rna-TanjilR_19698
|
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19698 vs. DB:Swiss
Match: SLAH4_ARATH (S-type anion channel SLAH4 OS=Arabidopsis thaliana OX=3702 GN=SLAH4 PE=2 SV=1) HSP 1 Score: 257.684 bits (657), Expect = 7.432e-80 Identity = 159/246 (64.63%), Postives = 189/246 (76.83%), Query Frame = 1 Query: 133 HAGYFRXXXXXXXXXXXXXXXXEPIQDAHALRPLFSVIPSTALILLWSLALFTLVTLSFLYVLKCVFHFKMVKDEFLDHVGVNYLFVPWICCXXXXXXXXXXXXXXXYYQILWWVFVAPILVLDVKIYGQWFTKGKRFLSTVANPTSQLSVIGNLVGAQVAAQMGWKESAICMFSLGIAHYLVLFVTLYQRLPGNNNLPPMLRPVFFLFFAAPSMASLAWNSICGKFDTGSKMXXXXXXXXXICLV 870
HAGYFRISLSL SQALL KI++ L S +PS A LLW LAL T V+L FLY KC+F F MVK+EF ++GVNYL+ P I CLLLL+S+P++ P ++ YQ L+W+F P+L LD K+YGQWFT KRFLS +ANP SQ+SVI NLV A+ AA+MGWKE A+C+FSLG+ HYLV+FVTLYQRLPG NN P LRPVFFLFFAAP+ ASLAWNSICG FDT +KM FFLSLF+FI LV
Sbjct: 42 HAGYFRISLSLCSQALLWKIMVH----------LHSELPSMAYYLLWYLALATQVSLCFLYAFKCIFLFDMVKEEFSHYIGVNYLYAPSISCLLLLQSAPMIEPHSVLYQTLFWIFAVPVLTLDTKLYGQWFTTEKRFLSIMANPASQVSVIANLVAARGAAEMGWKECALCLFSLGMVHYLVIFVTLYQRLPGGNNFPTTLRPVFFLFFAAPATASLAWNSICGNFDTIAKMLFFLSLFIFISLV 277 HSP 2 Score: 62.003 bits (149), Expect = 4.642e-9 Identity = 33/59 (55.93%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 1318 LYIFLAFLNKQVSRPMLFKKSMKKFSVAWWAYSFPLTALALASTQYALEVDGVMAHATM 1494
L+IF++ V RP L KKS+K+F+VAWWAYSFP+T LAL S QYA EV +A M
Sbjct: 270 LFIFISL----VCRPNLLKKSIKRFNVAWWAYSFPITFLALNSVQYAQEVKDHVASVLM 324
BLAST of rna-TanjilR_19698 vs. DB:Swiss
Match: SLAH1_ARATH (S-type anion channel SLAH1 OS=Arabidopsis thaliana OX=3702 GN=SLAH1 PE=2 SV=1) HSP 1 Score: 258.455 bits (659), Expect = 8.073e-80 Identity = 147/233 (63.09%), Postives = 182/233 (78.11%), Query Frame = 1 Query: 133 HAGYFRXXXXXXXXXXXXXXXXEPIQDAHALRPLFSVIPSTALILLWSLALFTLVTLSFLYVLKCVFHFKMVKDEFLDHVGVNYLFVPWICCXXXXXXXXXXXXXXXYYQILWWVFVAPILVLDVKIYGQWFTKGKRFLSTVANPTSQLSVIGNLVGAQVAAQMGWKESAICMFSLGIAHYLVLFVTLYQRLPGNNNLPPMLRPVFFLFFAAPSMASLAWNSICGKFDTGSKM 831
HAGYFRISLSL SQALL KI+I P ++ ++ + S +PS A LLW LAL T V+L FLY LKC+F F VK+EFL ++GVNYL+ P I LL+L+S+P++ P ++ YQ L+W+F P+L LD+K+YGQWFT KRFLS +ANP SQ+SVI NLV A+ AA+MGW E A+CMFSLG+ HYLV+FVTLYQRLPG NN P LRP+FFLF AAP+MASLAWNSICG FD +KM
Sbjct: 42 HAGYFRISLSLCSQALLWKIMIAP--ESPSMSHMHSKLPSMAFHLLWYLALVTQVSLCFLYALKCIFFFDKVKEEFLHYIGVNYLYAPSISWLLMLQSAPMMEPNSVLYQTLFWIFAVPVLTLDIKLYGQWFTTEKRFLSMLANPASQVSVIANLVAARGAAEMGWNECALCMFSLGMVHYLVIFVTLYQRLPGGNNFPAKLRPIFFLFVAAPAMASLAWNSICGTFDAVAKM 272 HSP 2 Score: 66.2402 bits (160), Expect = 2.453e-10 Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1 Query: 1318 LYIFLAFLNKQVSRPMLFKKSMKKFSVAWWAYSFPLTALALASTQYALEVDGVMAHATM 1494
L+IF++ V RP LFKKSMK+F+VAWWAYSFPLT LAL S QYA EV + M
Sbjct: 278 LFIFMSL----VCRPNLFKKSMKRFNVAWWAYSFPLTFLALDSVQYAQEVKDPVGSGLM 332
BLAST of rna-TanjilR_19698 vs. DB:Swiss
Match: SLAH3_ARATH (S-type anion channel SLAH3 OS=Arabidopsis thaliana OX=3702 GN=SLAH3 PE=1 SV=1) HSP 1 Score: 173.711 bits (439), Expect = 8.094e-46 Identity = 90/188 (47.87%), Postives = 128/188 (68.09%), Query Frame = 1 Query: 268 LWSLALFTLVTLSFLYVLKCVFHFKMVKDEFLDHVGVNYLFVPWICCXXXXXXXXXXXXXXXYYQILWWVFVAPILVLDVKIYGQWFTKGKRFLSTVANPTSQLSVIGNLVGAQVAAQMGWKESAICMFSLGIAHYLVLFVTLYQRLPGNNNLPPMLRPVFFLFFAAPSMASLAWNSICGKFDTGSKM 831
LW +++ ++T++ +Y+LK + F+ V+ E+ + +N+ F P+I L L P T L + LW++ + P + L++KIYGQW + G+R LS VANPT+ LSV+GN VGA + A MG +E I +++G+AHYLVLFVTLYQRLP N LP L PVFFLF AAPS+AS+AW + G FD GSK+
Sbjct: 298 LWFISVALILTIATIYLLKIILFFEAVRREYYHPIRINFFFAPFISLLFLALGVPPSIITDLPH-FLWYLLMFPFICLELKIYGQWMSGGQRRLSRVANPTNHLSVVGNFVGALLGASMGLREGPIFFYAVGMAHYLVLFVTLYQRLPTNETLPKDLHPVFFLFVAAPSVASMAWAKVTGSFDYGSKV 484
BLAST of rna-TanjilR_19698 vs. DB:Swiss
Match: SLAH2_ARATH (S-type anion channel SLAH2 OS=Arabidopsis thaliana OX=3702 GN=SLAH2 PE=2 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 1.260e-45 Identity = 92/189 (48.68%), Postives = 123/189 (65.08%), Query Frame = 1 Query: 265 LLWSLALFTLVTLSFLYVLKCVFHFKMVKDEFLDHVGVNYLFVPWICCXXXXXXXXXXXXXXXYYQILWWVFVAPILVLDVKIYGQWFTKGKRFLSTVANPTSQLSVIGNLVGAQVAAQMGWKESAICMFSLGIAHYLVLFVTLYQRLPGNNNLPPMLRPVFFLFFAAPSMASLAWNSICGKFDTGSKM 831
+LW ++L L+ +S Y+ K + F+ V+ EF + VN+ F P I L L P + L LW+ +APIL L++KIYGQW + G+R LS VANPT+ LS++GN GA + A MG KE I F++G+A+YLVLFVTLYQRLP N LP L PVFFLF AAP++AS+AW I FD GS++
Sbjct: 182 VLWWISLLLLLAVSITYLFKTILFFEAVRREFRHPIRVNFFFAPLISILFLALGIPHSIISHLP-STLWYFLMAPILFLEMKIYGQWMSGGQRRLSKVANPTNHLSIVGNFAGALLGASMGLKEGPIFFFAIGLAYYLVLFVTLYQRLPTNETLPKELHPVFFLFVAAPAVASMAWTKISASFDLGSRL 369
BLAST of rna-TanjilR_19698 vs. DB:Swiss
Match: SLAC1_ARATH (Guard cell S-type anion channel SLAC1 OS=Arabidopsis thaliana OX=3702 GN=SLAC1 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 2.000e-45 Identity = 94/191 (49.21%), Postives = 132/191 (69.11%), Query Frame = 1 Query: 262 ILLWSLALFTLVTLSFLYVLKCVFHFKMVKDEFLDHVGVNYLFVPWICCXXXXXXXXXXXXXXXYY--QILWWVFVAPILVLDVKIYGQWFTKGKRFLSTVANPTSQLSVIGNLVGAQVAAQMGWKESAICMFSLGIAHYLVLFVTLYQRLPGNNNLPPMLRPVFFLFFAAPSMASLAWNSICGKFDTGSK 828
+++W +L LV++SF Y+LKC+F+F+ VK E+ V VN+ F PW+ C+ L S P + Y +W VF+ P L++KIYGQW + GKR L VANP+S LSV+GN VGA +A+++GW E A ++++G AHYLV+FVTLYQRLP + LP L PV+ +F AAPS AS+AWN+I G+FD S+
Sbjct: 226 LVVWLFSLVVLVSVSFTYILKCIFYFEAVKREYFHPVRVNFFFAPWVVCMFLAISVPPMFSPNRKYLHPAIWCVFMGPYFFLELKIYGQWLSGGKRRLCKVANPSSHLSVVGNFVGAILASKVGWDEVAKFLWAVGFAHYLVVFVTLYQRLPTSEALPKELHPVYSMFIAAPSAASIAWNTIYGQFDGCSR 416 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19698 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 5 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19698_La_Tanjil_v1.0 ID=rna-TanjilR_19698_La_Tanjil_v1.0; Name=rna-TanjilR_19698; organism=Lupinus angustifolius; type=mRNA; length=1623bpback to top protein sequence of rna-TanjilR_19698_La_Tanjil_v1.0 >rna-TanjilR_19698_La_Tanjil_v1.0 ID=rna-TanjilR_19698_La_Tanjil_v1.0; Name=rna-TanjilR_19698_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=379bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3873965..3875587+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19698_La_Tanjil_v1.0 ID=rna-TanjilR_19698_La_Tanjil_v1.0; Name=rna-TanjilR_19698; organism=Lupinus angustifolius; type=mRNA; length=1623bp; location=Sequence derived from: Chr_LG13-CM007373.1:3873965..3875587+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3873965..3875587+ >rna-TanjilR_19698_La_Tanjil_v1.0 ID=rna-TanjilR_19698_La_Tanjil_v1.0; Name=rna-TanjilR_19698; organism=Lupinus angustifolius; type=CDS; length=1140bp; location=Sequence derived from: Chr_LG13-CM007373.1:3873965..3875587+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
|