rna-TanjilR_16756

Transcript Overview
Namerna-TanjilR_16756
Unique Namerna-TanjilR_16756_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length783
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG14-CM007374.1supercontigChr_LG14-CM007374.1:2270641..2271423 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL022Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananL191Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR265Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR273Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0380Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0391Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0340Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0351Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0379Cajanus cajan Asha genome v1.0Cajanus cajan
anccR0393Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0406Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0412Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0289Pisum sativum Cameor genome v1aPisum sativum
anpsR0308Pisum sativum Cameor genome v1aPisum sativum
anpvR0360Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0367Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0369Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0380Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0303Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0305Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0357Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0367Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0374Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anasR0397Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0326Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0349Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0330Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0354Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0330Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0354Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0311Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0337Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0343Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0283Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0288Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvuaR0296Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0371Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0311Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0380Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0303Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
ancanR0314Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0341Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0348Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0357Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0340Cicer arietinum
ancarR0348Cicer arietinum
anccaR0277Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0289Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0314Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0343Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0372Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0380Vigna umbellata FF25 genome v1.0Vigna umbellata
anvumR0383Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0338Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvvaR0370Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0352Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0352Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvasR0376Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0383Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0387Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0387Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvstR0389Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anpvfR0362Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0289Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anvunR0291Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0372Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0375Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0390Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anpvfR0403Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
Cr_14980.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
jg28507.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Vfaba.Hedin2.R1.6g148560.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
XM_058879763.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Vfaba.Tiffany.R1.6g113160.1Vicia faba cv. Tiffany genome v1.0Vicia faba
rna-XM_004504065.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Ca_09576Cicer arietinum CDC Frontier genome v1.0Cicer arietinum

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_31339Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_16756gene-TanjilG_16756_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_16756rna-TanjilR_16756_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_16756_La_Tanjil_v1.0rna-TanjilR_16756_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_16756_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:2270641..2271423rna-TanjilR_16756_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:2270641..2271423Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_16756_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:2270641..2271423rna-TanjilR_16756_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:2270641..2271423Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_16756 vs. DB:Swiss
Match: NHL13_ARATH (NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana OX=3702 GN=NHL13 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.476e-15
Identity = 62/227 (27.31%), Postives = 110/227 (48.46%), Query Frame = 1 
Query:   97 QTYIVQFQKDQVYRVPSYENALLIERDRNSPSATNKER-QCCPHXXXXXXXXXXXXXXXXXXXXXXXYFIFTPNTKPTFSISNFVV----INPIDKISQPHYLISLMAKNPNKRLGIEYQKDANVLLLFEKTKVAIGKFPRLELNPNDSNKVMVDLIGTNGPFPHSMKTNMNDRKYNTLVPMDLEMKINVKTKASHLGTWVEKCNVGCMFKVRILKNETRVISQECQ 762
             TY++Q  KDQ+YR+P  ENA   E+   S   TN+   +CC     +    +  ++++  I+  +LY I+ P   P +SI  F V    +N    IS P + +++ ++N N ++G+ Y+K+++V + +    ++ G  P       +   V + L G+       M+  M +      VP  L++K  VK K   + TW    NV C   V  L   +R++S++C 
Sbjct:   35 STYVIQVPKDQIYRIPPPENAHRFEQL--SRKKTNRSNCRCC---FCSFLAAVFILIVLAGISFAVLYLIYRPEA-PKYSIEGFSVSGINLNSTSPIS-PSFNVTVRSRNGNGKIGVYYEKESSVDVYYNDVDISNGVMPVFYQPAKNVTVVKLVLSGSKIQLTSGMRKEMRNEVSKKTVPFKLKIKAPVKIKFGSVKTWTMIVNVDCDVTVDKLTAPSRIVSRKCS 254
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_16756 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
NHL13_ARATH1.476e-1527.31NDR1/HIN1-like protein 13 OS=Arabidopsis thaliana ... [more]
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_16756_La_Tanjil_v1.0 ID=rna-TanjilR_16756_La_Tanjil_v1.0; Name=rna-TanjilR_16756; organism=Lupinus angustifolius; type=mRNA; length=783bp
ATGGAAGAAGAGTTTCGATGCCACGACACCAACGAAGTCAGACACCAAGT
TGATGTCGTGACATTGTTGCCGCTTTCTCTCGATTGCGAAAAACACCAAA
CTTACATTGTGCAGTTTCAAAAGGATCAAGTTTATCGAGTTCCATCCTAT
GAGAATGCATTGCTCATAGAAAGAGATCGAAATTCTCCTTCCGCGACAAA
CAAAGAACGTCAATGTTGTCCACATATTCTCCTCACCATTGCCCTAATCT
TGCTTGGCATTGTTATCATCATTGCTATAACCATGACTATTTTATACTTT
ATCTTCACCCCAAATACAAAACCAACCTTTTCTATCTCAAACTTTGTGGT
CATTAACCCTATAGATAAAATCTCACAACCTCACTATCTAATATCGTTGA
TGGCCAAGAACCCTAATAAAAGGTTGGGAATAGAGTATCAAAAGGATGCA
AATGTTTTGCTTCTTTTTGAGAAAACTAAGGTGGCAATAGGAAAATTCCC
AAGGTTGGAACTTAATCCAAATGATTCAAACAAGGTCATGGTTGATCTAA
TCGGAACCAATGGACCATTCCCACATTCAATGAAGACAAACATGAATGAT
AGAAAATACAACACTCTCGTTCCGATGGATTTGGAAATGAAAATCAATGT
GAAGACTAAAGCTTCACATTTAGGGACATGGGTTGAGAAGTGCAATGTGG
GGTGTATGTTTAAGGTGAGAATATTGAAGAACGAGACAAGAGTGATATCA
CAAGAATGCCAAACCAATTTCAAACAAAGTTGA
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protein sequence of rna-TanjilR_16756_La_Tanjil_v1.0

>rna-TanjilR_16756_La_Tanjil_v1.0 ID=rna-TanjilR_16756_La_Tanjil_v1.0; Name=rna-TanjilR_16756_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=260bp
MEEEFRCHDTNEVRHQVDVVTLLPLSLDCEKHQTYIVQFQKDQVYRVPSY
ENALLIERDRNSPSATNKERQCCPHILLTIALILLGIVIIIAITMTILYF
IFTPNTKPTFSISNFVVINPIDKISQPHYLISLMAKNPNKRLGIEYQKDA
NVLLLFEKTKVAIGKFPRLELNPNDSNKVMVDLIGTNGPFPHSMKTNMND
RKYNTLVPMDLEMKINVKTKASHLGTWVEKCNVGCMFKVRILKNETRVIS
QECQTNFKQS
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mRNA from alignment at Chr_LG14-CM007374.1:2270641..2271423-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_16756_La_Tanjil_v1.0 ID=rna-TanjilR_16756_La_Tanjil_v1.0; Name=rna-TanjilR_16756; organism=Lupinus angustifolius; type=mRNA; length=783bp; location=Sequence derived from: Chr_LG14-CM007374.1:2270641..2271423- (Lupinus angustifolius
ATGGAAGAAGAGTTTCGATGCCACGACACCAACGAAGTCAGACACCAAGT
TGATGTCGTGACATTGTTGCCGCTTTCTCTCGATTGCGAAAAACACCAAA
CTTACATTGTGCAGTTTCAAAAGGATCAAGTTTATCGAGTTCCATCCTAT
GAGAATGCATTGCTCATAGAAAGAGATCGAAATTCTCCTTCCGCGACAAA
CAAAGAACGTCAATGTTGTCCACATATTCTCCTCACCATTGCCCTAATCT
TGCTTGGCATTGTTATCATCATTGCTATAACCATGACTATTTTATACTTT
ATCTTCACCCCAAATACAAAACCAACCTTTTCTATCTCAAACTTTGTGGT
CATTAACCCTATAGATAAAATCTCACAACCTCACTATCTAATATCGTTGA
TGGCCAAGAACCCTAATAAAAGGTTGGGAATAGAGTATCAAAAGGATGCA
AATGTTTTGCTTCTTTTTGAGAAAACTAAGGTGGCAATAGGAAAATTCCC
AAGGTTGGAACTTAATCCAAATGATTCAAACAAGGTCATGGTTGATCTAA
TCGGAACCAATGGACCATTCCCACATTCAATGAAGACAAACATGAATGAT
AGAAAATACAACACTCTCGTTCCGATGGATTTGGAAATGAAAATCAATGT
GAAGACTAAAGCTTCACATTTAGGGACATGGGTTGAGAAGTGCAATGTGG
GGTGTATGTTTAAGGTGAGAATATTGAAGAACGAGACAAGAGTGATATCA
CAAGAATGCCAAACCAATTTCAAACAAAGTTGA
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Coding sequence (CDS) from alignment at Chr_LG14-CM007374.1:2270641..2271423-

>rna-TanjilR_16756_La_Tanjil_v1.0 ID=rna-TanjilR_16756_La_Tanjil_v1.0; Name=rna-TanjilR_16756; organism=Lupinus angustifolius; type=CDS; length=783bp; location=Sequence derived from: Chr_LG14-CM007374.1:2270641..2271423- (Lupinus angustifolius
ATGGAAGAAGAGTTTCGATGCCACGACACCAACGAAGTCAGACACCAAGT
TGATGTCGTGACATTGTTGCCGCTTTCTCTCGATTGCGAAAAACACCAAA
CTTACATTGTGCAGTTTCAAAAGGATCAAGTTTATCGAGTTCCATCCTAT
GAGAATGCATTGCTCATAGAAAGAGATCGAAATTCTCCTTCCGCGACAAA
CAAAGAACGTCAATGTTGTCCACATATTCTCCTCACCATTGCCCTAATCT
TGCTTGGCATTGTTATCATCATTGCTATAACCATGACTATTTTATACTTT
ATCTTCACCCCAAATACAAAACCAACCTTTTCTATCTCAAACTTTGTGGT
CATTAACCCTATAGATAAAATCTCACAACCTCACTATCTAATATCGTTGA
TGGCCAAGAACCCTAATAAAAGGTTGGGAATAGAGTATCAAAAGGATGCA
AATGTTTTGCTTCTTTTTGAGAAAACTAAGGTGGCAATAGGAAAATTCCC
AAGGTTGGAACTTAATCCAAATGATTCAAACAAGGTCATGGTTGATCTAA
TCGGAACCAATGGACCATTCCCACATTCAATGAAGACAAACATGAATGAT
AGAAAATACAACACTCTCGTTCCGATGGATTTGGAAATGAAAATCAATGT
GAAGACTAAAGCTTCACATTTAGGGACATGGGTTGAGAAGTGCAATGTGG
GGTGTATGTTTAAGGTGAGAATATTGAAGAACGAGACAAGAGTGATATCA
CAAGAATGCCAAACCAATTTCAAACAAAGTTGA
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