rna-TanjilR_19683
Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RAA1F_ARATH (Ras-related protein RABA1f OS=Arabidopsis thaliana OX=3702 GN=RABA1F PE=2 SV=1) HSP 1 Score: 274.633 bits (701), Expect = 9.596e-86 Identity = 128/143 (89.51%), Postives = 138/143 (96.50%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPAALPKGQTINIGGRDDVSAVKKAGCCS 2407 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDAN+VIMFVGNKADLRHLRAVST+DA+AFAERENTFF+ETSALES+NV+NAFTEVL+QIY VV RK L+IGDDPAALPKGQTIN+G +DDVSAVKK GCCS Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMFVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESMNVENAFTEVLSQIYRVVSRKALDIGDDPAALPKGQTINVGSKDDVSAVKKVGCCS 216 HSP 2 Score: 149.443 bits (376), Expect = 1.273e-39 Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER 222 M AYRADD+YDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER Sbjct: 1 MAAYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER 74
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RB11B_TOBAC (Ras-related protein Rab11B OS=Nicotiana tabacum OX=4097 GN=RAB11B PE=2 SV=1) HSP 1 Score: 268.47 bits (685), Expect = 1.773e-83 Identity = 126/144 (87.50%), Postives = 138/144 (95.83%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPAALPKGQTINIGGRDDVSAVKKAGCCSA 2410 RYRAITSAYYRGAVGAL+VYD+TRHVTFENVERWLKELRDHTD N+VIM VGNKADLRHLRAVST+DA+AFAERENTFF+ETSALESLNV+NAFTEVLT+IY VVCRK LE+GDDPAALPKGQTIN+ G+DDVSAVKK GCCS+ Sbjct: 75 RYRAITSAYYRGAVGALVVYDITRHVTFENVERWLKELRDHTDQNIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALESLNVENAFTEVLTEIYKVVCRKALEVGDDPAALPKGQTINV-GKDDVSAVKKVGCCSS 217 HSP 2 Score: 140.584 bits (353), Expect = 1.616e-36 Identity = 72/95 (75.79%), Postives = 81/95 (85.26%), Query Frame = 1 Query: 4 GAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERLPLLSLISFYFSCNCLVGNLVI 288 G YRA+DDYDYLFK+VLIGDSGVGKSNLLSRF++NEF+LESKSTIGVEFATRSI VDDKIVKAQIWDTAGQER ++ S Y+ VG LV+ Sbjct: 3 GGYRAEDDYDYLFKLVLIGDSGVGKSNLLSRFSRNEFNLESKSTIGVEFATRSIRVDDKIVKAQIWDTAGQERYR--AITSAYY--RGAVGALVV 93
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RAA1I_ARATH (Ras-related protein RABA1i OS=Arabidopsis thaliana OX=3702 GN=RABA1I PE=2 SV=1) HSP 1 Score: 264.233 bits (674), Expect = 8.749e-82 Identity = 125/145 (86.21%), Postives = 136/145 (93.79%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDP-AALPKGQTINIGGRDDVSAVKKAGCCSA 2410 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDAN+VIM VGNKADLRHLRA+ST++A+AFAERENTFF+ETSALE++NVDNAFTEVLTQIY VV +K LE GDDP ALPKGQ IN+GGRDD+SAVKK GCCSA Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANIVIMLVGNKADLRHLRAISTEEAKAFAERENTFFMETSALEAVNVDNAFTEVLTQIYRVVSKKALEAGDDPTTALPKGQMINVGGRDDISAVKKPGCCSA 218 HSP 2 Score: 137.117 bits (344), Expect = 2.611e-35 Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER 222 MGAYRA+DDYDYLFKVVL GDSGVGKSNLLSRFT+N+FS +S++TIGVEFATRSI DDKIVKAQIWDTAGQER Sbjct: 1 MGAYRAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRATIGVEFATRSIQCDDKIVKAQIWDTAGQER 74
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RAA1G_ARATH (Ras-related protein RABA1g OS=Arabidopsis thaliana OX=3702 GN=RABA1G PE=2 SV=1) HSP 1 Score: 257.299 bits (656), Expect = 2.906e-79 Identity = 119/144 (82.64%), Postives = 133/144 (92.36%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPAALPKGQTINIGGRDDVSAVKKAGCCSA 2410 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHT+AN+VIM VGNKADLRHLRAVST+DA+AFAERENTFF+ETSALE+LNV+NAFTEVL+QIY V +K L+IGDD LPKGQ+IN+G +DDVS VKK GCCS+ Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTEANIVIMLVGNKADLRHLRAVSTEDAKAFAERENTFFMETSALEALNVENAFTEVLSQIYRVASKKALDIGDDHTTLPKGQSINVGSKDDVSEVKKVGCCSS 217 HSP 2 Score: 146.747 bits (369), Expect = 9.410e-39 Identity = 69/79 (87.34%), Postives = 75/79 (94.94%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERLPLLS 237 M AYRADDDYD+L+KVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRSIHVD+KIVKAQIWDTAGQER ++ Sbjct: 1 MAAYRADDDYDFLYKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSIHVDEKIVKAQIWDTAGQERYRAIT 79
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RAA1H_ARATH (Ras-related protein RABA1h OS=Arabidopsis thaliana OX=3702 GN=RABA1H PE=2 SV=1) HSP 1 Score: 250.366 bits (638), Expect = 1.321e-76 Identity = 118/144 (81.94%), Postives = 131/144 (90.97%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDP-AALPKGQTINIGGRDDVSAVKKAGCCS 2407 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDAN VIM VGNKADL HLRA+ST++ + FAERENTFF+ETSALE++NV+NAFTEVLTQIY VV +K L+ GDDP ALPKGQ IN+G RDDVSAVKK+GCC+ Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANTVIMLVGNKADLNHLRAISTEEVKDFAERENTFFMETSALEAINVENAFTEVLTQIYRVVSKKALDAGDDPTTALPKGQMINVGSRDDVSAVKKSGCCA 217 HSP 2 Score: 136.346 bits (342), Expect = 4.448e-35 Identity = 64/79 (81.01%), Postives = 72/79 (91.14%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERLPLLS 237 MG Y+A+DDYDYLFKVVL GDSGVGKSNLLSRFT+N+FS +S+STIGVEFATRSI VDDKIVKAQIWDTAGQER ++ Sbjct: 1 MGTYKAEDDYDYLFKVVLTGDSGVGKSNLLSRFTRNDFSHDSRSTIGVEFATRSIQVDDKIVKAQIWDTAGQERYRAIT 79
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RAA1E_ARATH (Ras-related protein RABA1e OS=Arabidopsis thaliana OX=3702 GN=RABA1E PE=2 SV=1) HSP 1 Score: 240.35 bits (612), Expect = 6.993e-73 Identity = 111/144 (77.08%), Postives = 128/144 (88.89%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPAALPKGQTINIGGRDDVSAVKKAGCCSA 2410 RYRAITSAYYRGAVGALLVYD+TRH+TFENVERWLKELRDHTDANVVIM VGNKADLRHLRAV T++AR+F+EREN FF+ETSAL++ NV+ AFT VLTQIY V+ RK L+ DP +LPKGQTI+IG +DDV+AVK +GCCS Sbjct: 74 RYRAITSAYYRGAVGALLVYDITRHITFENVERWLKELRDHTDANVVIMLVGNKADLRHLRAVPTEEARSFSERENMFFMETSALDATNVEQAFTHVLTQIYRVMSRKALDGTGDPMSLPKGQTIDIGNKDDVTAVKSSGCCSG 217 HSP 2 Score: 146.362 bits (368), Expect = 1.248e-38 Identity = 67/74 (90.54%), Postives = 74/74 (100.00%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER 222 MGAYRADDDYDYLFK+VLIGDSGVGKSNLLSRFT+NEFS+ESKSTIGVEFATRS+HVD+KI+KAQ+WDTAGQER Sbjct: 1 MGAYRADDDYDYLFKLVLIGDSGVGKSNLLSRFTRNEFSIESKSTIGVEFATRSVHVDEKIIKAQLWDTAGQER 74
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RIC2_ORYSJ (Ras-related protein RIC2 OS=Oryza sativa subsp. japonica OX=39947 GN=RIC2 PE=2 SV=2) HSP 1 Score: 225.713 bits (574), Expect = 2.633e-67 Identity = 107/145 (73.79%), Postives = 124/145 (85.52%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPAALP-KGQTINIGGRDDVSAVKKAGCCSA 2410 RYRAITSAYYRGAVGALLVYDVTRH TFENVERWLKELRDHTD N+V+M VGNK+DLRHL AV TD+ +AFAERE+ +F+ETSALES NV+NAF EVLTQIY +V ++++E GDD + P KG+ INI +DDVSAVKK GCCS Sbjct: 75 RYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLKELRDHTDPNIVVMLVGNKSDLRHLVAVQTDEGKAFAERESLYFMETSALESTNVENAFAEVLTQIYRIVSKRSVEAGDDAGSGPGKGEKINI--KDDVSAVKKGGCCSG 217 HSP 2 Score: 137.117 bits (344), Expect = 2.092e-35 Identity = 65/77 (84.42%), Postives = 71/77 (92.21%), Query Frame = 1 Query: 7 AYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERLPLLS 237 YRA+DDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS+ VD K+VKAQIWDTAGQER ++ Sbjct: 4 GYRAEDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLQVDGKVVKAQIWDTAGQERYRAIT 80
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RAA1D_ARATH (Ras-related protein RABA1d OS=Arabidopsis thaliana OX=3702 GN=RABA1D PE=2 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 4.049e-65 Identity = 104/144 (72.22%), Postives = 123/144 (85.42%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPAALP-KGQTINIGGRDDVSAVKKAGCCS 2407 RYRAITSAYYRGAVGALLVYDVTRH TFENVERWL+ELRDHTD N+V+M VGNK+DLRHL AV T+DA++FAE E+ +F+ETSALES NV+NAF+EVLTQIYHVV +K +E G+D +P KG+ I++ DVSAVKK GCCS Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRHSTFENVERWLRELRDHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAENESLYFMETSALESTNVENAFSEVLTQIYHVVSKKAMEAGEDSGNVPSKGEKIDV----DVSAVKKTGCCS 213 HSP 2 Score: 141.354 bits (355), Expect = 7.596e-37 Identity = 65/74 (87.84%), Postives = 72/74 (97.30%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER 222 M YRADDDYDYLFKVVLIGDSGVGKSNLLSRFT+NEFSLESKSTIGVEFATRS++V++K++KAQIWDTAGQER Sbjct: 1 MAGYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTRNEFSLESKSTIGVEFATRSLNVNEKVIKAQIWDTAGQER 74
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: YPT3_NICPL (Ras-related protein YPT3 OS=Nicotiana plumbaginifolia OX=4092 GN=YPT3 PE=2 SV=1) HSP 1 Score: 215.312 bits (547), Expect = 1.664e-63 Identity = 103/147 (70.07%), Postives = 123/147 (83.67%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPA---ALPKGQTINIGGRDDVSAVKKAGCCSA 2410 RYRAITSAYYRGAVGALLVYDVTRHVT+ENV RWLKELRDHTD N+V+M +GNK+DLRHL AVSTD+A+ AERE +F+ETSALE+ NV+NAFTE LTQIY +V +K +E GD+ A A PKG+TINI +D+ S+ KK GCCS+ Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRHVTYENVTRWLKELRDHTDPNIVVMLIGNKSDLRHLVAVSTDEAKGLAEREGLYFMETSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSSAPPKGETINI--KDEGSSWKKFGCCSS 218 HSP 2 Score: 137.887 bits (346), Expect = 1.325e-35 Identity = 70/110 (63.64%), Postives = 87/110 (79.09%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQERLPLLSLISFYFSCNCLVGNLVIRNA*RVFVGLNFSR 330 M YRADD+YDYLFK+VLIGDSGVGKSNLLSRFTKNEF+LESKSTIGVEFAT+S+++D+K++KAQIWDTAGQER ++ S Y+ VG L++ + R N +R Sbjct: 1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDNKVIKAQIWDTAGQERYR--AITSAYY--RGAVGALLVYDVTRHVTYENVTR 106
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Match: RAA1C_ARATH (Ras-related protein RABA1c OS=Arabidopsis thaliana OX=3702 GN=RABA1C PE=1 SV=1) HSP 1 Score: 212.616 bits (540), Expect = 1.416e-62 Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = 2 Query: 1979 RYRAITSAYYRGAVGALLVYDVTRHVTFENVERWLKELRDHTDANVVIMFVGNKADLRHLRAVSTDDARAFAERENTFFVETSALESLNVDNAFTEVLTQIYHVVCRKTLEIGDDPAALP-KGQTINIGGRDDVSAVKKAGCCS 2407 RYRAITSAYYRGAVGALLVYDVTRH TFENVE WLKELR+HTD N+V+M VGNK+DLRHL AV T+DA++FAE+E+ +F+ETSALE+ NV+NAF EVLTQI+H+V +K +E + A +P KG I+IG DVSAVKK GCCS Sbjct: 74 RYRAITSAYYRGAVGALLVYDVTRHSTFENVETWLKELRNHTDPNIVVMLVGNKSDLRHLVAVQTEDAKSFAEKESLYFMETSALEATNVENAFAEVLTQIHHIVSKKAMEAASESANVPSKGDKIDIG--KDVSAVKKGGCCS 215 HSP 2 Score: 144.05 bits (362), Expect = 8.025e-38 Identity = 67/74 (90.54%), Postives = 72/74 (97.30%), Query Frame = 1 Query: 1 MGAYRADDDYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSIHVDDKIVKAQIWDTAGQER 222 M YRADD+YDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRS++VDDK++KAQIWDTAGQER Sbjct: 1 MAGYRADDEYDYLFKVVLIGDSGVGKSNLLSRFTKNEFSLESKSTIGVEFATRSLNVDDKVIKAQIWDTAGQER 74 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_19683 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_19683_La_Tanjil_v1.0 ID=rna-TanjilR_19683_La_Tanjil_v1.0; Name=rna-TanjilR_19683; organism=Lupinus angustifolius; type=mRNA; length=2413bpback to top protein sequence of rna-TanjilR_19683_La_Tanjil_v1.0 >rna-TanjilR_19683_La_Tanjil_v1.0 ID=rna-TanjilR_19683_La_Tanjil_v1.0; Name=rna-TanjilR_19683_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=217bpback to top mRNA from alignment at Chr_LG13-CM007373.1:4040903..4043315+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_19683_La_Tanjil_v1.0 ID=rna-TanjilR_19683_La_Tanjil_v1.0; Name=rna-TanjilR_19683; organism=Lupinus angustifolius; type=mRNA; length=2413bp; location=Sequence derived from: Chr_LG13-CM007373.1:4040903..4043315+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG13-CM007373.1:4040903..4043315+ >rna-TanjilR_19683_La_Tanjil_v1.0 ID=rna-TanjilR_19683_La_Tanjil_v1.0; Name=rna-TanjilR_19683; organism=Lupinus angustifolius; type=CDS; length=654bp; location=Sequence derived from: Chr_LG13-CM007373.1:4040903..4043315+ (Lupinus angustifoliusback to top |