rna-TanjilR_24200
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_24200 vs. DB:Swiss
Match: ASI1_ARATH (Protein ANTI-SILENCING 1 OS=Arabidopsis thaliana OX=3702 GN=ASI1 PE=4 SV=2) HSP 1 Score: 110.923 bits (276), Expect = 5.865e-23 Identity = 59/96 (61.46%), Postives = 69/96 (71.88%), Query Frame = 1 Query: 76 DVQFYESFRYDGVDYKRYDSVYFYKEGEP---EPFIGKIIKIWENADKS--KKVKVLWFFRPCEILNFLEGI-ETLENELFLAYGDGLGLANINPL 345
DVQFYESF YDG +Y+ YD V EP EPFIG IIKIWE+A+K KKVK+LWFF+P EI +LEG+ L NE+FLA G+GLGLAN N L
Sbjct: 26 DVQFYESFTYDGDEYRLYDCVLVGNASEPDSTEPFIGMIIKIWEHANKHIPKKVKLLWFFKPSEIAPYLEGVPNVLANEVFLASGEGLGLANTNQL 121 HSP 2 Score: 71.2478 bits (173), Expect = 1.143e-10 Identity = 37/66 (56.06%), Postives = 49/66 (74.24%), Query Frame = 3 Query: 1359 EAISGKCNVVCIAKDSRNPQVSDEEFQDAEFVFSRFFDVGKRNILDRIDDDKIADIEGT*FLWNKC 1556
EAI GKC+V+CI+KD RNPQ SDE+F A+FVF R FDVG ++D I DDKIA ++ F++N+
Sbjct: 122 EAIGGKCSVLCISKDKRNPQPSDEKFNSADFVFCRAFDVGSCKVVDTI-DDKIAGVDVK-FIFNRA 185 HSP 3 Score: 63.1586 bits (152), Expect = 4.203e-8 Identity = 36/106 (33.96%), Postives = 49/106 (46.23%), Query Frame = 2 Query: 9260 GSPLVGSIGRPCFPEKKPIFYGHHVVDQHRTHMQREMVRYLTFLYIFFAKCFNFYVS*IDGLFSLVCFILFTQKDAVSTSHCSQPNNIEYEMALEWCLLQERGDKA 9577
G PLV S + P K +F GH + H+T +REM +DAV+TSH SQPNN+E++MA+EWCL Q R ++A
Sbjct: 559 GRPLVASFAKITPPGKPSLFSGH--IKLHKTQTRREM------------------------------------RDAVATSHSSQPNNLEFDMAMEWCLHQARHEQA 626 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_24200 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 1 Position : 0 Zoom : x 1
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28 Position : 0 Zoom : x 1
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_24200_La_Tanjil_v1.0 ID=rna-TanjilR_24200_La_Tanjil_v1.0; Name=rna-TanjilR_24200; organism=Lupinus angustifolius; type=mRNA; length=9625bpback to top protein sequence of rna-TanjilR_24200_La_Tanjil_v1.0 >rna-TanjilR_24200_La_Tanjil_v1.0 ID=rna-TanjilR_24200_La_Tanjil_v1.0; Name=rna-TanjilR_24200_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=634bpback to top mRNA from alignment at Chr_LG15-CM007375.1:18930536..18940160+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_24200_La_Tanjil_v1.0 ID=rna-TanjilR_24200_La_Tanjil_v1.0; Name=rna-TanjilR_24200; organism=Lupinus angustifolius; type=mRNA; length=9625bp; location=Sequence derived from: Chr_LG15-CM007375.1:18930536..18940160+ (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:18930536..18940160+ >rna-TanjilR_24200_La_Tanjil_v1.0 ID=rna-TanjilR_24200_La_Tanjil_v1.0; Name=rna-TanjilR_24200; organism=Lupinus angustifolius; type=CDS; length=1905bp; location=Sequence derived from: Chr_LG15-CM007375.1:18930536..18940160+ (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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