLGNKW 89 HSP 3 Score: 56.6102 bits (135), Expect = 1.219e-7 Identity = 27/46 (58.70%), Postives = 34/46 (73.91%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R PCCEK++ KG WT EED KLI++I+ HG G WR+LP+ AG
Sbjct: 1 MGRSPCCEKDH-TNKGAWTKEEDDKLISYIKAHGEGCWRSLPRSAG 45
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana OX=3702 GN=MYB39 PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 4.138e-31 Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 2
Query: 680 RWSAIATRLPGRTDNEIKNYWNTHIKKRLLRSGIDPVTHAPRLDLLNMSSIL 835
+WS IA LPGRTDNEIKNYWNTH++K+LL+ GIDPVTH PR + ++S IL
Sbjct: 89 KWSKIAGHLPGRTDNEIKNYWNTHMRKKLLQMGIDPVTHEPRTN--DLSPIL 138 HSP 2 Score: 78.5666 bits (192), Expect = 4.138e-31 Identity = 32/47 (68.09%), Postives = 41/47 (87.23%), Query Frame = 3
Query: 456 VTGLQRCGKSCRLRWANYLRPDIKRGRFSFEEEETIIQLHSVMGNKY 596
+ GL RCGKSCRLRW NYLRPDI+RG+FS EE TI++LH+++GNK+
Sbjct: 44 LAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKW 90 HSP 3 Score: 63.929 bits (154), Expect = 9.340e-10 Identity = 27/46 (58.70%), Postives = 35/46 (76.09%), Query Frame = 1
Query: 1 MVRVPCCEKNNGLKKGPWTPEEDVKLINHIQNHGPGKWRNLPKIAG 138
M R PCC+++ G+KKGPW PEED KL +I +G G WR+LPK+AG
Sbjct: 1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAG 46 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06529 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_06529_La_Tanjil_v1.0 ID=rna-TanjilR_06529_La_Tanjil_v1.0; Name=rna-TanjilR_06529; organism=Lupinus angustifolius; type=mRNA; length=1363bpback to top protein sequence of rna-TanjilR_06529_La_Tanjil_v1.0 >rna-TanjilR_06529_La_Tanjil_v1.0 ID=rna-TanjilR_06529_La_Tanjil_v1.0; Name=rna-TanjilR_06529_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=315bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3620846..3622208+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_06529_La_Tanjil_v1.0 ID=rna-TanjilR_06529_La_Tanjil_v1.0; Name=rna-TanjilR_06529; organism=Lupinus angustifolius; type=mRNA; length=1363bp; location=Sequence derived from: Chr_LG13-CM007373.1:3620846..3622208+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3620846..3622208+ >rna-TanjilR_06529_La_Tanjil_v1.0 ID=rna-TanjilR_06529_La_Tanjil_v1.0; Name=rna-TanjilR_06529; organism=Lupinus angustifolius; type=CDS; length=948bp; location=Sequence derived from: Chr_LG13-CM007373.1:3620846..3622208+ (Lupinus angustifoliusback to top |