rna-TanjilR_28493

Transcript Overview
Namerna-TanjilR_28493
Unique Namerna-TanjilR_28493_La_Tanjil_v1.0
TypemRNA
OrganismLupinus angustifolius (blue lupin)
Sequence length759
Producthypothetical protein
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
Chr_LG15-CM007375.1supercontigChr_LG15-CM007375.1:18678872..18679630 +Lupinus angustifolius L. Tanjil genome v1.0n/a
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Lupinus angustifolius L. Tanjil genome v1.02019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.02020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot2020-01-28
Orthologs

Syntenic blocks
Syntentic blockAssemblySpecies
ananL262Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ananR300Lupinus angustifolius L. Tanjil genome v1.0Lupinus angustifolius
ancaiR0431Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaiR0434Cicer arietinum ICC 4958 genome v2Cicer arietinum
ancaR0381Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
ancaR0383Cicer arietinum CDC Frontier genome v1.0Cicer arietinum
anccR0477Cajanus cajan Asha genome v1.0Cajanus cajan
ancrR0459Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
ancrR0481Cicer reticulatum L. PI489777 genome v1Cicer reticulatum
anpvR0448Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anpvR0454Phaseolus vulgaris G19833 genome v2.1Phaseolus vulgaris
anvuR0370Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anvuR0373Vigna unguiculata L. Walp IT97K-499-35 genome v1.1Vigna unguiculata
anasR0422Vigna angularis Jingnong 6 genome v1.1Vigna angularis
anzwsR0372Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
anzwsR0375Pisum sativum cv. Zhongwan6 genome v1.0Pisum sativum
antifR0370Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0374Vicia faba cv. Tiffany genome v1.0Vicia faba
antifR0387Vicia faba cv. Tiffany genome v1.0Vicia faba
anvfhR0372Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0375Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvfhR0387Vicia faba inbred line Hedin/2 genome v1.0Vicia faba
anvrvR0357Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvrvR0361Vigna radiata cv. VC1973A genome v6.0Vigna radiata
anvuaR0351Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
anvssR0420Vicia sativa cv. Studenica genome v1.0Vicia sativa
anvuaR0354Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0Vigna unguiculata subsp. sesquipedalis
ancanR0342Cicer arietinum CDC Frontier NCBI RefSeq v1Cicer arietinum
anavjR0396Vigna angularis cv. Jingnong6 genome v1.7.1Vigna angularis
ancarR0375Cicer arietinum
ancarR0383Cicer arietinum
anccaR0336Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anccaR0357Cajanus cajan cv. Asha genome v2.0Cajanus cajan
anvumR0414Vigna umbellata FF25 genome v1.0Vigna umbellata
anvvaR0405Vicia villosa cv. AU Merit genome v1.0Vicia villosa
anvasR0423Vigna angularis cv. Shumari genome v1.a1Vigna angularis
anvstR0424Vigna stipulacea acc. JP252948 genome v2.a1Vigna stipulacea
anvunR0351Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
anpvfR0463Phaseolus vulgaris cv. Flavert genome v1.0Phaseolus vulgaris
anvunR0354Vigna unguiculata L. Walp IT97K-499-35 genome v1.2Vigna unguiculata
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
gene-TanjilG_28493gene-TanjilG_28493_La_Tanjil_v1.0Lupinus angustifoliusgene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28493rna-TanjilR_28493_La_Tanjil_v1.0-proteinLupinus angustifoliuspolypeptide
rna-TanjilR_28493_La_Tanjil_v1.0rna-TanjilR_28493_La_Tanjil_v1.0Lupinus angustifoliuspolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907Lupinus angustifoliusexon
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111Lupinus angustifoliusexon
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299Lupinus angustifoliusexon
rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630rna-TanjilR_28493_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630Lupinus angustifoliusexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678872..18678907Lupinus angustifoliusCDS
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18678998..18679111Lupinus angustifoliusCDS
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679209..18679299Lupinus angustifoliusCDS
rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630rna-TanjilR_28493_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:18679464..18679630Lupinus angustifoliusCDS


Homology
The following BLAST results are available for this feature:
BLAST of rna-TanjilR_28493 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0
Match NameE-valueIdentityDescription
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Sequences
The following sequences are available for this feature:

mRNA sequence

>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493; organism=Lupinus angustifolius; type=mRNA; length=759bp
ATGTGGTATGAAGTGAAGATATCATATCCAGCTTCTGTATGTACTAagct
ttttttttattatgtcttCTGTTAGTTCTTTGCAATTTATCTTTCCTTTG
GAAACTGACACACATTTAAACACCAGATACCAGCTAGCTTTTCCATAGAA
CTGAAGAGAGACAAGTTGAATATGGTAATCAACAAGAACAGGAGATTACT
CAACACTGAAAAGCTAATTTTCAAGAACTATAGTGACCAGGTCTAATATT
GTTGTGAAAGCTTTTTAGTCCAAATTTTCTGAACTGTATGTGCttaattt
gattatgttttgtttttacaaCATTGACTTAATTCAGGATAAAACCTATG
TGCTAGTAACTGTGAAGCCAGAAGGGTTTCTGGCAAAACCACATGTACCA
GAGAGACAGTTCGTTATCTTTAATATAGGTACTTTTTAGCATAATACATT
AATAATCTTGATATCTCATATTGTGCTTCATTACTGATACGATTAGTATT
CAATGATTATATACTCCATTCTACTGTTGCTATGATTAATTTACTCTGTT
ACTAATATTCTATATTCTATTATTGTTCTGTTGAAAGTGCAGTCTGTGAT
GAACTATTATTAGGCATACCCCACAAAGCTTGGTGGGTCGTGGCACTAGC
ATTAATGGGTCTTGGAATTGCATTCATGGTTCCTTCTTTGCTTCCATCAT
ATTTGCTTCCAAAGAAACAAGTCCTAGGATCAGTTGATAGTGTTTCAAAA
GCCTCATGA
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protein sequence of rna-TanjilR_28493_La_Tanjil_v1.0

>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=135bp
MWYEVKISYPASIPASFSIELKRDKLNMVINKNRRLLNTEKLIFKNYSDQ
DKTYVLVTVKPEGFLAKPHVPERQFVIFNIVCDELLLGIPHKAWWVVALA
LMGLGIAFMVPSLLPSYLLPKKQVLGSVDSVSKAS
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mRNA from alignment at Chr_LG15-CM007375.1:18678872..18679630+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493; organism=Lupinus angustifolius; type=mRNA; length=759bp; location=Sequence derived from: Chr_LG15-CM007375.1:18678872..18679630+ (Lupinus angustifolius
ATGTGGTATGAAGTGAAGATATCATATCCAGCTTCTGTATGTACTAagct
ttttttttattatgtcttCTGTTAGTTCTTTGCAATTTATCTTTCCTTTG
GAAACTGACACACATTTAAACACCAGATACCAGCTAGCTTTTCCATAGAA
CTGAAGAGAGACAAGTTGAATATGGTAATCAACAAGAACAGGAGATTACT
CAACACTGAAAAGCTAATTTTCAAGAACTATAGTGACCAGGTCTAATATT
GTTGTGAAAGCTTTTTAGTCCAAATTTTCTGAACTGTATGTGCttaattt
gattatgttttgtttttacaaCATTGACTTAATTCAGGATAAAACCTATG
TGCTAGTAACTGTGAAGCCAGAAGGGTTTCTGGCAAAACCACATGTACCA
GAGAGACAGTTCGTTATCTTTAATATAGGTACTTTTTAGCATAATACATT
AATAATCTTGATATCTCATATTGTGCTTCATTACTGATACGATTAGTATT
CAATGATTATATACTCCATTCTACTGTTGCTATGATTAATTTACTCTGTT
ACTAATATTCTATATTCTATTATTGTTCTGTTGAAAGTGCAGTCTGTGAT
GAACTATTATTAGGCATACCCCACAAAGCTTGGTGGGTCGTGGCACTAGC
ATTAATGGGTCTTGGAATTGCATTCATGGTTCCTTCTTTGCTTCCATCAT
ATTTGCTTCCAAAGAAACAAGTCCTAGGATCAGTTGATAGTGTTTCAAAA
GCCTCATGA
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Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:18678872..18679630+

>rna-TanjilR_28493_La_Tanjil_v1.0 ID=rna-TanjilR_28493_La_Tanjil_v1.0; Name=rna-TanjilR_28493; organism=Lupinus angustifolius; type=CDS; length=408bp; location=Sequence derived from: Chr_LG15-CM007375.1:18678872..18679630+ (Lupinus angustifolius
ATGTGGTATGAAGTGAAGATATCATATCCAGCTTCTATACCAGCTAGCTT
TTCCATAGAACTGAAGAGAGACAAGTTGAATATGGTAATCAACAAGAACA
GGAGATTACTCAACACTGAAAAGCTAATTTTCAAGAACTATAGTGACCAG
GATAAAACCTATGTGCTAGTAACTGTGAAGCCAGAAGGGTTTCTGGCAAA
ACCACATGTACCAGAGAGACAGTTCGTTATCTTTAATATAGTCTGTGATG
AACTATTATTAGGCATACCCCACAAAGCTTGGTGGGTCGTGGCACTAGCA
TTAATGGGTCTTGGAATTGCATTCATGGTTCCTTCTTTGCTTCCATCATA
TTTGCTTCCAAAGAAACAAGTCCTAGGATCAGTTGATAGTGTTTCAAAAG
CCTCATGA
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