Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12382 | rna-TanjilR_12382_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_12382_La_Tanjil_v1.0 | rna-TanjilR_12382_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694051..15694119 | rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694051..15694119 | Lupinus angustifolius | exon |
rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694504..15694680 | rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694504..15694680 | Lupinus angustifolius | exon |
rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694782..15694880 | rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694782..15694880 | Lupinus angustifolius | exon |
rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695231..15695476 | rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695231..15695476 | Lupinus angustifolius | exon |
rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695592..15695894 | rna-TanjilR_12382_La_Tanjil_v1.0-exon-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695592..15695894 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694051..15694119 | rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694051..15694119 | Lupinus angustifolius | CDS |
rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694504..15694680 | rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694504..15694680 | Lupinus angustifolius | CDS |
rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694782..15694880 | rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15694782..15694880 | Lupinus angustifolius | CDS |
rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695231..15695476 | rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695231..15695476 | Lupinus angustifolius | CDS |
rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695592..15695894 | rna-TanjilR_12382_La_Tanjil_v1.0-CDS-Chr_LG14-CM007374.1_La_Tanjil_v1.0-1579734366:15695592..15695894 | Lupinus angustifolius | CDS |
Homology
BLAST of rna-TanjilR_12382 vs. DB:Swiss
Match:
YJX4_SCHPO (CRAL-TRIO domain-containing protein C23B6.04c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC23B6.04c PE=1 SV=1)
HSP 1 Score: 67.781 bits (164), Expect = 9.409e-13
Identity = 41/98 (41.84%), Postives = 55/98 (56.12%), Query Frame = 2
Query: 1148 SKKKTKCMLL----QNTSSIENQIRHLVYLLENAMLNLPPGQEQMSWLIDFTGWSLRSSVPIKSAKETASILQNHYPERLAIAFLYNPPWVFETFWKV 1429
K C+ L QNT + QIRHLV+ LE A+ +PPG E ++ LI+F S RS+ + KE +ILQ HY ERL A + N PW F+K+
Sbjct: 691 DKDGRPCLYLYPARQNTKTSPLQIRHLVFSLECAIDLMPPGVETLALLINFKSSSNRSNPSVGQGKEVLNILQTHYCERLGRALVINIPWAVWGFFKL 788
HSP 2 Score: 28.4906 bits (62), Expect = 9.409e-13
Identity = 14/55 (25.45%), Postives = 28/55 (50.91%), Query Frame = 3
Query: 1539 QIVKYFLDTKTFQKVKFVYPKNKDSMELMNSYFDEENLPKELGGKSKLDYNHEEF 1703
+++ F+D T +K+KF P ++ Y ++ L GG +Y+HE++
Sbjct: 787 KLISPFIDPITREKLKFNEP--------LDRYVPKDQLDSNFGGSLHFEYHHEKY 833
BLAST of rna-TanjilR_12382 vs. DB:Swiss
Match:
PDR16_YEAST (Phosphatidylinositol transfer protein PDR16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PDR16 PE=1 SV=1)
HSP 1 Score: 70.8626 bits (172), Expect = 6.707e-12
Identity = 38/91 (41.76%), Postives = 51/91 (56.04%), Query Frame = 2
Query: 1178 QNTSSIENQIRHLVYLLENAMLNLPPGQEQMSWLIDFTGWSLRSSVP-------IKSAKETASILQNHYPERLAIAFLYNPPWVFETFWKV 1429
QNT + Q++HLV++LE + +P GQ+ ++ LIDF + VP I KE ILQ HYPERL A L N PW+ TF K+
Sbjct: 165 QNTKTSHRQVQHLVFMLERVIDFMPAGQDSLALLIDFKDYPDVPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWLAWTFLKL 255
BLAST of rna-TanjilR_12382 vs. DB:Swiss
Match:
PDR17_YEAST (Phosphatidylinositol transfer protein PDR17 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=PDR17 PE=1 SV=1)
HSP 1 Score: 60.4622 bits (145), Expect = 1.847e-8
Identity = 34/89 (38.20%), Postives = 49/89 (55.06%), Query Frame = 2
Query: 1178 QNTSSIENQIRHLVYLLENAMLNLPPGQEQMSWLIDFT-----GWSLRSSVPIKSAKETASILQNHYPERLAIAFLYNPPWVFETFWKV 1429
QNT S Q++ LVY++E A P G E+++ L+DF G + PI A+ +++Q+HYPERLA L N PW F K+
Sbjct: 169 QNTESSFRQVQELVYMMETATTVAPQGVEKITVLVDFKSYKEPGIITDKAPPISIARMCLNVMQDHYPERLAKCVLINIPWFAWAFLKM 257
BLAST of rna-TanjilR_12382 vs. DB:Swiss
Match:
PITC_DICDI (Phosphatidylinositol transfer protein 3 OS=Dictyostelium discoideum OX=44689 GN=pitC PE=2 SV=1)
HSP 1 Score: 42.743 bits (99), Expect = 2.497e-7
Identity = 26/87 (29.89%), Postives = 47/87 (54.02%), Query Frame = 2
Query: 1175 LQNTSSIENQIRHLVYLLENAM--LNLPPGQEQMSWLIDFTGWSLRSSVPIKSAKETASILQNHYPERLAIAFLYNPPWVFETFWKV 1429
L+N S E + ++LVY LE ++ P G EQ +++D+ + ++ +K+ E L +H PER+ + +PP +F WK+
Sbjct: 146 LKNVPS-ELKFKNLVYWLEQGFSRMDEPKGIEQFCFIVDYKDFG-SGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFAWKI 230
HSP 2 Score: 35.039 bits (79), Expect = 2.497e-7
Identity = 23/61 (37.70%), Postives = 33/61 (54.10%), Query Frame = 3
Query: 1539 QIVKYFLDTKTFQKVKFVYPKNKDS----MELMNSYFDEENLPKELGGKSKLDYNHEEFSK 1709
+I+ FL+ T KV+F+ K D EL+ Y D ENL + LGG +YN +E+ K
Sbjct: 229 KIISPFLNEVTLSKVRFINSKKVDGKRTFAELL-EYVDIENLEQNLGGNLDYNYNIDEYLK 288
The following BLAST results are available for this feature:
Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_12382_La_Tanjil_v1.0 ID=rna-TanjilR_12382_La_Tanjil_v1.0; Name=rna-TanjilR_12382; organism=Lupinus angustifolius; type=mRNA; length=1844bp
ATGTTTCACCGCAAGAGTAATTCACAGCATGAAAACGAAGGTCACGAGCA
GCTTCAGAACGAATCCAAGGTATCGAGTTGAGTTTGTTTTGCTTTGCTTT
GCCGTGGCGGTTTTGAATTGCGGTTCACAACTGCGGCCACATTGATCGCA
TATTCCCGCAATTGTCCTTAATCGGACTCGATACGATGAAATTGCGGCCA
TGACCGTAACCGCTATTTAAAACCTAAGATGTAAAAAAAAGTGGCCTAAT
ACACGAGACTCTCACTTAGTGGGTTTGGAGATTATATCTGTACGCAGTCT
GACCCCGGCAAACAGACACATTGTTTACGGGATTTGAAACCATGACCTCA
TCGTCACTAAGTAGCAACAACTTTAATGTTGCATCAAACTCACCTTTTAG
ATGTAAATATGTGATATTAAGGTTTGTGctgaatatgaaaattgtatgtG
CAGATTAAAGAGCTTGAGGATGCAATTGGACCCTTATCTGGGAACAGCTT
AAAGTACTGCACTGCTGCTTGTTTGAGGAGATATCTGGAAGCTCGCAACT
GGAATGTAGACAAGTCCAAGAAGATGTTGGAGGACACACTCAGGTGGAGA
TCAACCTATAAGCCCGAGTATATCCGCTGGGTAAGCTTTGCTTTGTAATT
TGTAGTATTTGGTCCCTGTATTTGGTGATTTGATGTTATATCATATGGTC
TGAAATGCTGTGAGGTAATGTCATTTCTCAGAATGAGGTTGCTGGGGAAG
GAGAGACCGGAAAACTGTACAGAGCAAATTTTCATGACCGACAAGGAAGG
ACAGTTCTTATATTGAGGCCTGGAAAGCAGGTACCGTAGTTTTGACATTT
TACTTTCACATTAATTTCCGAAGAGTTCTTGTGTGAGCTAAATAATTGCT
GGTCCGGTGTTTTCAACTAGAGTCTGCCAAACCGAATCTGgtgaatgaat
tgaataattcTTTTTACTAATGGGTGTGTATTAACTTAGCTGTAgcatta
ataatgtaatagAAATGGGAAACAAACAGTTATGGCTCACATAGCAGAGA
TGGTACATATCATAATCAGAAAATTTTCTTGTTCCATGAGCATGCACTAT
GTTTGCCCATTTACTATTTCATAATGTTGTCGAGCTACAATGAGGTCtca
aaaaagaaaactaaatgTATGTTGTTGCAGAACACATCTTCAATTGAGAA
TCAGATTCGGCATCTGGTGTATCTTCTGGAAAATGCTATGCTTAACCTTC
CACCAGGTCAGGAACAAATGTCATGGTTAATAGACTTCACTGGATGGTCA
TTGAGAAGCAGTGTGCCCATTAAATCAGCCAAAGAGACTGCCAGCATCTT
ACAGAACCACTATCCCGAGAGGCTTGCCATAGCATTTCTTTACAACCCCC
CTTGggtttttgaaactttttggaAGGTTTGTAATCTCTGCTAGCATCTG
TAAAATCTTCCTTGCCCCAATGATCACTAAAATTGGTAGTGATCCCATTT
AAGTACTTAAGAAGTTACCGGTTCTACTTATCTTAATGCAGATAGTGAAG
TATTTCTTGGATACTAAGACATTTCAGAAGGTGAAGTTTGTTTACCCCAA
AAACAAAGATAGTATGGAGCTCATGAATTCTTATTTTGATGAGGAGAATC
TACCCAAAGAACTAGGAGGAAAAAGCAAATTGGACTACAACCATGAGGAA
TTTTCCAAATTAATGACTCAGGATGATTTGAAATCTGCAGCCTTTTGGGG
ATCTGATGACAAGCTCCCAAGCTACGTTGGTAACGGGCGTTCGGGAGCAG
AGGTAGCCCCAGATCCAGCTTGCCATGAAACTGCGGCGACCTGA
back to topprotein sequence of rna-TanjilR_12382_La_Tanjil_v1.0
>rna-TanjilR_12382_La_Tanjil_v1.0 ID=rna-TanjilR_12382_La_Tanjil_v1.0; Name=rna-TanjilR_12382_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=297bp
MFHRKSNSQHENEGHEQLQNESKIKELEDAIGPLSGNSLKYCTAACLRRY
LEARNWNVDKSKKMLEDTLRWRSTYKPEYIRWNEVAGEGETGKLYRANFH
DRQGRTVLILRPGKQNTSSIENQIRHLVYLLENAMLNLPPGQEQMSWLID
FTGWSLRSSVPIKSAKETASILQNHYPERLAIAFLYNPPWVFETFWKIVK
YFLDTKTFQKVKFVYPKNKDSMELMNSYFDEENLPKELGGKSKLDYNHEE
FSKLMTQDDLKSAAFWGSDDKLPSYVGNGRSGAEVAPDPACHETAAT
back to topmRNA from alignment at Chr_LG14-CM007374.1:15694051..15695894+
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_12382_La_Tanjil_v1.0 ID=rna-TanjilR_12382_La_Tanjil_v1.0; Name=rna-TanjilR_12382; organism=Lupinus angustifolius; type=mRNA; length=1844bp; location=Sequence derived from: Chr_LG14-CM007374.1:15694051..15695894+ (Lupinus angustifolius
ATGTTTCACCGCAAGAGTAATTCACAGCATGAAAACGAAGGTCACGAGCA
GCTTCAGAACGAATCCAAGGTATCGAGTTGAGTTTGTTTTGCTTTGCTTT
GCCGTGGCGGTTTTGAATTGCGGTTCACAACTGCGGCCACATTGATCGCA
TATTCCCGCAATTGTCCTTAATCGGACTCGATACGATGAAATTGCGGCCA
TGACCGTAACCGCTATTTAAAACCTAAGATGTAAAAAAAAGTGGCCTAAT
ACACGAGACTCTCACTTAGTGGGTTTGGAGATTATATCTGTACGCAGTCT
GACCCCGGCAAACAGACACATTGTTTACGGGATTTGAAACCATGACCTCA
TCGTCACTAAGTAGCAACAACTTTAATGTTGCATCAAACTCACCTTTTAG
ATGTAAATATGTGATATTAAGGTTTGTGctgaatatgaaaattgtatgtG
CAGATTAAAGAGCTTGAGGATGCAATTGGACCCTTATCTGGGAACAGCTT
AAAGTACTGCACTGCTGCTTGTTTGAGGAGATATCTGGAAGCTCGCAACT
GGAATGTAGACAAGTCCAAGAAGATGTTGGAGGACACACTCAGGTGGAGA
TCAACCTATAAGCCCGAGTATATCCGCTGGGTAAGCTTTGCTTTGTAATT
TGTAGTATTTGGTCCCTGTATTTGGTGATTTGATGTTATATCATATGGTC
TGAAATGCTGTGAGGTAATGTCATTTCTCAGAATGAGGTTGCTGGGGAAG
GAGAGACCGGAAAACTGTACAGAGCAAATTTTCATGACCGACAAGGAAGG
ACAGTTCTTATATTGAGGCCTGGAAAGCAGGTACCGTAGTTTTGACATTT
TACTTTCACATTAATTTCCGAAGAGTTCTTGTGTGAGCTAAATAATTGCT
GGTCCGGTGTTTTCAACTAGAGTCTGCCAAACCGAATCTGgtgaatgaat
tgaataattcTTTTTACTAATGGGTGTGTATTAACTTAGCTGTAgcatta
ataatgtaatagAAATGGGAAACAAACAGTTATGGCTCACATAGCAGAGA
TGGTACATATCATAATCAGAAAATTTTCTTGTTCCATGAGCATGCACTAT
GTTTGCCCATTTACTATTTCATAATGTTGTCGAGCTACAATGAGGTCtca
aaaaagaaaactaaatgTATGTTGTTGCAGAACACATCTTCAATTGAGAA
TCAGATTCGGCATCTGGTGTATCTTCTGGAAAATGCTATGCTTAACCTTC
CACCAGGTCAGGAACAAATGTCATGGTTAATAGACTTCACTGGATGGTCA
TTGAGAAGCAGTGTGCCCATTAAATCAGCCAAAGAGACTGCCAGCATCTT
ACAGAACCACTATCCCGAGAGGCTTGCCATAGCATTTCTTTACAACCCCC
CTTGggtttttgaaactttttggaAGGTTTGTAATCTCTGCTAGCATCTG
TAAAATCTTCCTTGCCCCAATGATCACTAAAATTGGTAGTGATCCCATTT
AAGTACTTAAGAAGTTACCGGTTCTACTTATCTTAATGCAGATAGTGAAG
TATTTCTTGGATACTAAGACATTTCAGAAGGTGAAGTTTGTTTACCCCAA
AAACAAAGATAGTATGGAGCTCATGAATTCTTATTTTGATGAGGAGAATC
TACCCAAAGAACTAGGAGGAAAAAGCAAATTGGACTACAACCATGAGGAA
TTTTCCAAATTAATGACTCAGGATGATTTGAAATCTGCAGCCTTTTGGGG
ATCTGATGACAAGCTCCCAAGCTACGTTGGTAACGGGCGTTCGGGAGCAG
AGGTAGCCCCAGATCCAGCTTGCCATGAAACTGCGGCGACCTGA
back to topCoding sequence (CDS) from alignment at Chr_LG14-CM007374.1:15694051..15695894+
>rna-TanjilR_12382_La_Tanjil_v1.0 ID=rna-TanjilR_12382_La_Tanjil_v1.0; Name=rna-TanjilR_12382; organism=Lupinus angustifolius; type=CDS; length=894bp; location=Sequence derived from: Chr_LG14-CM007374.1:15694051..15695894+ (Lupinus angustifolius
ATGTTTCACCGCAAGAGTAATTCACAGCATGAAAACGAAGGTCACGAGCA
GCTTCAGAACGAATCCAAGATTAAAGAGCTTGAGGATGCAATTGGACCCT
TATCTGGGAACAGCTTAAAGTACTGCACTGCTGCTTGTTTGAGGAGATAT
CTGGAAGCTCGCAACTGGAATGTAGACAAGTCCAAGAAGATGTTGGAGGA
CACACTCAGGTGGAGATCAACCTATAAGCCCGAGTATATCCGCTGGAATG
AGGTTGCTGGGGAAGGAGAGACCGGAAAACTGTACAGAGCAAATTTTCAT
GACCGACAAGGAAGGACAGTTCTTATATTGAGGCCTGGAAAGCAGAACAC
ATCTTCAATTGAGAATCAGATTCGGCATCTGGTGTATCTTCTGGAAAATG
CTATGCTTAACCTTCCACCAGGTCAGGAACAAATGTCATGGTTAATAGAC
TTCACTGGATGGTCATTGAGAAGCAGTGTGCCCATTAAATCAGCCAAAGA
GACTGCCAGCATCTTACAGAACCACTATCCCGAGAGGCTTGCCATAGCAT
TTCTTTACAACCCCCCTTGggtttttgaaactttttggaAGATAGTGAAG
TATTTCTTGGATACTAAGACATTTCAGAAGGTGAAGTTTGTTTACCCCAA
AAACAAAGATAGTATGGAGCTCATGAATTCTTATTTTGATGAGGAGAATC
TACCCAAAGAACTAGGAGGAAAAAGCAAATTGGACTACAACCATGAGGAA
TTTTCCAAATTAATGACTCAGGATGATTTGAAATCTGCAGCCTTTTGGGG
ATCTGATGACAAGCTCCCAAGCTACGTTGGTAACGGGCGTTCGGGAGCAG
AGGTAGCCCCAGATCCAGCTTGCCATGAAACTGCGGCGACCTGA
back to top