rna-TanjilR_28467

Transcript Overview


Name	rna-TanjilR_28467
Unique Name	rna-TanjilR_28467_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	4980
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG15-CM007375.1	supercontig	Chr_LG15-CM007375.1:18376369..18381348 -	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL142	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL262	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR287	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR288	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR290	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR300	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR310	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0415	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0452	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0370	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0383	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0410	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0420	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0446	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0477	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0502	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0441	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0319	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0330	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0428	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0433	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0439	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0352	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0357	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0373	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0422	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0449	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0462	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0359	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0365	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0375	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0360	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0370	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0361	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0372	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0361	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0387	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0324	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR0338	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0420	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0354	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0437	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0448	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0330	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0342	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0370	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0386	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0396	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0425	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0364		Cicer arietinum
ancarR0383		Cicer arietinum
ancarR0400		Cicer arietinum
anccaR0336	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0349	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0362	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0394	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0414	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0431	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0405	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0433	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0401	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0405	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0423	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0424	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0439	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0439	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0337	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0442	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0447	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0453	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0354	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Orthologs


Gene/Transcript	Assembly	Species
XM_058888660.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
PvulFLAVERTChr03.1730	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
XM_058929316.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
rna-KK1_012661	Cajanus cajan Asha genome v1.0	Cajanus cajan
Psat5g018520.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vigan.03G147500.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vfaba.Hedin2.R1.1g223880.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigun09g185300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
Ca_15003.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
jg34591.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Ca_12335	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Phvul.009G144700.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Cc_v2.0_06724.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
evm.model.Chr09.1840.3.62113179	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
Cc_v2.0_13705.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
Vigst.03G098700.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vum_02G00898.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vfaba.Tiffany.R1.2g159720.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
Vfaba.Tiffany.R1.1g178080.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
PvulFLAVERTChr08.1001176	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Vigan.02G109600.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
rna-XM_004490405.3	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Va07G029630.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vigst.01G153300.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
LR48_mrnaVigan07g122500	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
Psat05G0058800-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Ca_04975	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
rna-XM_012716017.2	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Phvul.003G287200.2	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
Vum_01G02161.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
rna-KK1_032179	Cajanus cajan Asha genome v1.0	Cajanus cajan
Vum_03G01101.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
Vfaba.Hedin2.R1.2g196800.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Vigst.02G084000.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
rna-XM_014647980.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Ca_11545	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vigan.01G291400.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Phvul.008G183500.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
LR48_mrnaVigan04g200500	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
jg55778.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
Vigun09g185300.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
Va01G065640.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Ca_14958	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Va04G059490.1	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
rna-XM_014644822.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Psat2g064400.1	Pisum sativum Cameor genome v1a	Pisum sativum
PvulFLAVERTChr09.1000879	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Cc_v2.0_11768.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan

Gene/transcripts from the same species that appear to represent the same gene


Gene/Transcript	Assembly	Species
rna-TanjilR_32518	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_25533	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
rna-TanjilR_14951	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_28467	gene-TanjilG_28467_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_28467	rna-TanjilR_28467_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_28467_La_Tanjil_v1.0	rna-TanjilR_28467_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following CDS feature(s) are a part of this mRNA:

The following exon feature(s) are a part of this mRNA:

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_28467 vs.

BLAST of rna-TanjilR_28467 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR029413	Rhamnogalacturonan lyase, domain II	PFAM	PF14686	fn3_3	coord: 396..448 e-value: 8.5E-17 score: 60.7
IPR029413	Rhamnogalacturonan lyase, domain II	CDD	cd10316	RGL4_M	coord: 362..452 e-value: 3.06818E-26 score: 100.401
IPR029411	Rhamnogalacturonan lyase, domain III	PFAM	PF14683	CBM-like	coord: 462..579 e-value: 2.8E-31 score: 108.6
IPR010325	Rhamnogalacturonate lyase	PFAM	PF06045	Rhamnogal_lyase	coord: 24..229 e-value: 4.5E-86 score: 287.7
None	No IPR available	CDD	cd10320	RGL4_N	coord: 28..322 e-value: 1.76749E-64 score: 210.323
IPR011013	Galactose mutarotase-like domain superfamily	SUPERFAMILY	74650	Galactose mutarotase-like	coord: 36..322
IPR013784	Carbohydrate-binding-like fold	SUPERFAMILY	49452	Starch-binding domain-like	coord: 360..450
IPR008979	Galactose-binding-like domain superfamily	SUPERFAMILY	49785	Galactose-binding domain-like	coord: 459..577

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG15-CM007375.1:18376369..18381348-
coding sequence from alignment at Chr_LG15-CM007375.1:18376369..18381348-

mRNA sequence

>rna-TanjilR_28467_La_Tanjil_v1.0 ID=rna-TanjilR_28467_La_Tanjil_v1.0; Name=rna-TanjilR_28467; organism=Lupinus angustifolius; type=mRNA; length=4980bp
ATGAACTTCACCAATCACTTCCTATTGTTGATGTTTCAGTTCATCCTTGT
TTTGGGTCATGCTACTAACCCAGGTTCTTTAACTTCATCTCTTTTACTGT
TTTTCTTCTTCTTTACTAATCGCCCTACATGGTTTTATCTATTTAGACTT
CTGAGAATTTAAGGTTTTATTTCTCCCTATGGAATATTTCAAGGTATACT
AACTACATATTACTTTATCTCCAGGGGTGCAATTGAAAATTCAAGATAAA
TATGTAATCCATTTCAACTAGGGTTTCATCTCTAACTATATATTCCTTCA
TTGTTTAGTATTTAGCAATGTGACTTATATATATATTGCATGTGGTTTTC
TCTCTCTTTGTTTTGCTCAGGTTGTATTAGATAATGGCATAGTTCAGGTT
ACCATAGCAAAACCTGAAGGATATGTCACTGGAATCCAATATAATGGGGT
CGATAATTTGCTAGAAGTTCTGAACAATGAAACTGACAGAGGGTGCGTAA
ATTCAAGCTTTTATTTTAATATTTATAATCGTTCTTCTTATTCTTTTGAT
GTACTAATTAATGTAAGCAATTGAATGTGTGTGGTTTAGGTACTGGGATA
TGGTATGGGATGAAGGTGGTAATAAAACAACAGCAAAAGGAAAAAAGGGA
AAGGGTAAATTTGAAAGGTAACTAAGATTCATGTGAAACCTTGTTATAAT
ATTGTTCCAATGTAGGTAAGTTTGTACCAAATAAATGGTCAATGTTGTAT
ATAGGATGGAAGCCACAAATTTGAAGGTAATAGTGGAAAATGAAGAACAA
GTTGAATTATCATTCACCAGAATTTGGAATTCTTCTCTTGAAGGGAAGCA
TGCACCTCTGAATATTGATAAAAGGTTGTTCTATCACATTTTCTCTCTTT
TGGGGTTTTGTTTTGTGAACAATATTAAAATATATAATTATGTCATTTTT
GTGAGTAGGTATATATTGCTTCGTGGTTCATCTGGGTTCTATACTTATGC
AATTTATGAGCATTTGAAGGAATGGCCAGCGTTTGATATTGACAATACTA
GGATTGCTTTCAAGCTTAGGAAAGACAAGTAGGTAGCATGTCTTTTTGGT
TGTTCCTAGGACTTTGAAAAGAACAATAATTAAAGAACAAAGGCTCTTTT
TTGTCTTCAATTTAAAAACTAATTATCTGATATTTGTTGTGGTATTAAAA
TTGAAAAGGTTCCATTACATGGTGGTAGCAGACAACAGACAAAGATTTAT
GCCTCTGCCTGAGGATCGTGAAAAAGGAAGAGGCCAAATTCTGGATTACC
CAGAAGCTATTCTACTTGTGGATCCAGTGGAACCTGAGTTTAAAGGAGAG
GTAATACTATTTTTAACTTTTGGGTTATCTTTTGATATGAATGAAAAGAT
ACTATAAAAAAATAAATTATCTATAATTGATTAATGTCAAGATTTGTCAA
AGGAAACAAATCTAATATTTGAAAATCAATTTTAAAATATAGGATTTTCT
TTATTGAATTATGCATCATTCTTTTGTTAATTTCTTTTCTAATTGAGATA
CTCTTACCATGTATGAGCGAGTATTCTATGTTTTCGTTTTCTTGAAGAGG
AAAAAAAATATAGCATTTTTTAAAATGTCATTAAATCAGACCATTCATAT
TTACACTTTTTCTATTTCAGTTGGTGAAGAAAATGTAAAAATTAACACTG
ACCACATGCATATTACACTACTTATTCCATTTGGATTTAAACTTGTTTAT
TTGAGGTTTGAGCCACACTTTTATGATGAGCTTCGTTGCTATAATATGGG
TTGACAACTTTTTCTTACTAAAAGATGTAATAATTAACTTCTCTCCTTTA
CTTTTCTTTTCATATTTATATGCATTTTAAAAACATGACAAAATCAAAAG
GAAACAAAATCTTGTCTTTCCATATACCCAACATTATTGCATTTATGAGT
CCCTAGGTTTTAGGTTGTTTATTAATTTTAACTCTCAAATAATTCTTATT
TTGACTCACGAATAAACTAATATTTTATAATTAAACTTTAAAATTATTCA
AATTAAAAAATACTTTTGAATTTCATCTCTAGTTAGTGGTTTTGGGACGT
TTTTTCATTCGTGAGAAAATGAAAGAAGCCCCAAAATTGAAATGCTGAAA
TTTGTTAATTTTTGTGGACCACTGCGTTAATTTTTGCATTTATTTAAAAT
GTGTTTATCTAGTGGCCTAATATCTCATTTATGCCCTAGACCAAAAGATA
TTTAATTCCAAGAGAAAATATTTATTGGAAGAGACAATCGTACATCTTAA
AATATTTTAATTTCTTACTCATAAAATGTAATATACTCTTAAATTTAAGT
CATATAATATATATAACATTATTAATTGCATGAGTATAAATCTTTACATT
GTTAATGTACAGATTTTACACTCTTATAATTATGTCAGGTTGACGATAAA
TATCAATATTCTTGTGAGAGTAGAAACAATGGGGTTCATGGCTGGATATC
CTCGAACTCATCTCAACCCACTGGTTTCTGGTTAATTACACCAAGCCCTG
AATTCAGATCTGCTGGCCCCCTCAAACAATACATTGCTTCTCACGTTGGC
CCCACTTCTCTTTCTGTAAGTTTTCCATTTAAATACTTTTTTACCTAATG
TTTTAAAATTTCTCTTCATTAAATCCATTCGTTCATTCATTTAAAAAAGT
GATGATTTGGGAAACGATATCAGGTATTTCATAGCACGCATTATTCGGGA
TTAGATTTGCTAATGAAATTTGGACCTAATGAGCCATGGAAGAAAGTTTA
TGGGCCCATATTCATTTACCTTAATTCTCTACATAATGGGGAAAGCCCAA
CTACCCTATGGAAGGACGCTAAACAACAGGTTCCAACACTTTATTATCTT
TTGTTTGTTGTTATAATAATCAATCATTTATTCTCTCCATATCATTCTTA
ATCAAAAGAAATATAAATAAAAATTGTAGATGGTAAATGAAGTTGAGAGT
TGGCCCTATACATTTCCAGCTTCAGAGGAATTCCTCTCGTCTAAGCAACG
AGGTAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGGTATTTTTCATATG
CTTAACTACCTTACGTTTCTTAAATCCTCCCATAAATGTCACTCCTAAAG
TACTTATATTATTTTGTTATATATGTTATGATATAAGATAATTTATAGAT
AAATGTATCATATTTTTATTGCTTTTGCTTGCAGTAAGATAGTACTGAAC
TAATAGAACTTATATAGTGAACAACTTATCAAGGAACTATGAATACTCTA
AAACAGTAGCATACTCAGATGTGTACGAGAGACAATGTGTCCTTGTTGGA
CATGTATTTGTTGTACCCAATAATTTCTAACACTTATATTTATGCTCTAT
TACTTTTAAAATTAACTTTTTAAGTCTTTATATAGATGAATGTAACAAAT
TTTAATAGCTAAATAAATGTTAGCATTATTAAAATAACAAATCATACTAT
ATTCTATATAATTTTTAAAATTGTTGTATCTTATGTTCATCTTATATCCT
ATATTCCATATCTTATTCGTGATTCCTAGCTAATAACTAAATGCACGTAG
GTACAACAAGGATGCATCCATCCCAGTTAGCGGTGGTTATATAGGATTGG
CATCCCCTGGAGATGTTGGATCATGGCAAAGAGAATCAAAGGTTACCTTC
TACCTTATTTAACATATCACATTTGTTGTTCCACAGTTTATGTTACTTCG
TGTGTCATAAACTTATGATTGGTCAGAAAAATACTTAATAATTAAATTTT
AACTTAAACATATTTTTTGACCAATCACAAATTCATAACACATAGAGTAA
GACAACATATGGTCTACCTCTTCTTTCTTGTCCCATTTCCTTTGAAATGA
CAATATTGATCCACATTGGGAAAACATTATTTTTTATTTATTTTCTTACA
GGGTTATCAATTTTGGACCAGTACTGATGATAAAGGCTATTTTTCAATTA
TTAACATACGTCCAGGGAGCTATAATCTCTACTCTTGGGTCACTGGATAC
ATTGGTGATTATAAATATGGTCCCATTATTAACGTAACCGCAGGTCTTAA
AAATTCACCATGCCTTTTTTTTATTGTCCAACTATATGGTACTTTTATTT
CTAAACTCACTCAGAAATTAAATGTGGAACATAGGTTCTGAAATTAATGT
GGGGGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAAA
TAGGCATTCCTGATCGTTCAGCTGCTGAGTTTTACGTTCCTGATCCTAAT
CCCAAATATATTAATAAACTCTATGTTAATCACCCTGACAGGTTAGTTAC
TACTAAATATGATTCTTTTCCACATAAGTGTCACGTACTATATAGTGTAT
ACACTAAGTCAATGCATGTTTGGTTTCCATGTTATTGATTTCTCATCCAA
AATTATTATCACTTCAAACTTCATTTTAGTTAAAAATAAAAATGTTTTGT
GCCTATATACAGGTTTAGACAATATGGCTTGTGGAAGAGATATGCAGATT
TGTATCCAAAAGAAGACCTAGTTTACACTGTTAATGTCAGTGACTACCGA
AAAGATTGGTTTTTTGCTCATGTCTCAAGGTTTCTTTTTGTTTTTCTCTA
TTCTTTTACCAATGCTAATCAATGTCTTCTATTTCATTTTTATGTTTTGC
AATTGAATTTAAATCAGTTTCTAGTGCCTATTTATGAACTGAAAGAACTA
ACATTTTAGAAAACAATGTATTGATTTTATGTTCTACTTAACAGTGTCTG
AACTAGTGTCCTTTTATGTTTTATAGGAAGAAAGATAATAACACATACCA
AGCAACCACATGGAAAATTAATTTCAATCTTGATCAAGTGCATACCAATG
GAACCTATAAGTTGCGAGTGGCTCTGGCATCTATACATCATGCAAATCTA
CAGGTAGAAAACTTTGCATTCATACTTTAA

protein sequence of rna-TanjilR_28467_La_Tanjil_v1.0

>rna-TanjilR_28467_La_Tanjil_v1.0 ID=rna-TanjilR_28467_La_Tanjil_v1.0; Name=rna-TanjilR_28467_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=585bp
MNFTNHFLLLMFQFILVLGHATNPGVQLKIQDKYVVLDNGIVQVTIAKPE
GYVTGIQYNGVDNLLEVLNNETDRGYWDMVWDEGGNKTTAKGKKGKGKFE
RMEATNLKVIVENEEQVELSFTRIWNSSLEGKHAPLNIDKRYILLRGSSG
FYTYAIYEHLKEWPAFDIDNTRIAFKLRKDKFHYMVVADNRQRFMPLPED
REKGRGQILDYPEAILLVDPVEPEFKGEVDDKYQYSCESRNNGVHGWISS
NSSQPTGFWLITPSPEFRSAGPLKQYIASHVGPTSLSVFHSTHYSGLDLL
MKFGPNEPWKKVYGPIFIYLNSLHNGESPTTLWKDAKQQMVNEVESWPYT
FPASEEFLSSKQRGKVQGRLLVRDRYNKDASIPVSGGYIGLASPGDGYQF
WTSTDDKGYFSIINIRPGSYNLYSWVTGYIGDYKYGPIINVTAGSEINVG
ELVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKYINKLYVNHPDRFRQY
GLWKRYADLYPKEDLVYTVNVSDYRKDWFFAHVSRKKDNNTYQATTWKIN
FNLDQVHTNGTYKLRVALASIHHANLQVENFAFIL

mRNA from alignment at Chr_LG15-CM007375.1:18376369..18381348-

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_28467_La_Tanjil_v1.0 ID=rna-TanjilR_28467_La_Tanjil_v1.0; Name=rna-TanjilR_28467; organism=Lupinus angustifolius; type=mRNA; length=4980bp; location=Sequence derived from: Chr_LG15-CM007375.1:18376369..18381348- (Lupinus angustifolius
ATGAACTTCACCAATCACTTCCTATTGTTGATGTTTCAGTTCATCCTTGT
TTTGGGTCATGCTACTAACCCAGGTTCTTTAACTTCATCTCTTTTACTGT
TTTTCTTCTTCTTTACTAATCGCCCTACATGGTTTTATCTATTTAGACTT
CTGAGAATTTAAGGTTTTATTTCTCCCTATGGAATATTTCAAGGTATACT
AACTACATATTACTTTATCTCCAGGGGTGCAATTGAAAATTCAAGATAAA
TATGTAATCCATTTCAACTAGGGTTTCATCTCTAACTATATATTCCTTCA
TTGTTTAGTATTTAGCAATGTGACTTATATATATATTGCATGTGGTTTTC
TCTCTCTTTGTTTTGCTCAGGTTGTATTAGATAATGGCATAGTTCAGGTT
ACCATAGCAAAACCTGAAGGATATGTCACTGGAATCCAATATAATGGGGT
CGATAATTTGCTAGAAGTTCTGAACAATGAAACTGACAGAGGGTGCGTAA
ATTCAAGCTTTTATTTTAATATTTATAATCGTTCTTCTTATTCTTTTGAT
GTACTAATTAATGTAAGCAATTGAATGTGTGTGGTTTAGGTACTGGGATA
TGGTATGGGATGAAGGTGGTAATAAAACAACAGCAAAAGGAAAAAAGGGA
AAGGGTAAATTTGAAAGGTAACTAAGATTCATGTGAAACCTTGTTATAAT
ATTGTTCCAATGTAGGTAAGTTTGTACCAAATAAATGGTCAATGTTGTAT
ATAGGATGGAAGCCACAAATTTGAAGGTAATAGTGGAAAATGAAGAACAA
GTTGAATTATCATTCACCAGAATTTGGAATTCTTCTCTTGAAGGGAAGCA
TGCACCTCTGAATATTGATAAAAGGTTGTTCTATCACATTTTCTCTCTTT
TGGGGTTTTGTTTTGTGAACAATATTAAAATATATAATTATGTCATTTTT
GTGAGTAGGTATATATTGCTTCGTGGTTCATCTGGGTTCTATACTTATGC
AATTTATGAGCATTTGAAGGAATGGCCAGCGTTTGATATTGACAATACTA
GGATTGCTTTCAAGCTTAGGAAAGACAAGTAGGTAGCATGTCTTTTTGGT
TGTTCCTAGGACTTTGAAAAGAACAATAATTAAAGAACAAAGGCTCTTTT
TTGTCTTCAATTTAAAAACTAATTATCTGATATTTGTTGTGGTATTAAAA
TTGAAAAGGTTCCATTACATGGTGGTAGCAGACAACAGACAAAGATTTAT
GCCTCTGCCTGAGGATCGTGAAAAAGGAAGAGGCCAAATTCTGGATTACC
CAGAAGCTATTCTACTTGTGGATCCAGTGGAACCTGAGTTTAAAGGAGAG
GTAATACTATTTTTAACTTTTGGGTTATCTTTTGATATGAATGAAAAGAT
ACTATAAAAAAATAAATTATCTATAATTGATTAATGTCAAGATTTGTCAA
AGGAAACAAATCTAATATTTGAAAATCAATTTTAAAATATAGGATTTTCT
TTATTGAATTATGCATCATTCTTTTGTTAATTTCTTTTCTAATTGAGATA
CTCTTACCATGTATGAGCGAGTATTCTATGTTTTCGTTTTCTTGAAGAGG
AAAAAAAATATAGCATTTTTTAAAATGTCATTAAATCAGACCATTCATAT
TTACACTTTTTCTATTTCAGTTGGTGAAGAAAATGTAAAAATTAACACTG
ACCACATGCATATTACACTACTTATTCCATTTGGATTTAAACTTGTTTAT
TTGAGGTTTGAGCCACACTTTTATGATGAGCTTCGTTGCTATAATATGGG
TTGACAACTTTTTCTTACTAAAAGATGTAATAATTAACTTCTCTCCTTTA
CTTTTCTTTTCATATTTATATGCATTTTAAAAACATGACAAAATCAAAAG
GAAACAAAATCTTGTCTTTCCATATACCCAACATTATTGCATTTATGAGT
CCCTAGGTTTTAGGTTGTTTATTAATTTTAACTCTCAAATAATTCTTATT
TTGACTCACGAATAAACTAATATTTTATAATTAAACTTTAAAATTATTCA
AATTAAAAAATACTTTTGAATTTCATCTCTAGTTAGTGGTTTTGGGACGT
TTTTTCATTCGTGAGAAAATGAAAGAAGCCCCAAAATTGAAATGCTGAAA
TTTGTTAATTTTTGTGGACCACTGCGTTAATTTTTGCATTTATTTAAAAT
GTGTTTATCTAGTGGCCTAATATCTCATTTATGCCCTAGACCAAAAGATA
TTTAATTCCAAGAGAAAATATTTATTGGAAGAGACAATCGTACATCTTAA
AATATTTTAATTTCTTACTCATAAAATGTAATATACTCTTAAATTTAAGT
CATATAATATATATAACATTATTAATTGCATGAGTATAAATCTTTACATT
GTTAATGTACAGATTTTACACTCTTATAATTATGTCAGGTTGACGATAAA
TATCAATATTCTTGTGAGAGTAGAAACAATGGGGTTCATGGCTGGATATC
CTCGAACTCATCTCAACCCACTGGTTTCTGGTTAATTACACCAAGCCCTG
AATTCAGATCTGCTGGCCCCCTCAAACAATACATTGCTTCTCACGTTGGC
CCCACTTCTCTTTCTGTAAGTTTTCCATTTAAATACTTTTTTACCTAATG
TTTTAAAATTTCTCTTCATTAAATCCATTCGTTCATTCATTTAAAAAAGT
GATGATTTGGGAAACGATATCAGGTATTTCATAGCACGCATTATTCGGGA
TTAGATTTGCTAATGAAATTTGGACCTAATGAGCCATGGAAGAAAGTTTA
TGGGCCCATATTCATTTACCTTAATTCTCTACATAATGGGGAAAGCCCAA
CTACCCTATGGAAGGACGCTAAACAACAGGTTCCAACACTTTATTATCTT
TTGTTTGTTGTTATAATAATCAATCATTTATTCTCTCCATATCATTCTTA
ATCAAAAGAAATATAAATAAAAATTGTAGATGGTAAATGAAGTTGAGAGT
TGGCCCTATACATTTCCAGCTTCAGAGGAATTCCTCTCGTCTAAGCAACG
AGGTAAAGTCCAAGGTAGATTGCTTGTCCGAGACAGGTATTTTTCATATG
CTTAACTACCTTACGTTTCTTAAATCCTCCCATAAATGTCACTCCTAAAG
TACTTATATTATTTTGTTATATATGTTATGATATAAGATAATTTATAGAT
AAATGTATCATATTTTTATTGCTTTTGCTTGCAGTAAGATAGTACTGAAC
TAATAGAACTTATATAGTGAACAACTTATCAAGGAACTATGAATACTCTA
AAACAGTAGCATACTCAGATGTGTACGAGAGACAATGTGTCCTTGTTGGA
CATGTATTTGTTGTACCCAATAATTTCTAACACTTATATTTATGCTCTAT
TACTTTTAAAATTAACTTTTTAAGTCTTTATATAGATGAATGTAACAAAT
TTTAATAGCTAAATAAATGTTAGCATTATTAAAATAACAAATCATACTAT
ATTCTATATAATTTTTAAAATTGTTGTATCTTATGTTCATCTTATATCCT
ATATTCCATATCTTATTCGTGATTCCTAGCTAATAACTAAATGCACGTAG
GTACAACAAGGATGCATCCATCCCAGTTAGCGGTGGTTATATAGGATTGG
CATCCCCTGGAGATGTTGGATCATGGCAAAGAGAATCAAAGGTTACCTTC
TACCTTATTTAACATATCACATTTGTTGTTCCACAGTTTATGTTACTTCG
TGTGTCATAAACTTATGATTGGTCAGAAAAATACTTAATAATTAAATTTT
AACTTAAACATATTTTTTGACCAATCACAAATTCATAACACATAGAGTAA
GACAACATATGGTCTACCTCTTCTTTCTTGTCCCATTTCCTTTGAAATGA
CAATATTGATCCACATTGGGAAAACATTATTTTTTATTTATTTTCTTACA
GGGTTATCAATTTTGGACCAGTACTGATGATAAAGGCTATTTTTCAATTA
TTAACATACGTCCAGGGAGCTATAATCTCTACTCTTGGGTCACTGGATAC
ATTGGTGATTATAAATATGGTCCCATTATTAACGTAACCGCAGGTCTTAA
AAATTCACCATGCCTTTTTTTTATTGTCCAACTATATGGTACTTTTATTT
CTAAACTCACTCAGAAATTAAATGTGGAACATAGGTTCTGAAATTAATGT
GGGGGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAAA
TAGGCATTCCTGATCGTTCAGCTGCTGAGTTTTACGTTCCTGATCCTAAT
CCCAAATATATTAATAAACTCTATGTTAATCACCCTGACAGGTTAGTTAC
TACTAAATATGATTCTTTTCCACATAAGTGTCACGTACTATATAGTGTAT
ACACTAAGTCAATGCATGTTTGGTTTCCATGTTATTGATTTCTCATCCAA
AATTATTATCACTTCAAACTTCATTTTAGTTAAAAATAAAAATGTTTTGT
GCCTATATACAGGTTTAGACAATATGGCTTGTGGAAGAGATATGCAGATT
TGTATCCAAAAGAAGACCTAGTTTACACTGTTAATGTCAGTGACTACCGA
AAAGATTGGTTTTTTGCTCATGTCTCAAGGTTTCTTTTTGTTTTTCTCTA
TTCTTTTACCAATGCTAATCAATGTCTTCTATTTCATTTTTATGTTTTGC
AATTGAATTTAAATCAGTTTCTAGTGCCTATTTATGAACTGAAAGAACTA
ACATTTTAGAAAACAATGTATTGATTTTATGTTCTACTTAACAGTGTCTG
AACTAGTGTCCTTTTATGTTTTATAGGAAGAAAGATAATAACACATACCA
AGCAACCACATGGAAAATTAATTTCAATCTTGATCAAGTGCATACCAATG
GAACCTATAAGTTGCGAGTGGCTCTGGCATCTATACATCATGCAAATCTA
CAGGTAGAAAACTTTGCATTCATACTTTAA

Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:18376369..18381348-

>rna-TanjilR_28467_La_Tanjil_v1.0 ID=rna-TanjilR_28467_La_Tanjil_v1.0; Name=rna-TanjilR_28467; organism=Lupinus angustifolius; type=CDS; length=1758bp; location=Sequence derived from: Chr_LG15-CM007375.1:18376369..18381348- (Lupinus angustifolius
ATGAACTTCACCAATCACTTCCTATTGTTGATGTTTCAGTTCATCCTTGT
TTTGGGTCATGCTACTAACCCAGGGGTGCAATTGAAAATTCAAGATAAAT
ATGTTGTATTAGATAATGGCATAGTTCAGGTTACCATAGCAAAACCTGAA
GGATATGTCACTGGAATCCAATATAATGGGGTCGATAATTTGCTAGAAGT
TCTGAACAATGAAACTGACAGAGGGTACTGGGATATGGTATGGGATGAAG
GTGGTAATAAAACAACAGCAAAAGGAAAAAAGGGAAAGGGTAAATTTGAA
AGGATGGAAGCCACAAATTTGAAGGTAATAGTGGAAAATGAAGAACAAGT
TGAATTATCATTCACCAGAATTTGGAATTCTTCTCTTGAAGGGAAGCATG
CACCTCTGAATATTGATAAAAGGTATATATTGCTTCGTGGTTCATCTGGG
TTCTATACTTATGCAATTTATGAGCATTTGAAGGAATGGCCAGCGTTTGA
TATTGACAATACTAGGATTGCTTTCAAGCTTAGGAAAGACAAGTTCCATT
ACATGGTGGTAGCAGACAACAGACAAAGATTTATGCCTCTGCCTGAGGAT
CGTGAAAAAGGAAGAGGCCAAATTCTGGATTACCCAGAAGCTATTCTACT
TGTGGATCCAGTGGAACCTGAGTTTAAAGGAGAGGTTGACGATAAATATC
AATATTCTTGTGAGAGTAGAAACAATGGGGTTCATGGCTGGATATCCTCG
AACTCATCTCAACCCACTGGTTTCTGGTTAATTACACCAAGCCCTGAATT
CAGATCTGCTGGCCCCCTCAAACAATACATTGCTTCTCACGTTGGCCCCA
CTTCTCTTTCTGTATTTCATAGCACGCATTATTCGGGATTAGATTTGCTA
ATGAAATTTGGACCTAATGAGCCATGGAAGAAAGTTTATGGGCCCATATT
CATTTACCTTAATTCTCTACATAATGGGGAAAGCCCAACTACCCTATGGA
AGGACGCTAAACAACAGATGGTAAATGAAGTTGAGAGTTGGCCCTATACA
TTTCCAGCTTCAGAGGAATTCCTCTCGTCTAAGCAACGAGGTAAAGTCCA
AGGTAGATTGCTTGTCCGAGACAGGTACAACAAGGATGCATCCATCCCAG
TTAGCGGTGGTTATATAGGATTGGCATCCCCTGGAGATGGTTATCAATTT
TGGACCAGTACTGATGATAAAGGCTATTTTTCAATTATTAACATACGTCC
AGGGAGCTATAATCTCTACTCTTGGGTCACTGGATACATTGGTGATTATA
AATATGGTCCCATTATTAACGTAACCGCAGGTTCTGAAATTAATGTGGGG
GAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAAATAGG
CATTCCTGATCGTTCAGCTGCTGAGTTTTACGTTCCTGATCCTAATCCCA
AATATATTAATAAACTCTATGTTAATCACCCTGACAGGTTTAGACAATAT
GGCTTGTGGAAGAGATATGCAGATTTGTATCCAAAAGAAGACCTAGTTTA
CACTGTTAATGTCAGTGACTACCGAAAAGATTGGTTTTTTGCTCATGTCT
CAAGGAAGAAAGATAATAACACATACCAAGCAACCACATGGAAAATTAAT
TTCAATCTTGATCAAGTGCATACCAATGGAACCTATAAGTTGCGAGTGGC
TCTGGCATCTATACATCATGCAAATCTACAGGTAGAAAACTTTGCATTCA
TACTTTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR029413	RG-lyase_II
IPR029411	RG-lyase_III
IPR010325	Rhamnogal_lyase
IPR011013	Gal_mutarotase_sf_dom
IPR013784	Carb-bd-like_fold
IPR008979	Galactose-bd-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

Vocabulary: **Molecular Function**
Term	Definition
GO:0030246	carbohydrate binding
GO:0003824	catalytic activity

Search form

rna-TanjilR_28467