Transcript Overview
| Name | rna-TanjilR_06514 |
|---|
| Unique Name | rna-TanjilR_06514_La_Tanjil_v1.0 |
|---|
| Type | mRNA |
|---|
| Organism | Lupinus angustifolius (blue lupin) |
|---|
| Sequence length | 2924 |
|---|
| Product | hypothetical protein |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_06514 | rna-TanjilR_06514_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_06514_La_Tanjil_v1.0 | rna-TanjilR_06514_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747606..3747950 | rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747606..3747950 | Lupinus angustifolius | CDS |
| rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747304..3747424 | rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747304..3747424 | Lupinus angustifolius | CDS |
| rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747101..3747197 | rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747101..3747197 | Lupinus angustifolius | CDS |
| rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746952..3746991 | rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746952..3746991 | Lupinus angustifolius | CDS |
| rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746733..3746816 | rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746733..3746816 | Lupinus angustifolius | CDS |
| rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3745027..3745191 | rna-TanjilR_06514_La_Tanjil_v1.0-CDS-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3745027..3745191 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747606..3747950 | rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747606..3747950 | Lupinus angustifolius | exon |
| rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747304..3747424 | rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747304..3747424 | Lupinus angustifolius | exon |
| rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747101..3747197 | rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3747101..3747197 | Lupinus angustifolius | exon |
| rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746952..3746991 | rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746952..3746991 | Lupinus angustifolius | exon |
| rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746733..3746816 | rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3746733..3746816 | Lupinus angustifolius | exon |
| rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3745027..3745191 | rna-TanjilR_06514_La_Tanjil_v1.0-exon-Chr_LG13-CM007373.1_La_Tanjil_v1.0-1579734366:3745027..3745191 | Lupinus angustifolius | exon |
Homology
BLAST of rna-TanjilR_06514 vs. DB:Swiss
Match: SPG1_SCHPO (Septum-promoting GTP-binding protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spg1 PE=1 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 7.286e-10 Identity = 28/56 (50.00%), Postives = 41/56 (73.21%), Query Frame = 3 Query: 2754 EQARAYAKALNATLFFSSATYNINVNKIFKFITAKLFDLPWTVERNLTVGEPIIDF 2921
+QAR YAKA+ A+L F S +++INV KIFK + AK+FDL T+ VG+PI+++
Sbjct: 140 KQARRYAKAMKASLVFCSTSHSINVQKIFKIVLAKVFDLKCTIPEIKNVGDPILEY 195
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | PRINTS | PR00449 | RASTRNSFRMNG | coord: 99..120
score: 32.91
coord: 241..263
score: 25.39
coord: 140..162
score: 17.41
coord: 201..214
score: 32.06 |
| None | No IPR available | SMART | SM00174 | rho_sub_3 | coord: 101..265
e-value: 0.002
score: -73.2 |
| None | No IPR available | SMART | SM00175 | rab_sub_5 | coord: 99..266
e-value: 2.1E-5
score: -42.3 |
| None | No IPR available | GENE3D | 3.40.50.300 | | coord: 89..265
e-value: 2.9E-25
score: 90.6 |
| None | No IPR available | PROSITE | PS51419 | RAB | coord: 93..283
score: 10.825 |
| IPR001806 | Small GTPase | PFAM | PF00071 | Ras | coord: 100..263
e-value: 7.2E-19
score: 68.0 |
| IPR027417 | P-loop containing nucleoside triphosphate hydrolase | SUPERFAMILY | 52540 | P-loop containing nucleoside triphosphate hydrolases | coord: 99..274 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_06514_La_Tanjil_v1.0 ID=rna-TanjilR_06514_La_Tanjil_v1.0; Name=rna-TanjilR_06514; organism=Lupinus angustifolius; type=mRNA; length=2924bp
ATGTCCCAGTTTTGCCGTGAAGTTAGTCATTCCACCACCCTGCGGTGGCG
GTTTAAGCACCGTGTCTCGGTGCTACGGCGATCCCTCCTCCGCTTCCTCC
ACAGCATTATGATTTGCTCTGGAAGGAAGCATACTAATTCAACGTACCGC
ATGCTGCAGTCGCATGCAGCATTGCCTTCTCCGCCGCCGCAGCCGCCGAT
AGATTTCTCCGACGAGGCTAGCCTTGAAGCGTTGCCGGTGGCCTTGCCAC
CTCCACTGTTTAATACCCATGATTTGGATTCTGATTTGGTTTCCTTGAAG
ATCACTTTGTTGGGTGATTGTCAAATTGGAAAAACCAGCTTTTTGGTAAG
TTTGTCACTTTATCAATAAACAATCATATTTTTTTCCTTTTTAAAATGCA
GTTTCTGTTTGGAGACATTTTAAATAATTAACTTATGGGTTGAGTTGAAT
TTGATATGGGTTGTGTTGATATTTTTTTAATTAATTTAATATTATCATTT
TTTTATTTTCCACGTTTTGTTTGCAGGTGAAATATGTTGGGGATGTAAAA
GATCAGCAAGGGAGACAAGGTAAAGGGCCAAACCAAATGGACAAGATTTT
GGATGTAAGAGGAGCACGAATATCCTATTGTATTTGGGAGGTACAAGGTA
TAATGTAGAAGAACTCAATGTATTTGATGATTTTGGGATTAAGATCTTTT
AATGTTGATTGTTAATGATATAATATATGATTATTATCATCTTATGTATG
CAGGTGATGGAAAATCAGAAGAACAAATTCCAATAGCTTGCAAGGACTCA
GTGGCAATTTTGATTATGTTTGATCTAACAAGTCGATGCACATTAAACAG
GTGTCCTTTTCATTATGTATCTAACAAGTCATTTTCTAGGACCAAATCTT
GGTAATTACAGAAAGGTTTGAATCAACTTTTTTCTTGATTGTGGATGTTT
TTGTTTCAGTGTCCCTGGATGGTACAAAGAAGCCAGGAAATGGAATCAGG
TATATAATGATATATATATATATATATATATCATTTGTTACAAATTAACA
AATATTTGCTTGGGCTTATTTATATGCATGCATGTAGATGCATAGGGGTA
TCAATTTTTTACAATGTTTGCTTAATTTTTGTAGACAGCAATTCCAGTGT
TGATAGGAACCAAATTTGATGATTTCATTCAGCTCCCAATTGATTTGCAA
TGGACCATCGCCAGTCAGGTAAAGATTCAAACTTGACCCTTAACCATTGC
TGTTCAATTATGATCTACCCTCATGAGAGTCATGACCATAAGAAAAGAAT
AAAGTATAATGTTTTAGTCGGCCACACATAGTAGAATAAAGTTTTGGTTC
TTGTTATTAAAACAGAACTTTTAGGCTTGAAGATGTATAGTTGTATTTTG
AGTGAATCCAATCAATCCTTATATAATCATGGTAGTATAACTTATATGAC
AAGTTATTATAGTCCAAGGAATGAATGTTTTAGAAGCCTACAGAATGATT
CACTAGGAAATATTTTATATAAACTTTGTATATATCAACTTTGTATATGC
TTTACTGATAAAGATGAATAAGGACAGGGAAACCTTTTGGTCAATGCTTC
AAACTGAAGCCTCTTTTTTGTTTGTTCATTCTTATGATTAAGCTGCTATT
TTATTTACAAATGGTTGTTTTTGGTTGCTACGTCTCAATTGAGAGGGACA
TATAGGCTCACTAATAATGCTCCTCTAACACTTGTTATGCACAAACACAT
AGTTAGGAATGGAGAGACAAGTGATTCAAAAAACAAAGGGAAATGCAACC
TGCAATAATGCTTTTAATTATATTAAAATTACACTTTTACCATAAAAAAT
AAGTGCAAAAATATGTATTTGTCTCTCCATTAATGGAGATGTTCCTTGTT
CCATATATATATATATATATATATATCGTTTTACATTTGCCTAATTTGTA
CCACTTGATTTTAGTTTTTTCTATCTTATTTTCTGCACGCTAACATTTTA
GTTTTGTCATCTATACTTAATGGGTAGAAATGTGTCATCTAGAAACATGG
GCATGATGATGCATTTATTATGAAAACAAACCCCCCAAGTTCCTAATACA
TTACTTTCAGACACATTATTCACATCTTTGTAGGACAGACATATAAAAGA
TAATGTTATTTGTGCTTGTGGATTTCTATACTCAACCACACACTTGCACA
ATTTTAAATGCCTTACTAACTTTCTGAGTTATATTATTTGAGCATATAGA
ATATGACATTTTCTTATATCATATCATCTAACCACGTTCACGTCTAGATC
AGACACCCAAAAAAGTATCACATTTGAGTATGCAAATTTTGTTTTCCAAA
ACTTTTACCTACTTGGTACATAAGTAGCTTGCACCTATCTCCTCAAATGA
TAAATATTTATATAAATGTTAGATTAAACATAAATAGTAGCATTATTATT
TTCTCCATAAAGCGTAATCTAGCATTGGAACTGTTTAATAACAAGGCCCA
GTCCTTTTATCTGGTAAACATGGACCCTATCATTATAAGAAGAGAGTGCA
TCTTTAATGATCATTGAACCCTAAGTAGACTAATTGAGTTCATCTTTAGT
ACTGGATCCTCTCGTATTCTAATGTGATCTTATTTTTACGTACTATATCA
TATATAAAGTTAAAATAATTGTACTGTATATAAATGTAAATGATGTGTCA
TTTGAATATTGTGTTCTGGGTATTTGATTGATGCATGTCATGTATATGAA
ATTGAACAGGCAAGAGCATATGCAAAGGCCCTGAATGCAACGTTGTTCTT
TTCAAGTGCAACCTACAACATCAACGTGAACAAGATCTTCAAGTTCATCA
CTGCAAAACTCTTCGATCTACCATGGACAGTGGAAAGAAATCTAACAGTT
GGAGAGCCAATTATTGATTTCTAA back to topprotein sequence of rna-TanjilR_06514_La_Tanjil_v1.0 >rna-TanjilR_06514_La_Tanjil_v1.0 ID=rna-TanjilR_06514_La_Tanjil_v1.0; Name=rna-TanjilR_06514_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=283bp
MSQFCREVSHSTTLRWRFKHRVSVLRRSLLRFLHSIMICSGRKHTNSTYR
MLQSHAALPSPPPQPPIDFSDEASLEALPVALPPPLFNTHDLDSDLVSLK
ITLLGDCQIGKTSFLVKYVGDVKDQQGRQGKGPNQMDKILDVRGARISYC
IWEVQGDGKSEEQIPIACKDSVAILIMFDLTSRCTLNSVPGWYKEARKWN
QTAIPVLIGTKFDDFIQLPIDLQWTIASQARAYAKALNATLFFSSATYNI
NVNKIFKFITAKLFDLPWTVERNLTVGEPIIDF back to topmRNA from alignment at Chr_LG13-CM007373.1:3745027..3747950- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_06514_La_Tanjil_v1.0 ID=rna-TanjilR_06514_La_Tanjil_v1.0; Name=rna-TanjilR_06514; organism=Lupinus angustifolius; type=mRNA; length=2924bp; location=Sequence derived from: Chr_LG13-CM007373.1:3745027..3747950- (Lupinus angustifolius
ATGTCCCAGTTTTGCCGTGAAGTTAGTCATTCCACCACCCTGCGGTGGCG
GTTTAAGCACCGTGTCTCGGTGCTACGGCGATCCCTCCTCCGCTTCCTCC
ACAGCATTATGATTTGCTCTGGAAGGAAGCATACTAATTCAACGTACCGC
ATGCTGCAGTCGCATGCAGCATTGCCTTCTCCGCCGCCGCAGCCGCCGAT
AGATTTCTCCGACGAGGCTAGCCTTGAAGCGTTGCCGGTGGCCTTGCCAC
CTCCACTGTTTAATACCCATGATTTGGATTCTGATTTGGTTTCCTTGAAG
ATCACTTTGTTGGGTGATTGTCAAATTGGAAAAACCAGCTTTTTGGTAAG
TTTGTCACTTTATCAATAAACAATCATATTTTTTTCCTTTTTAAAATGCA
GTTTCTGTTTGGAGACATTTTAAATAATTAACTTATGGGTTGAGTTGAAT
TTGATATGGGTTGTGTTGATATTTTTTTAATTAATTTAATATTATCATTT
TTTTATTTTCCACGTTTTGTTTGCAGGTGAAATATGTTGGGGATGTAAAA
GATCAGCAAGGGAGACAAGGTAAAGGGCCAAACCAAATGGACAAGATTTT
GGATGTAAGAGGAGCACGAATATCCTATTGTATTTGGGAGGTACAAGGTA
TAATGTAGAAGAACTCAATGTATTTGATGATTTTGGGATTAAGATCTTTT
AATGTTGATTGTTAATGATATAATATATGATTATTATCATCTTATGTATG
CAGGTGATGGAAAATCAGAAGAACAAATTCCAATAGCTTGCAAGGACTCA
GTGGCAATTTTGATTATGTTTGATCTAACAAGTCGATGCACATTAAACAG
GTGTCCTTTTCATTATGTATCTAACAAGTCATTTTCTAGGACCAAATCTT
GGTAATTACAGAAAGGTTTGAATCAACTTTTTTCTTGATTGTGGATGTTT
TTGTTTCAGTGTCCCTGGATGGTACAAAGAAGCCAGGAAATGGAATCAGG
TATATAATGATATATATATATATATATATATCATTTGTTACAAATTAACA
AATATTTGCTTGGGCTTATTTATATGCATGCATGTAGATGCATAGGGGTA
TCAATTTTTTACAATGTTTGCTTAATTTTTGTAGACAGCAATTCCAGTGT
TGATAGGAACCAAATTTGATGATTTCATTCAGCTCCCAATTGATTTGCAA
TGGACCATCGCCAGTCAGGTAAAGATTCAAACTTGACCCTTAACCATTGC
TGTTCAATTATGATCTACCCTCATGAGAGTCATGACCATAAGAAAAGAAT
AAAGTATAATGTTTTAGTCGGCCACACATAGTAGAATAAAGTTTTGGTTC
TTGTTATTAAAACAGAACTTTTAGGCTTGAAGATGTATAGTTGTATTTTG
AGTGAATCCAATCAATCCTTATATAATCATGGTAGTATAACTTATATGAC
AAGTTATTATAGTCCAAGGAATGAATGTTTTAGAAGCCTACAGAATGATT
CACTAGGAAATATTTTATATAAACTTTGTATATATCAACTTTGTATATGC
TTTACTGATAAAGATGAATAAGGACAGGGAAACCTTTTGGTCAATGCTTC
AAACTGAAGCCTCTTTTTTGTTTGTTCATTCTTATGATTAAGCTGCTATT
TTATTTACAAATGGTTGTTTTTGGTTGCTACGTCTCAATTGAGAGGGACA
TATAGGCTCACTAATAATGCTCCTCTAACACTTGTTATGCACAAACACAT
AGTTAGGAATGGAGAGACAAGTGATTCAAAAAACAAAGGGAAATGCAACC
TGCAATAATGCTTTTAATTATATTAAAATTACACTTTTACCATAAAAAAT
AAGTGCAAAAATATGTATTTGTCTCTCCATTAATGGAGATGTTCCTTGTT
CCATATATATATATATATATATATATCGTTTTACATTTGCCTAATTTGTA
CCACTTGATTTTAGTTTTTTCTATCTTATTTTCTGCACGCTAACATTTTA
GTTTTGTCATCTATACTTAATGGGTAGAAATGTGTCATCTAGAAACATGG
GCATGATGATGCATTTATTATGAAAACAAACCCCCCAAGTTCCTAATACA
TTACTTTCAGACACATTATTCACATCTTTGTAGGACAGACATATAAAAGA
TAATGTTATTTGTGCTTGTGGATTTCTATACTCAACCACACACTTGCACA
ATTTTAAATGCCTTACTAACTTTCTGAGTTATATTATTTGAGCATATAGA
ATATGACATTTTCTTATATCATATCATCTAACCACGTTCACGTCTAGATC
AGACACCCAAAAAAGTATCACATTTGAGTATGCAAATTTTGTTTTCCAAA
ACTTTTACCTACTTGGTACATAAGTAGCTTGCACCTATCTCCTCAAATGA
TAAATATTTATATAAATGTTAGATTAAACATAAATAGTAGCATTATTATT
TTCTCCATAAAGCGTAATCTAGCATTGGAACTGTTTAATAACAAGGCCCA
GTCCTTTTATCTGGTAAACATGGACCCTATCATTATAAGAAGAGAGTGCA
TCTTTAATGATCATTGAACCCTAAGTAGACTAATTGAGTTCATCTTTAGT
ACTGGATCCTCTCGTATTCTAATGTGATCTTATTTTTACGTACTATATCA
TATATAAAGTTAAAATAATTGTACTGTATATAAATGTAAATGATGTGTCA
TTTGAATATTGTGTTCTGGGTATTTGATTGATGCATGTCATGTATATGAA
ATTGAACAGGCAAGAGCATATGCAAAGGCCCTGAATGCAACGTTGTTCTT
TTCAAGTGCAACCTACAACATCAACGTGAACAAGATCTTCAAGTTCATCA
CTGCAAAACTCTTCGATCTACCATGGACAGTGGAAAGAAATCTAACAGTT
GGAGAGCCAATTATTGATTTCTAA back to topCoding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3745027..3747950- >rna-TanjilR_06514_La_Tanjil_v1.0 ID=rna-TanjilR_06514_La_Tanjil_v1.0; Name=rna-TanjilR_06514; organism=Lupinus angustifolius; type=CDS; length=852bp; location=Sequence derived from: Chr_LG13-CM007373.1:3745027..3747950- (Lupinus angustifolius
ATGTCCCAGTTTTGCCGTGAAGTTAGTCATTCCACCACCCTGCGGTGGCG
GTTTAAGCACCGTGTCTCGGTGCTACGGCGATCCCTCCTCCGCTTCCTCC
ACAGCATTATGATTTGCTCTGGAAGGAAGCATACTAATTCAACGTACCGC
ATGCTGCAGTCGCATGCAGCATTGCCTTCTCCGCCGCCGCAGCCGCCGAT
AGATTTCTCCGACGAGGCTAGCCTTGAAGCGTTGCCGGTGGCCTTGCCAC
CTCCACTGTTTAATACCCATGATTTGGATTCTGATTTGGTTTCCTTGAAG
ATCACTTTGTTGGGTGATTGTCAAATTGGAAAAACCAGCTTTTTGGTGAA
ATATGTTGGGGATGTAAAAGATCAGCAAGGGAGACAAGGTAAAGGGCCAA
ACCAAATGGACAAGATTTTGGATGTAAGAGGAGCACGAATATCCTATTGT
ATTTGGGAGGTACAAGGTGATGGAAAATCAGAAGAACAAATTCCAATAGC
TTGCAAGGACTCAGTGGCAATTTTGATTATGTTTGATCTAACAAGTCGAT
GCACATTAAACAGTGTCCCTGGATGGTACAAAGAAGCCAGGAAATGGAAT
CAGACAGCAATTCCAGTGTTGATAGGAACCAAATTTGATGATTTCATTCA
GCTCCCAATTGATTTGCAATGGACCATCGCCAGTCAGGCAAGAGCATATG
CAAAGGCCCTGAATGCAACGTTGTTCTTTTCAAGTGCAACCTACAACATC
AACGTGAACAAGATCTTCAAGTTCATCACTGCAAAACTCTTCGATCTACC
ATGGACAGTGGAAAGAAATCTAACAGTTGGAGAGCCAATTATTGATTTCT
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Annotated Terms
The
following terms have been associated with
this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
| GO:0003924 | GTPase activity |
|
