rna-TanjilR_00452

Transcript Overview
Namerna-TanjilR_00452
Unique Namerna-TanjilR_00452_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length408
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG15-CM007375.1supercontigChr_LG15-CM007375.1:12741952..12742359 -Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL264Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR295Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0456Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0458Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0391Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0447Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0457Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpsR0325Pisum sativum Cameor genome v1aPisum sativum
anpsR0337Pisum sativum Cameor genome v1aPisum sativum
anvuR0369Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0428Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0399Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0380Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0380Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0362Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0350Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0408Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvssR0429Vicia sativa cv. Studenica genome v1.0Vicia sativa
ancanR0350Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0396Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
anavjR0411Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0384Cicer arietinum
anccaR0341Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvvaR0389Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0415Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvasR0422Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0423Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0350Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0467Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris

Orthologs
Gene/TranscriptAssemblySpecies
evm.model.Chr09.2344Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
Cr_12941.1Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
Vigst.02G130400.01Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
Vigun09g132400.1Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
Va04G042800.1Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
Psat07G0131400-T1Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
rna-KK1_024323Cajanus cajan Asha genome v1.0Cajanus cajan
Cc_v2.0_05456.1Cajanus cajan cv. Asha genome v2.0Cajanus cajan
Vigun09g132400.3Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
XM_058930637.1Vicia villosa cv. AU Merit genome v1.0Vicia villosa
Ca_04108Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
rna-XM_004502774.3Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
Psat5g069200.1Pisum sativum Cameor genome v1aPisum sativum
rna-XM_014644694.2Vigna radiata cv. VC1973A genome v6.0Vigna radiata
jg54151.t1Vicia sativa cv. Studenica genome v1.0Vicia sativa
Ca_14087.1Cicer arietinum ICC 4958 genome v2Cicer arietinum
Vfaba.Hedin2.R1.2g141400.1Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
Vigan.02G180600.01Vigna angularis cv. Shumari genome v1.a1Vigna angularis
Vfaba.Tiffany.R1.2g113600.1Vicia faba cv. Tiffany genome v1.0Vicia faba

Gene/transcripts from the same species that appear to represent the same gene
Gene/TranscriptAssemblySpecies
rna-TanjilR_09560Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
rna-TanjilR_10737Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_00452gene-TanjilG_00452_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_00452rna-TanjilR_00452_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_00452_La_Tanjil_v1.0rna-TanjilR_00452_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_00452_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12742039..12742359rna-TanjilR_00452_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12742039..12742359Lupinus angustifoliusCDS
rna-TanjilR_00452_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12741952..12741957rna-TanjilR_00452_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12741952..12741957Lupinus angustifoliusCDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_00452_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12742039..12742359rna-TanjilR_00452_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12742039..12742359Lupinus angustifoliusexon
rna-TanjilR_00452_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12741952..12741957rna-TanjilR_00452_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:12741952..12741957Lupinus angustifoliusexon


Homology
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BLAST of rna-TanjilR_00452 vs. DB:Swiss
Match: BZP18_ARATH (bZIP transcription factor 18 OS=Arabidopsis thaliana OX=3702 GN=BZIP18 PE=1 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 1.126e-9
Identity = 41/99 (41.41%), Postives = 56/99 (56.57%), Query Frame = 1 
Query:   55 DLVPHDDLLSAYIDSDN-------SESNVQASDARS-KPEDASDGTVDASISKIGRSGHRRSNSVNGPSSSLMEGIKAKKAISPDKLAELWTIDPKRVR 327
            +L   DDL  +Y+D +        +  +   S  RS  P  A +G  +A  S   R  HR S SV+G  SS +E I+AKKA++PDKLAELW +DPKR +
Sbjct:   60 ELGSEDDLFCSYMDIEKLGSGSGSASDSAGPSAPRSDNPFSAENGGAEAGNS---RPRHRHSLSVDG--SSTLESIEAKKAMAPDKLAELWVVDPKRAK 153
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_00452 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
BZP18_ARATH1.126e-941.41bZIP transcription factor 18 OS=Arabidopsis thalia... [more]
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InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 31..46
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 30..85
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 66..81
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_00452_La_Tanjil_v1.0 ID=rna-TanjilR_00452_La_Tanjil_v1.0; Name=rna-TanjilR_00452; organism=Lupinus angustifolius; type=mRNA; length=408bp
ATGCATGGCATGGGATTTCCCTTCGATTCCCCATCGCTCCATTTCCAAGA
TCCGGATTTGGTCCCACACGACGACCTTCTCTCCGCTTACATCGACTCCG
ATAATTCCGAATCCAATGTCCAAGCCTCCGATGCCAGATCCAAACCGGAA
GACGCCAGTGATGGAACCGTTGATGCGTCCATTAGCAAAATCGGAAGGTC
CGGTCACCGGCGAAGCAATTCAGTGAATGGTCCATCGTCGTCGTTGATGG
AAGGGATTAAGGCGAAGAAGGCCATATCACCTGATAAGCTCGCTGAATTG
TGGACCATTGATCCTAAACGAGTAAGAGGTTTCTCTCTCTTCTCCTCATT
CCTTCATATTCTGTATATCACATTACATGATTCTCTTATTCACTCTGTGT
AGGGATGA
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protein sequence of rna-TanjilR_00452_La_Tanjil_v1.0

>rna-TanjilR_00452_La_Tanjil_v1.0 ID=rna-TanjilR_00452_La_Tanjil_v1.0; Name=rna-TanjilR_00452_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=108bp
MHGMGFPFDSPSLHFQDPDLVPHDDLLSAYIDSDNSESNVQASDARSKPE
DASDGTVDASISKIGRSGHRRSNSVNGPSSSLMEGIKAKKAISPDKLAEL
WTIDPKRG
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mRNA from alignment at Chr_LG15-CM007375.1:12741952..12742359-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_00452_La_Tanjil_v1.0 ID=rna-TanjilR_00452_La_Tanjil_v1.0; Name=rna-TanjilR_00452; organism=Lupinus angustifolius; type=mRNA; length=408bp; location=Sequence derived from: Chr_LG15-CM007375.1:12741952..12742359- (Lupinus angustifolius
ATGCATGGCATGGGATTTCCCTTCGATTCCCCATCGCTCCATTTCCAAGA
TCCGGATTTGGTCCCACACGACGACCTTCTCTCCGCTTACATCGACTCCG
ATAATTCCGAATCCAATGTCCAAGCCTCCGATGCCAGATCCAAACCGGAA
GACGCCAGTGATGGAACCGTTGATGCGTCCATTAGCAAAATCGGAAGGTC
CGGTCACCGGCGAAGCAATTCAGTGAATGGTCCATCGTCGTCGTTGATGG
AAGGGATTAAGGCGAAGAAGGCCATATCACCTGATAAGCTCGCTGAATTG
TGGACCATTGATCCTAAACGAGTAAGAGGTTTCTCTCTCTTCTCCTCATT
CCTTCATATTCTGTATATCACATTACATGATTCTCTTATTCACTCTGTGT
AGGGATGA
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Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:12741952..12742359-

>rna-TanjilR_00452_La_Tanjil_v1.0 ID=rna-TanjilR_00452_La_Tanjil_v1.0; Name=rna-TanjilR_00452; organism=Lupinus angustifolius; type=CDS; length=327bp; location=Sequence derived from: Chr_LG15-CM007375.1:12741952..12742359- (Lupinus angustifolius
ATGCATGGCATGGGATTTCCCTTCGATTCCCCATCGCTCCATTTCCAAGA
TCCGGATTTGGTCCCACACGACGACCTTCTCTCCGCTTACATCGACTCCG
ATAATTCCGAATCCAATGTCCAAGCCTCCGATGCCAGATCCAAACCGGAA
GACGCCAGTGATGGAACCGTTGATGCGTCCATTAGCAAAATCGGAAGGTC
CGGTCACCGGCGAAGCAATTCAGTGAATGGTCCATCGTCGTCGTTGATGG
AAGGGATTAAGGCGAAGAAGGCCATATCACCTGATAAGCTCGCTGAATTG
TGGACCATTGATCCTAAACGAGGATGA
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