rna-TanjilR_28493

Transcript Overview


Name	rna-TanjilR_28493
Unique Name	rna-TanjilR_28493_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	759
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG15-CM007375.1	supercontig	Chr_LG15-CM007375.1:18678872..18679630 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL262	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR300	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0431	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0434	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0381	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0383	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0477	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0459	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0481	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpvR0448	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0454	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0370	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0373	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0422	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0372	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0375	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0370	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0374	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0387	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0372	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0375	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0387	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0357	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0361	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0351	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0420	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvuaR0354	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
ancanR0342	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0396	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0375		Cicer arietinum
ancarR0383		Cicer arietinum
anccaR0336	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0357	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0414	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0405	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0423	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0424	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvunR0351	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0463	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0354	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_28493	gene-TanjilG_28493_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_28493	rna-TanjilR_28493_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_28493_La_Tanjil_v1.0	rna-TanjilR_28493_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907	rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907	Lupinus angustifolius	exon
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111	rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111	Lupinus angustifolius	exon
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299	rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299	Lupinus angustifolius	exon
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630	rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907	rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907	Lupinus angustifolius	CDS
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111	rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111	Lupinus angustifolius	CDS
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299	rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299	Lupinus angustifolius	CDS
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630	rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_28493 vs.

BLAST of rna-TanjilR_28493 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG15-CM007375.1:18678872..18679630+
coding sequence from alignment at Chr_LG15-CM007375.1:18678872..18679630+

mRNA sequence

>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493; organism=Lupinus angustifolius; type=mRNA; length=759bp
ATGTGGTATGAAGTGAAGATATCATATCCAGCTTCTGTATGTACTAagct
ttttttttattatgtcttCTGTTAGTTCTTTGCAATTTATCTTTCCTTTG
GAAACTGACACACATTTAAACACCAGATACCAGCTAGCTTTTCCATAGAA
CTGAAGAGAGACAAGTTGAATATGGTAATCAACAAGAACAGGAGATTACT
CAACACTGAAAAGCTAATTTTCAAGAACTATAGTGACCAGGTCTAATATT
GTTGTGAAAGCTTTTTAGTCCAAATTTTCTGAACTGTATGTGCttaattt
gattatgttttgtttttacaaCATTGACTTAATTCAGGATAAAACCTATG
TGCTAGTAACTGTGAAGCCAGAAGGGTTTCTGGCAAAACCACATGTACCA
GAGAGACAGTTCGTTATCTTTAATATAGGTACTTTTTAGCATAATACATT
AATAATCTTGATATCTCATATTGTGCTTCATTACTGATACGATTAGTATT
CAATGATTATATACTCCATTCTACTGTTGCTATGATTAATTTACTCTGTT
ACTAATATTCTATATTCTATTATTGTTCTGTTGAAAGTGCAGTCTGTGAT
GAACTATTATTAGGCATACCCCACAAAGCTTGGTGGGTCGTGGCACTAGC
ATTAATGGGTCTTGGAATTGCATTCATGGTTCCTTCTTTGCTTCCATCAT
ATTTGCTTCCAAAGAAACAAGTCCTAGGATCAGTTGATAGTGTTTCAAAA
GCCTCATGA

protein sequence of rna-TanjilR_28493_La_Tanjil_v1.0

>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=135bp
MWYEVKISYPASIPASFSIELKRDKLNMVINKNRRLLNTEKLIFKNYSDQ
DKTYVLVTVKPEGFLAKPHVPERQFVIFNIVCDELLLGIPHKAWWVVALA
LMGLGIAFMVPSLLPSYLLPKKQVLGSVDSVSKAS

mRNA from alignment at Chr_LG15-CM007375.1:18678872..18679630+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493; organism=Lupinus angustifolius; type=mRNA; length=759bp; location=Sequence derived from: Chr_LG15-CM007375.1:18678872..18679630+ (Lupinus angustifolius
ATGTGGTATGAAGTGAAGATATCATATCCAGCTTCTGTATGTACTAagct
ttttttttattatgtcttCTGTTAGTTCTTTGCAATTTATCTTTCCTTTG
GAAACTGACACACATTTAAACACCAGATACCAGCTAGCTTTTCCATAGAA
CTGAAGAGAGACAAGTTGAATATGGTAATCAACAAGAACAGGAGATTACT
CAACACTGAAAAGCTAATTTTCAAGAACTATAGTGACCAGGTCTAATATT
GTTGTGAAAGCTTTTTAGTCCAAATTTTCTGAACTGTATGTGCttaattt
gattatgttttgtttttacaaCATTGACTTAATTCAGGATAAAACCTATG
TGCTAGTAACTGTGAAGCCAGAAGGGTTTCTGGCAAAACCACATGTACCA
GAGAGACAGTTCGTTATCTTTAATATAGGTACTTTTTAGCATAATACATT
AATAATCTTGATATCTCATATTGTGCTTCATTACTGATACGATTAGTATT
CAATGATTATATACTCCATTCTACTGTTGCTATGATTAATTTACTCTGTT
ACTAATATTCTATATTCTATTATTGTTCTGTTGAAAGTGCAGTCTGTGAT
GAACTATTATTAGGCATACCCCACAAAGCTTGGTGGGTCGTGGCACTAGC
ATTAATGGGTCTTGGAATTGCATTCATGGTTCCTTCTTTGCTTCCATCAT
ATTTGCTTCCAAAGAAACAAGTCCTAGGATCAGTTGATAGTGTTTCAAAA
GCCTCATGA

Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:18678872..18679630+

>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493; organism=Lupinus angustifolius; type=CDS; length=408bp; location=Sequence derived from: Chr_LG15-CM007375.1:18678872..18679630+ (Lupinus angustifolius
ATGTGGTATGAAGTGAAGATATCATATCCAGCTTCTATACCAGCTAGCTT
TTCCATAGAACTGAAGAGAGACAAGTTGAATATGGTAATCAACAAGAACA
GGAGATTACTCAACACTGAAAAGCTAATTTTCAAGAACTATAGTGACCAG
GATAAAACCTATGTGCTAGTAACTGTGAAGCCAGAAGGGTTTCTGGCAAA
ACCACATGTACCAGAGAGACAGTTCGTTATCTTTAATATAGTCTGTGATG
AACTATTATTAGGCATACCCCACAAAGCTTGGTGGGTCGTGGCACTAGCA
TTAATGGGTCTTGGAATTGCATTCATGGTTCCTTCTTTGCTTCCATCATA
TTTGCTTCCAAAGAAACAAGTCCTAGGATCAGTTGATAGTGTTTCAAAAG
CCTCATGA

Search form

rna-TanjilR_28493