rna-TanjilR_19697
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK31_ARATH (Probable WRKY transcription factor 31 OS=Arabidopsis thaliana OX=3702 GN=WRKY31 PE=2 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 2.734e-36 Identity = 37/39 (94.87%), Postives = 38/39 (97.44%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
I+DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQV
Sbjct: 296 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMAGGCPVRKQV 334 HSP 2 Score: 85.8853 bits (211), Expect = 2.734e-36 Identity = 80/276 (28.99%), Postives = 123/276 (44.57%), Query Frame = 2 Query: 767 SDQSMVEDEISPNSEDKRSKNEVNKIITPTSI**NSVSXXXXXXXXXXXXXHLP**IQKAVLEAELERMKVENQRLKETFDEVNTNYKALQMHVVSLMRDQKGEDGEEREVFDGKVE-ENKKRKQIETNGVLVPRQFMDLGLATNISETKIEXXXXXXXXXXXXXXXXXXNNNLEVASKELGTSKNVNGSGSGSDEGLVFDQEKKDFG---------------NGSRGIESPPKN---------------VDQ--AEATMRKARVSVRARSEAPMV 1495
SD+S V+D +S + EDKR+K I+ A L+ EL++MK+ENQRL++ + TN+ ALQM +V++MR Q+ + + + + + E +KR++++ ++VPRQFMDLG ++ +E + EV+S+E T + SGS L+ ++ G N PK+ +DQ AEATMRKARVSVRARSEA M+
Sbjct: 89 SDESTVDDGLSMDMEDKRAK------------------------------------IENAQLQEELKKMKIENQRLRDMLSQATTNFNALQMQLVAVMRQQEQRNSSQDHLLAQESKAEGRKRQELQ---IMVPRQFMDLGPSSGAAE-----------------------HGAEVSSEERTTVR------SGSPPSLLESSNPRENGKRLLGREESSEESESNAWGNPNKVPKHNPSSSNSNGNRNGNVIDQSAAEATMRKARVSVRARSEAAMI 296 HSP 3 Score: 94.3597 bits (233), Expect = 1.294e-18 Identity = 90/141 (63.83%), Postives = 108/141 (76.60%), Query Frame = 1 Query: 2080 KVQRCAEDRAVLITTYEGNHNHPLXXXXXXXXXXXXXXXRMLLSGSMSSADSIMN-ANFLSRTLLPCXXXXXXXXXXXPFPTVTLDLTXXXXXXXXXXXXXXXXXXXXXXXANSSASLMPQMLGQALYN---QSKFSGLQM 2490
+VQRCAEDR++LITTYEGNHNHPLPPAA AMA TT++AA MLLSGSMSS D +MN N L+R +LPCSSSMA+ISASAPFPT+TLDLT SPN + F Q + A ++PQ++GQA+YN QSKFSGLQ+
Sbjct: 333 QVQRCAEDRSILITTYEGNHNHPLPPAATAMASTTTAAASMLLSGSMSSQDGLMNPTNLLARAILPCSSSMATISASAPFPTITLDLTNSPNGNNPNMTTNNPLMQFAQRPGFNPA-VLPQVVGQAMYNNQQQSKFSGLQL 472
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRKY6_ARATH (WRKY transcription factor 6 OS=Arabidopsis thaliana OX=3702 GN=WRKY6 PE=1 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 7.674e-36 Identity = 37/39 (94.87%), Postives = 39/39 (100.00%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
I+DGCQWRKYGQKMAKGNPCPRAYYRCTMA+GCPVRKQV
Sbjct: 311 ISDGCQWRKYGQKMAKGNPCPRAYYRCTMATGCPVRKQV 349 HSP 2 Score: 82.8037 bits (203), Expect = 7.674e-36 Identity = 79/247 (31.98%), Postives = 116/247 (46.96%), Query Frame = 2 Query: 767 SDQSMVEDEISPNSEDKRSKNEVNKIITPTSI**NSVSXXXXXXXXXXXXXHLP**IQKAVLEAELERMKVENQRLKETFDEVNTNYKALQMHVVSLMRDQKGEDGEEREVFDGKVEENKKRKQIETNGVLVPRQFMDLGLATNISETKIEXXXXXXXXXXXXXXXXXXNNNLEVASKELGTS---KNVNGSGSGSDEGLVFDQEKKDFGNGSRGIESPPKNVDQ-AEATMRKARVSVRARSEAPMV 1495
SD+SM++D S EDKR+KNE+ K L+ EL++M ++NQ+L+E +V+ +Y +LQMH+VSLM+ Q+ ++ + E + K EE +VPRQF+DLG + E + N++ E ++ G+S + NG G +E + K N + P DQ AEATMRKARVSVRARSEAPM+
Sbjct: 135 SDESMIDDGESSEMEDKRAKNELVK------------------------------------LQDELKKMTMDNQKLRELLTQVSNSYTSLQMHLVSLMQQQQQQNNKVIEAAE-KPEE-----------TIVPRQFIDLGPTRAVGEAE-----------------DVSNSSSEDRTRSGGSSAAERRSNGKRLGREESPETESNKIQKVNSTT-----PTTFDQTAEATMRKARVSVRARSEAPMI 311 HSP 3 Score: 114.775 bits (286), Expect = 4.126e-25 Identity = 91/151 (60.26%), Postives = 106/151 (70.20%), Query Frame = 1 Query: 2080 KVQRCAEDRAVLITTYEGNHNHPLXXXXXXXXXXXXXXXRMLLSGSMSSADSIMN-ANFLSRTLLPCXXXXXXXXXXXPFPTVTLDLTXXXXXXXXXXXXXXXXXXXXXXX------------ANSSASLMPQMLGQALYNQSKFSGLQMS 2493
+VQRCAEDR++LITTYEGNHNHPLPPAA+AMA TT++AA MLLSGSMSS D +MN N L+R +LPCS+SMA+ISASAPFPTVTLDLT SP P P N N ++P ++GQALYNQSKFSGLQ S
Sbjct: 348 QVQRCAEDRSILITTYEGNHNHPLPPAAVAMASTTTAAANMLLSGSMSSHDGMMNPTNLLARAVLPCSTSMATISASAPFPTVTLDLTHSPPPPNGSNPSSSAATNNNHNSLMQRPQQQQQQMTNLPPGMLPHVIGQALYNQSKFSGLQFS 498
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK42_ARATH (WRKY transcription factor 42 OS=Arabidopsis thaliana OX=3702 GN=WRKY42 PE=1 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.679e-32 Identity = 36/39 (92.31%), Postives = 38/39 (97.44%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
++DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQV
Sbjct: 291 LSDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQV 329 HSP 2 Score: 73.559 bits (179), Expect = 2.679e-32 Identity = 77/245 (31.43%), Postives = 105/245 (42.86%), Query Frame = 2 Query: 767 SDQSMVEDEISPNSEDKRSKNEVNKIITPTSI**NSVSXXXXXXXXXXXXXHLP**IQKAVLEAELERMKVENQRLKETFDEVNTNYKALQMHVVSLMRDQKGEDGEEREVFDGKVEENKKRKQIETNGVLVPRQFMDLGLATNISETKIEXXXXXXXXXXXXXXXXXXNNNLEVASKELGTSKNVNGSGSGSDEGLVFDQEKKDFGNGSRGIESPPKNVDQA--EATMRKARVSVRARSEAPMV 1495
SD+SMV+D +S + E+KR+K E A L EL++ +NQRLK+ + N+ +LQM +V++MR Q ED E N K +VPRQF+DLG ++ ++ S S S N V +E NG + + GNGS S K ++QA EATMRKARVSVRARSEAPM+
Sbjct: 91 SDESMVDDGLSVDMEEKRTKCE------------------------------------NAQLREELKKASEDNQRLKQMLSQTTNNFNSLQMQLVAVMRQQ--EDHHHL----ATTENNDNVKNRHEVPEMVPRQFIDLGPHSDEVSSEERTTVRSGSPPSLLEKSSSRQNGKRVLVREESPETESNGWRNPNKVPKHHASSSICGGNGSENASS--KVIEQAAAEATMRKARVSVRARSEAPML 291 HSP 3 Score: 109.768 bits (273), Expect = 1.396e-23 Identity = 88/143 (61.54%), Postives = 102/143 (71.33%), Query Frame = 1 Query: 2080 KVQRCAEDRAVLITTYEGNHNHPLXXXXXXXXXXXXXXXRMLLSGS-MSSADSIMN-ANFLSRTLLPCXXXXXXXXXXXPFPTVTLDLTXXXXXXXXXXXXXXXXXXXXXXXANSSASLMPQMLGQALY--NQSKFSGLQMSS 2496
+VQRCAEDR +LITTYEGNHNHPLPPAAM MA TT++AA MLLSGS MS+ D +MN N L+RT+LPCSSSMA+ISASAPFPT+TLDLT P Q + S++P M+GQALY QSKFSGL M S
Sbjct: 328 QVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAASMLLSGSTMSNQDGLMNPTNLLARTILPCSSSMATISASAPFPTITLDLT-ESPNGNNPTNNPLMQFSQRSGLVELNQSVLPHMMGQALYYNQQSKFSGLHMPS 469
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK47_ARATH (Probable WRKY transcription factor 47 OS=Arabidopsis thaliana OX=3702 GN=WRKY47 PE=1 SV=2) HSP 1 Score: 86.6557 bits (213), Expect = 5.200e-18 Identity = 36/39 (92.31%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
+ DGCQWRKYGQKMAKGNPCPRAYYRCTMA GCPVRKQV
Sbjct: 238 VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAVGCPVRKQV 276 HSP 2 Score: 27.7202 bits (60), Expect = 5.200e-18 Identity = 13/17 (76.47%), Postives = 14/17 (82.35%), Query Frame = 2 Query: 1445 MRKARVSVRARSEAPMV 1495
RKARVSVRARS+A V
Sbjct: 222 YRKARVSVRARSDATTV 238
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK61_ARATH (Probable WRKY transcription factor 61 OS=Arabidopsis thaliana OX=3702 GN=WRKY61 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 8.163e-16 Identity = 33/39 (84.62%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
+ DGCQWRKYGQK+AKGNPCPRAYYRCT+A+ CPVRKQV
Sbjct: 190 MNDGCQWRKYGQKIAKGNPCPRAYYRCTIAASCPVRKQV 228 HSP 2 Score: 25.0238 bits (53), Expect = 8.163e-16 Identity = 9/17 (52.94%), Postives = 13/17 (76.47%), Query Frame = 2 Query: 1445 MRKARVSVRARSEAPMV 1495
++K RVSVR+R E P +
Sbjct: 174 VKKTRVSVRSRCETPTM 190
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRKY9_ARATH (Probable WRKY transcription factor 9 OS=Arabidopsis thaliana OX=3702 GN=WRKY9 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 1.150e-15 Identity = 34/39 (87.18%), Postives = 36/39 (92.31%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
+ DGCQWRKYGQK AKGNPCPRAYYRCT+A GCPVRKQV
Sbjct: 234 MNDGCQWRKYGQKTAKGNPCPRAYYRCTVAPGCPVRKQV 272 HSP 2 Score: 25.409 bits (54), Expect = 1.150e-15 Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2 Query: 1448 RKARVSVRARSE 1483
RKARVSVRAR E
Sbjct: 219 RKARVSVRARCE 230
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK72_ARATH (Probable WRKY transcription factor 72 OS=Arabidopsis thaliana OX=3702 GN=WRKY72 PE=2 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 6.481e-15 Identity = 34/39 (87.18%), Postives = 37/39 (94.87%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
+ DGCQWRKYGQK+AKGNPCPRAYYRCT+A GCPVRKQV
Sbjct: 226 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAPGCPVRKQV 264
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK36_ARATH (Probable WRKY transcription factor 36 OS=Arabidopsis thaliana OX=3702 GN=WRKY36 PE=2 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 8.579e-14 Identity = 32/39 (82.05%), Postives = 34/39 (87.18%), Query Frame = 3 Query: 1599 ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
I DGCQWRKYGQK AK NP PRAYYRC+M+S CPVRKQV
Sbjct: 202 INDGCQWRKYGQKTAKTNPLPRAYYRCSMSSNCPVRKQV 240
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK28_ORYSJ (WRKY transcription factor WRKY28 OS=Oryza sativa subsp. japonica OX=39947 GN=WRKY28 PE=2 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 7.797e-11 Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 3 Query: 1557 FFLAD-GNLSYICS*ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
F AD +LS + + DG QWRKYGQK+ K NPCPRAY+RC+ A CPV+K+V
Sbjct: 238 FVHADPSDLSLV---VKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKV 288
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Match: WRK28_ORYSI (WRKY transcription factor WRKY28 OS=Oryza sativa subsp. indica OX=39946 GN=WRKY28 PE=3 SV=2) HSP 1 Score: 68.9366 bits (167), Expect = 8.015e-11 Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 3 Query: 1557 FFLAD-GNLSYICS*ITDGCQWRKYGQKMAKGNPCPRAYYRCTMASGCPVRKQV 1715
F AD +LS + + DG QWRKYGQK+ K NPCPRAY+RC+ A CPV+K+V
Sbjct: 238 FVHADPSDLSLV---VKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPACPVKKKV 288 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19697 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19697_La_Tanjil_v1.0 ID=rna-TanjilR_19697_La_Tanjil_v1.0; Name=rna-TanjilR_19697; organism=Lupinus angustifolius; type=mRNA; length=2745bpback to top protein sequence of rna-TanjilR_19697_La_Tanjil_v1.0 >rna-TanjilR_19697_La_Tanjil_v1.0 ID=rna-TanjilR_19697_La_Tanjil_v1.0; Name=rna-TanjilR_19697_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=593bpback to top mRNA from alignment at Chr_LG13-CM007373.1:3889548..3892292- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19697_La_Tanjil_v1.0 ID=rna-TanjilR_19697_La_Tanjil_v1.0; Name=rna-TanjilR_19697; organism=Lupinus angustifolius; type=mRNA; length=2745bp; location=Sequence derived from: Chr_LG13-CM007373.1:3889548..3892292- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:3889548..3892292- >rna-TanjilR_19697_La_Tanjil_v1.0 ID=rna-TanjilR_19697_La_Tanjil_v1.0; Name=rna-TanjilR_19697; organism=Lupinus angustifolius; type=CDS; length=1782bp; location=Sequence derived from: Chr_LG13-CM007373.1:3889548..3892292- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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