Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_28472 | rna-TanjilR_28472_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_28472_La_Tanjil_v1.0 | rna-TanjilR_28472_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18423471..18424034 | rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18423471..18424034 | Lupinus angustifolius | exon |
| rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424269..18424427 | rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424269..18424427 | Lupinus angustifolius | exon |
| rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424540..18424704 | rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424540..18424704 | Lupinus angustifolius | exon |
| rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424999..18425049 | rna-TanjilR_28472_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424999..18425049 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18423471..18424034 | rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18423471..18424034 | Lupinus angustifolius | CDS |
| rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424269..18424427 | rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424269..18424427 | Lupinus angustifolius | CDS |
| rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424540..18424704 | rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424540..18424704 | Lupinus angustifolius | CDS |
| rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424999..18425049 | rna-TanjilR_28472_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18424999..18425049 | Lupinus angustifolius | CDS |
Homology
BLAST of rna-TanjilR_28472 vs. DB:Swiss
Match:
BH093_ARATH (Transcription factor bHLH93 OS=Arabidopsis thaliana OX=3702 GN=BHLH93 PE=1 SV=1)
HSP 1 Score: 83.5741 bits (205), Expect = 6.969e-28
Identity = 39/59 (66.10%), Postives = 51/59 (86.44%), Query Frame = 2
Query: 1061 SLQFKVER-NLDTKVEICCAGKPSLLLSTVKTLEALGLEIQQCAISCFNDFSMQASCTE 1234
S +F+++R + DT+V+ICC+ KP LLLSTV TLE LGLEI+QC ISCF+DFS+QASC+E
Sbjct: 265 SPKFEIDRRDEDTRVDICCSPKPGLLLSTVNTLETLGLEIEQCVISCFSDFSLQASCSE 323 HSP 2 Score: 63.1586 bits (152), Expect = 6.969e-28
Identity = 36/65 (55.38%), Postives = 43/65 (66.15%), Query Frame = 1
Query: 793 SQMDRTSIVGDTIDYMKELLDKINNLQ---QEIDVDAN-----MAGIFKDVKPNEIFIRNSPKVK 963
S+MDRTSI+GD IDYMKELLDKIN LQ QE+ N + G KD+ NE +RNSPK +
Sbjct: 205 SKMDRTSILGDAIDYMKELLDKINKLQDEEQELGNSNNSHHSKLFGDLKDLNANEPLVRNSPKFE 269 HSP 3 Score: 62.7734 bits (151), Expect = 2.286e-9
Identity = 36/40 (90.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query: 448 RAKKLQGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKV 567
++KKL+GQPSKNLMAERRRRKRLNDRLSMLRSIVPKISK+
Sbjct: 168 KSKKLEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKM 207
BLAST of rna-TanjilR_28472 vs. DB:Swiss
Match:
BH061_ARATH (Transcription factor bHLH61 OS=Arabidopsis thaliana OX=3702 GN=BHLH61 PE=2 SV=1)
HSP 1 Score: 80.8777 bits (198), Expect = 8.400e-25
Identity = 38/60 (63.33%), Postives = 50/60 (83.33%), Query Frame = 2
Query: 1061 SLQFKVE-RNLDTKVEICCAGKPSLLLSTVKTLEALGLEIQQCAISCFNDFSMQASCTEV 1237
SL+F+V+ R ++T ++ICC KP L++STV TLE LGLEI+QC ISCF+DFS+QASC EV
Sbjct: 229 SLKFEVDQREVNTHIDICCPTKPGLVVSTVSTLETLGLEIEQCVISCFSDFSLQASCFEV 288 HSP 2 Score: 55.4546 bits (132), Expect = 8.400e-25
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 1
Query: 793 SQMDRTSIVGDTIDYMKELLDKINNLQ---QEIDVDANMAGIFKDVKPNEIFIRNSPK 957
++MDRTSI+GD IDYMKELLDKIN LQ QE+ +++++ + NE +RNS K
Sbjct: 178 TKMDRTSILGDAIDYMKELLDKINKLQEDEQELGSNSHLSTLIT----NESMVRNSLK 231 HSP 3 Score: 60.077 bits (144), Expect = 1.656e-8
Identity = 38/48 (79.17%), Postives = 44/48 (91.67%), Query Frame = 1
Query: 424 ETSLDRNNRAKKLQGQPSKNLMAEXXXXXXLNDRLSMLRSIVPKISKV 567
ET+ R+N KKL+GQPSKNLMAERRRRKRLNDRLS+LRSIVPKI+K+
Sbjct: 135 ETNKKRSN--KKLEGQPSKNLMAERRRRKRLNDRLSLLRSIVPKITKM 180
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28472 vs. DB:Swiss
Analysis Date: 2020-01-28 (
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 2
| Match Name | E-value | Identity | Description | |
|---|
| BH093_ARATH | 6.969e-28 | 66.10 | Transcription factor bHLH93 OS=Arabidopsis thalian... | [more] |
| BH061_ARATH | 8.400e-25 | 63.33 | Transcription factor bHLH61 OS=Arabidopsis thalian... | [more] |
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Sequences
The
following sequences are available for this feature:
mRNA sequence
>rna-TanjilR_28472_La_Tanjil_v1.0 ID=rna-TanjilR_28472_La_Tanjil_v1.0; Name=rna-TanjilR_28472; organism=Lupinus angustifolius; type=mRNA; length=1579bp
atggAGCTCTATGACCATGATTTCTTGGAGGAGTTAATGGCTCTAAGAAG
AGAAACATGGGACACTATTCCAAACACAGAAGAAAATCAGTTATTCTCTA
ATAGTTATAGTTTTGATCAAAACTCTTTACCTTTTCTCCCAAACAACACT
TCTTGTGGTCAAGAATTTCCTCAAAGTTACAACAATGACTACAACACCTT
CAGTGAAATCTATGGCTCATTACTTGATGAACCATCATATTATAACACAT
TTCATATTCCACATAACACCCCTCCATTTCTTGCTCAAGAAGATTTCCCA
TTGTCCCTGATGGAAGAAGTGGATAATACATGTTTGCTTGGTGAAGAGCT
TCAGAATTTGGAACTGCAAACCACATGCAAAATGGATCCAACACAATCAC
CAGAAAAGCCAGTTTTAAACATGGAAACAAGTCTAGATAGAAATAATCGA
GCAAAGAAGCTCCAAGGGCAACCCTCCAAGAATCTTATGGctgaaaggag
aagaagaaagaggtTAAATGACCGCCTCTCTATGCTAAGGTCAATTGTCC
CTAAGATAAGTAAGGTATGCACCATAACCCTATCATAGAGATtcaataaa
gttttatgttgacTATCGAGTAACTGTGTAACAAAACCTTCACATTTTAT
CCGGGCTTAAGACCGACTATGTATAGTATTAAGCATACATAGGTAGGTTT
AGAGTCATTAATTCAATCGTACTAAAAATTACAGAACTACTATAATTTGT
GTTATATGTAGATctaatttgttttgttaaaaTGCTAATTCATCACAGAT
GGACAGAACATCTATTGTTGGAGACACTATTGATTACATGAAAGAGCTTC
TGGACAAGATCAACAACTTGCAACAAGAAATAGATGTAGATGCAAATATG
GCTGGCATTTTCAAAGATGTAAAGCCAAATGAAATCTTCATTAGAAATTC
TCCTAAGGTGAAAAAAATTCCTAATAGTATCACCTACTAAGCATGTGATT
GAAGGGTAGCATTTGTGATCACTTCATTTCTGCATTGGTTTtgtttttaa
catgtttttgtCTTTGCAGTTTAAGGTGGAGAGGAATTTGGACACCAAGG
TTGAAATTTGCTGTGCTGGGAAGCCAAGCTTGTTGCTTTCTACAGTAAAG
ACCCTTGAAGCATTAGGCTTAGAGATTCAACAATGTGCTATTAGCTGTTT
CAATGATTTCTCAATGCAGGCTTCTTGCACTGAGGTACATCAATTAGTAT
CAGAATCATGCATGTTATTTGTACAATAAAGTCTAacaatttatcttttt
attgtGCAAACTTTACTAATTATTCAAACTCGACTTATAAAAATTTGTCA
AGAATTGATGTGCACAAAACATTTTTCTTAGTATCATTAGTTCTTGATGT
GCACAAAACATTAGTTCTTATTTAGttgcaatttttttattcattcatct
tGCCTTTCTAATAGAAATTGGAGCAAAGGACAATGTTGAGTTCTGAAGAT
ATAAAACAAGTATTATTTAGAAGTGCAGGATATGGAGGAAAGTGTTTgtg
agaaaaagaagaagaaagcatTGCAATAG
back to topprotein sequence of rna-TanjilR_28472_La_Tanjil_v1.0
>rna-TanjilR_28472_La_Tanjil_v1.0 ID=rna-TanjilR_28472_La_Tanjil_v1.0; Name=rna-TanjilR_28472_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=312bp
MELYDHDFLEELMALRRETWDTIPNTEENQLFSNSYSFDQNSLPFLPNNT
SCGQEFPQSYNNDYNTFSEIYGSLLDEPSYYNTFHIPHNTPPFLAQEDFP
LSLMEEVDNTCLLGEELQNLELQTTCKMDPTQSPEKPVLNMETSLDRNNR
AKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSIVGDTID
YMKELLDKINNLQQEIDVDANMAGIFKDVKPNEIFIRNSPKFKVERNLDT
KVEICCAGKPSLLLSTVKTLEALGLEIQQCAISCFNDFSMQASCTEDMEE
SVCEKKKKKALQ
back to topmRNA from alignment at Chr_LG15-CM007375.1:18423471..18425049+
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_28472_La_Tanjil_v1.0 ID=rna-TanjilR_28472_La_Tanjil_v1.0; Name=rna-TanjilR_28472; organism=Lupinus angustifolius; type=mRNA; length=1579bp; location=Sequence derived from: Chr_LG15-CM007375.1:18423471..18425049+ (Lupinus angustifolius
atggAGCTCTATGACCATGATTTCTTGGAGGAGTTAATGGCTCTAAGAAG
AGAAACATGGGACACTATTCCAAACACAGAAGAAAATCAGTTATTCTCTA
ATAGTTATAGTTTTGATCAAAACTCTTTACCTTTTCTCCCAAACAACACT
TCTTGTGGTCAAGAATTTCCTCAAAGTTACAACAATGACTACAACACCTT
CAGTGAAATCTATGGCTCATTACTTGATGAACCATCATATTATAACACAT
TTCATATTCCACATAACACCCCTCCATTTCTTGCTCAAGAAGATTTCCCA
TTGTCCCTGATGGAAGAAGTGGATAATACATGTTTGCTTGGTGAAGAGCT
TCAGAATTTGGAACTGCAAACCACATGCAAAATGGATCCAACACAATCAC
CAGAAAAGCCAGTTTTAAACATGGAAACAAGTCTAGATAGAAATAATCGA
GCAAAGAAGCTCCAAGGGCAACCCTCCAAGAATCTTATGGctgaaaggag
aagaagaaagaggtTAAATGACCGCCTCTCTATGCTAAGGTCAATTGTCC
CTAAGATAAGTAAGGTATGCACCATAACCCTATCATAGAGATtcaataaa
gttttatgttgacTATCGAGTAACTGTGTAACAAAACCTTCACATTTTAT
CCGGGCTTAAGACCGACTATGTATAGTATTAAGCATACATAGGTAGGTTT
AGAGTCATTAATTCAATCGTACTAAAAATTACAGAACTACTATAATTTGT
GTTATATGTAGATctaatttgttttgttaaaaTGCTAATTCATCACAGAT
GGACAGAACATCTATTGTTGGAGACACTATTGATTACATGAAAGAGCTTC
TGGACAAGATCAACAACTTGCAACAAGAAATAGATGTAGATGCAAATATG
GCTGGCATTTTCAAAGATGTAAAGCCAAATGAAATCTTCATTAGAAATTC
TCCTAAGGTGAAAAAAATTCCTAATAGTATCACCTACTAAGCATGTGATT
GAAGGGTAGCATTTGTGATCACTTCATTTCTGCATTGGTTTtgtttttaa
catgtttttgtCTTTGCAGTTTAAGGTGGAGAGGAATTTGGACACCAAGG
TTGAAATTTGCTGTGCTGGGAAGCCAAGCTTGTTGCTTTCTACAGTAAAG
ACCCTTGAAGCATTAGGCTTAGAGATTCAACAATGTGCTATTAGCTGTTT
CAATGATTTCTCAATGCAGGCTTCTTGCACTGAGGTACATCAATTAGTAT
CAGAATCATGCATGTTATTTGTACAATAAAGTCTAacaatttatcttttt
attgtGCAAACTTTACTAATTATTCAAACTCGACTTATAAAAATTTGTCA
AGAATTGATGTGCACAAAACATTTTTCTTAGTATCATTAGTTCTTGATGT
GCACAAAACATTAGTTCTTATTTAGttgcaatttttttattcattcatct
tGCCTTTCTAATAGAAATTGGAGCAAAGGACAATGTTGAGTTCTGAAGAT
ATAAAACAAGTATTATTTAGAAGTGCAGGATATGGAGGAAAGTGTTTgtg
agaaaaagaagaagaaagcatTGCAATAG
back to topCoding sequence (CDS) from alignment at Chr_LG15-CM007375.1:18423471..18425049+
>rna-TanjilR_28472_La_Tanjil_v1.0 ID=rna-TanjilR_28472_La_Tanjil_v1.0; Name=rna-TanjilR_28472; organism=Lupinus angustifolius; type=CDS; length=939bp; location=Sequence derived from: Chr_LG15-CM007375.1:18423471..18425049+ (Lupinus angustifolius
atggAGCTCTATGACCATGATTTCTTGGAGGAGTTAATGGCTCTAAGAAG
AGAAACATGGGACACTATTCCAAACACAGAAGAAAATCAGTTATTCTCTA
ATAGTTATAGTTTTGATCAAAACTCTTTACCTTTTCTCCCAAACAACACT
TCTTGTGGTCAAGAATTTCCTCAAAGTTACAACAATGACTACAACACCTT
CAGTGAAATCTATGGCTCATTACTTGATGAACCATCATATTATAACACAT
TTCATATTCCACATAACACCCCTCCATTTCTTGCTCAAGAAGATTTCCCA
TTGTCCCTGATGGAAGAAGTGGATAATACATGTTTGCTTGGTGAAGAGCT
TCAGAATTTGGAACTGCAAACCACATGCAAAATGGATCCAACACAATCAC
CAGAAAAGCCAGTTTTAAACATGGAAACAAGTCTAGATAGAAATAATCGA
GCAAAGAAGCTCCAAGGGCAACCCTCCAAGAATCTTATGGctgaaaggag
aagaagaaagaggtTAAATGACCGCCTCTCTATGCTAAGGTCAATTGTCC
CTAAGATAAGTAAGATGGACAGAACATCTATTGTTGGAGACACTATTGAT
TACATGAAAGAGCTTCTGGACAAGATCAACAACTTGCAACAAGAAATAGA
TGTAGATGCAAATATGGCTGGCATTTTCAAAGATGTAAAGCCAAATGAAA
TCTTCATTAGAAATTCTCCTAAGTTTAAGGTGGAGAGGAATTTGGACACC
AAGGTTGAAATTTGCTGTGCTGGGAAGCCAAGCTTGTTGCTTTCTACAGT
AAAGACCCTTGAAGCATTAGGCTTAGAGATTCAACAATGTGCTATTAGCT
GTTTCAATGATTTCTCAATGCAGGCTTCTTGCACTGAGGATATGGAGGAA
AGTGTTTgtgagaaaaagaagaagaaagcatTGCAATAG
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