rna-TanjilR_28918
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_28918 vs. DB:Swiss
Match: GLOX1_ARATH (Aldehyde oxidase GLOX1 OS=Arabidopsis thaliana OX=3702 GN=GLOX1 PE=2 SV=1) HSP 1 Score: 172.555 bits (436), Expect = 1.077e-43 Identity = 99/235 (42.13%), Postives = 130/235 (55.32%), Query Frame = 3 Query: 2400 WEMEYMPEPRLVHNMLILPTSHILFINGAKLGCAGYDNAKNASLEPYLYNPYKRLGTRITILESTNIARMYHSSAILLPDGRVLVGGGNPHGRYLFRNVSYPTELRLQAFIPHYMDKRFNSFRPSNLTIESYGGGKSYGIVYGREFEVRFMVGKFVSNNNEVKFSAYAPPFTTHGLSMNQRMLKLRCKRMVQKISGGWVTAVLEAPPSPHVAPAGYYLLTVVNGAIPSMSEWIQF 3104
W+ E MP R++ + +ILP IL INGAK G +G+ AK + P LY P K LG R L + I R+YHS AI LPDG+VLVGG N + Y F NV YPTELR++ F P Y+D + RP + + I YG+ F+V+ + + V + AP FTTH +SMN R+L L V+ + G APPS +AP GYYLL V +PS+ EWIQ
Sbjct: 387 WKTETMPTSRVMSDTVILPNGEILIINGAKRGSSGWHLAKEPNFAPLLYKPNKPLGQRFKELAPSTIPRVYHSIAIALPDGKVLVGGSNTNNGYQF-NVEYPTELRIEKFSPPYLDPALANMRPRIVNTAT-----PKQIKYGQMFDVKIELKQQNVAKENVMVTMLAPSFTTHSVSMNMRLLMLGINN-VKNVGGDNHQIQAVAPPSGKLAPPGYYLLFAVYNGVPSVGEWIQI 614 HSP 2 Score: 118.627 bits (296), Expect = 3.611e-26 Identity = 80/197 (40.61%), Postives = 113/197 (57.36%), Query Frame = 1 Query: 916 GGYGKGAKRIRYYTPCGKNRQCDWNESKNYLSDERWYASTQTLSNDRAIIVGGRRVFTYEFV-PKMGYGEKSYNLPFLQQTYDKSAKGNNLYPFLHLSSDGNLFIFANRDSILLNPRLNKVIKTFPRIPXXXXXXXXXXXXXVMLPLD---HRDNFQKVEVMVCGGAATGALRNAGKGRFIE-GLRSCGRMVITGIK 1491
GG+ GA RY + C C W E L+ RWY++ TL + I+VGGR YE++ P+ +K Y+ L+QT D + NNLYPF+ L++DGNLFIFAN SILL+P+ NKV+K FP++P G+R+YP S SS +LP+ +V+VCGGA A A + + + L+ C R+ I K
Sbjct: 194 GGFQGGANTARYLSTC---ENCVWIEYPKALAARRWYSTQATLPDGTFIVVGGRDALNYEYILPEGQNNKKLYDSQLLRQTDD--PEENNLYPFVWLNTDGNLFIFANNRSILLSPKTNKVLKEFPQLP-GGARNYPGSASSALLPIRLYVQNPAIIPADVLVCGGAKQDAYFRAERLKIYDWALKDCARLNINSAK 384 HSP 3 Score: 65.855 bits (159), Expect = 1.452e-9 Identity = 37/103 (35.92%), Postives = 51/103 (49.51%), Query Frame = 1 Query: 79 GKWQFLLKNTGVVSMHMALT-YKNTVIMFDEIGAGPSRYPLRKRFGSGRRCTRRAKDLMDSTCFAHSVEYDISANSLRPLRLDTDPWCSSGSFLSNGTILGTG 384
G+W+ +KN+GV +MH L N V +D S+ + G C C+AHSV DI+ ++PL L TD WCSSG NGT++ TG
Sbjct: 96 GQWELFMKNSGVSAMHAILMPLINKVQFYDATIWRISQI----KLPPGVPCHVFDAKKNKVDCWAHSVLVDINTGDIKPLALTTDTWCSSGGLTVNGTLVSTG 194
BLAST of rna-TanjilR_28918 vs. DB:Swiss
Match: GLOX_VITPS (Aldehyde oxidase GLOX OS=Vitis pseudoreticulata OX=231512 GN=GLOX PE=2 SV=1) HSP 1 Score: 159.073 bits (401), Expect = 8.874e-40 Identity = 92/235 (39.15%), Postives = 129/235 (54.89%), Query Frame = 3 Query: 2400 WEMEYMPEPRLVHNMLILPTSHILFINGAKLGCAGYDNAKNASLEPYLYNPYKRLGTRITILESTNIARMYHSSAILLPDGRVLVGGGNPHGRYLFRNVSYPTELRLQAFIPHYMDKRFNSFRPSNLTIESYGGGKSYGIVYGREFEVRFMVGKFVSNNNEVKFSAYAPPFTTHGLSMNQRMLKLRCKRMVQKISGGWVTAVLEAPPSPHVAPAGYYLLTVVNGAIPSMSEWIQF 3104
WEME MP R++ +M++LPT +L INGA+ G G++ A + P LY P + LG R L + RMYHS+A LLPDGRVL+ G NPH Y F +PTELR++AF P Y+ + RP + ES + +G +F+V V V + EV ++ PF TH S QR++KL V + V APP +AP GYY++ VN +PS++ W+Q
Sbjct: 298 WEMEDMPFGRIMGDMVMLPTGDVLIINGAQAGSQGFELASSPCFFPLLYRPNQPLGLRFMTLTPGTVPRMYHSTANLLPDGRVLIAGSNPHYFYKFA-AEFPTELRIEAFSPEYLFADKANIRP--VIDES-----PEMVRFGEQFDVFVSVSLPVVGSMEVNLASA--PFATHSFSQGQRLVKLTVSPTVPDADERY-RIVCTAPPGGKIAPPGYYMMFAVNLGVPSVARWVQL 521 HSP 2 Score: 112.464 bits (280), Expect = 2.215e-24 Identity = 79/190 (41.58%), Postives = 109/190 (57.37%), Query Frame = 1 Query: 916 GGYGKGAKRIRYYTPCGKNRQCDWNESKNY-LSDERWYASTQTLSNDRAIIVGGRRVFTYEFVPKMGYGEKSYNLPFLQQTYDKSAKGNNLYPFLHLSSDGNLFIFANRDSILLNPRLNKVIKTFPRIPXXXXXXXXXXXXXVMLPLDHRDNFQKVEVMVCGGAATGALRNAGKGRFIEGLRSCGRMVIT 1482
GG G K+IR + PCG + CDW E K+ L RWYA+ Q L + IIVGGR + E+ P G + LPFL DK + +NLYP++HL +G+LFIFAN +++ + NKV+ +P + G R+YPS+GSSVML L+ ++ ++VCGGA GA G SCGR+V T
Sbjct: 112 GGDLDGVKKIRKFVPCGPHGFCDWEELKDVELETGRWYATNQILPDGSVIIVGGRAANSVEYYPPRKGG--AVQLPFLSDVEDK--QMDNLYPYVHLLPNGHLFIFANNKAVMYDYTSNKVMLEYPPL-DGGPRNYPSAGSSVMLALE--GDYSMAIIVVCGGAQFGAFIQKSTDTPAHG--SCGRIVAT 292 HSP 3 Score: 92.4337 bits (228), Expect = 4.940e-18 Identity = 45/110 (40.91%), Postives = 65/110 (59.09%), Query Frame = 1 Query: 58 ISLEGSKGKWQFLLKNTGVVSMHMALTYKNTVIMFDEIGAGPSRYPLRKRFGSGRRCTRRAKD-LMDSTCFAHSVEYDISANSLRPLRLDTDPWCSSGSFLSNGTILGTG 384
++L G W+ ++ N G+ SMH A+T TV++ D GPSR L K C KD ++ C+AHSV D++ N +RPL++ TD WCSSG FL +G++L TG
Sbjct: 8 VALADLPGTWELIVPNAGIASMHTAVTRYGTVVLLDRTNIGPSRKMLPKG-----HCRYDPKDEVLKRDCYAHSVILDLNTNKIRPLKILTDTWCSSGQFLPDGSLLQTG 112
BLAST of rna-TanjilR_28918 vs. DB:Swiss
Match: WSCD1_ARTBC (WSC domain-containing protein ARB_07867 OS=Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) OX=663331 GN=ARB_07867 PE=1 SV=1) HSP 1 Score: 128.642 bits (322), Expect = 8.613e-29 Identity = 77/238 (32.35%), Postives = 125/238 (52.52%), Query Frame = 3 Query: 2391 NHKWEMEYMPEPRLVHNMLILPTSHILFINGAKLGCAGYDNAKNASLEPYLYNPYKRLGTRITILESTNIARMYHSSAILLPDGRVLVGGGNPHGRYLFRNVSYPTELRLQAFIPHYMDKRFNSFRPSNLTIESYGGGKSYGIVYGREFEVRFMVGKFVSNNNEVKFSAYAPPFTTHGLSMNQRMLKLRCKRMVQKISGGWVTAVLEAPPSPHVAPAGYYLLTVVNGAIPSMSEWIQF 3104
N +W +E MP R++ M LP L +NGA+ G AG+ A++ +L LY+P K + R++I+ +T IARMYHS AIL+ DGRVLV G +P + +P E R++ F+P Y+ + R TI + K + YG +++++ G N + +K S +THG S R + S + T + APP H P G+++L V++G PS++ +++
Sbjct: 692 NAEWVIERMPSKRVLTCMAGLPDGTFLILNGARKGVAGFGLAEDPNLGAVLYDPSKPVNQRMSIMANTTIARMYHSEAILMADGRVLVSGSDPQ------DPRFPQERRVEVFLPPYI---LSGARRPTFTIAN----KDW--AYGGKYKIKITSG----NQSRIKISLMGMVSSTHGNSFGSRTI-------FPAFSCSFGTCTITAPPDSHTCPPGWFMLFVLDGPTPSVASFVRI 903 HSP 2 Score: 63.5438 bits (153), Expect = 9.194e-9 Identity = 51/181 (28.18%), Postives = 81/181 (44.75%), Query Frame = 1 Query: 907 NLAGGYGKGAKRIRYYTP---CGKNRQCDWNESKN--YLSDERWYASTQTLSNDRAIIVGGRR------VFTYEFVPKMGYGEKSYNLPFLQQTYDKSAKGNNLYPFLHLSSDGNLFIFANRDSILLNPRLNKVIKTFPRIPXXXXXXXXXXX---XXVMLPLDHRDNF-QKVEVMVCGGA 1404
+ G G + +R Y P GK DW+ES + L + RWY + T+SN ++VGG V T E +P++G P L + K NNLYP+L GN+ ++ +L+ R +KT P IPG + M+ L + + + + V++CGG+
Sbjct: 500 TVGGWSGISTEGVRLYWPDGSPGKPGVNDWHESPDDLRLQNGRWYPTAMTMSNGSILVVGGEEGSNGAPVPTLEILPRVG--------PVLFMDWLKRTDPNNLYPYLTPLPGGNILAAYYNEARILDERTFDTVKTLPNIPGAVNNDAGGRTYPLEGTMVLLPQKAPYTEPLGVLICGGS 672
BLAST of rna-TanjilR_28918 vs. DB:Swiss
Match: GLOX_PHACH (Aldehyde oxidase GLOX OS=Phanerochaete chrysosporium OX=5306 GN=GLX PE=1 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.326e-14 Identity = 66/234 (28.21%), Postives = 107/234 (45.73%), Query Frame = 3 Query: 2385 GNNHKWEMEYMPEPRLVHNMLILPTSHILFINGAKLGCA---------GYDNAKNASLEPYLYNPYKRLGTRITI--LESTNIARMYHSSAILLPDGRVLVGGGNPHGRYL---FRNVSYPTELRLQAFIPHYMDKRFNSFRPSNLTIESYGGGKSYGIVYGREFEVRFMVGKFVSNNNEVKFSAYAPPFTTHGLSMNQRMLKLRCKRMVQKISGGWVTAVLEAPPSPHVAPAG 3044
G W++E+M E R++ ++ +P IL NGA G A G NA + L P LY P LG RI+ + +T I RMYHS+ L G +GG NP+ + + +P+ELR++ P +M F S RP+ LT+ + +G++ V + + ++V+ + F++H + R++ M IS + APP+ V P G
Sbjct: 313 GIKAGWQVEHMLEARMMPELVHVPNGQILITNGAGTGFAALSAVADPVGNSNADHPVLTPSLYTPDAPLGKRISNAGMPTTTIPRMYHSTVTLTQQGNFFIGGNNPNMNFTPPGTPGIKFPSELRIETLDPPFM---FRS-RPALLTMPEK-------LKFGQKVTVPITIPSDL-KASKVQVALMDLGFSSHAFHSSARLV-----FMESSISADRKSLTFTAPPNGRVFPPG 529 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28918 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 4 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_28918_La_Tanjil_v1.0 ID=rna-TanjilR_28918_La_Tanjil_v1.0; Name=rna-TanjilR_28918; organism=Lupinus angustifolius; type=mRNA; length=3116bpback to top protein sequence of rna-TanjilR_28918_La_Tanjil_v1.0 >rna-TanjilR_28918_La_Tanjil_v1.0 ID=rna-TanjilR_28918_La_Tanjil_v1.0; Name=rna-TanjilR_28918_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=559bpback to top mRNA from alignment at Chr_LG15-CM007375.1:5753149..5756264- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_28918_La_Tanjil_v1.0 ID=rna-TanjilR_28918_La_Tanjil_v1.0; Name=rna-TanjilR_28918; organism=Lupinus angustifolius; type=mRNA; length=3116bp; location=Sequence derived from: Chr_LG15-CM007375.1:5753149..5756264- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:5753149..5756264- >rna-TanjilR_28918_La_Tanjil_v1.0 ID=rna-TanjilR_28918_La_Tanjil_v1.0; Name=rna-TanjilR_28918; organism=Lupinus angustifolius; type=CDS; length=1680bp; location=Sequence derived from: Chr_LG15-CM007375.1:5753149..5756264- (Lupinus angustifoliusback to top |