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Transcript Overview
Name | rna-TanjilR_07906 |
Unique Name | rna-TanjilR_07906_La_Tanjil_v1.0 |
Type | mRNA |
Organism | Lupinus angustifolius (blue lupin) |
Sequence length | 2340 |
Product | hypothetical protein |
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_07906 | rna-TanjilR_07906_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
rna-TanjilR_07906_La_Tanjil_v1.0 | rna-TanjilR_07906_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_07906_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19216338..19216667 | rna-TanjilR_07906_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19216338..19216667 | Lupinus angustifolius | CDS |
rna-TanjilR_07906_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19215043..19215301 | rna-TanjilR_07906_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19215043..19215301 | Lupinus angustifolius | CDS |
rna-TanjilR_07906_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19214328..19214710 | rna-TanjilR_07906_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19214328..19214710 | Lupinus angustifolius | CDS |
The following exon feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type |
rna-TanjilR_07906_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19216338..19216667 | rna-TanjilR_07906_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19216338..19216667 | Lupinus angustifolius | exon |
rna-TanjilR_07906_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19215043..19215301 | rna-TanjilR_07906_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19215043..19215301 | Lupinus angustifolius | exon |
rna-TanjilR_07906_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19214328..19214710 | rna-TanjilR_07906_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:19214328..19214710 | Lupinus angustifolius | exon |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
None | No IPR available | COILS | Coil | Coil | coord: 221..241 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 94..169 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 113..132 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 133..169 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 203..222 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 27..49 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 50..69 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 183..323 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 241..262 |
None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 26..79 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_07906_La_Tanjil_v1.0 ID=rna-TanjilR_07906_La_Tanjil_v1.0; Name=rna-TanjilR_07906; organism=Lupinus angustifolius; type=mRNA; length=2340bp ATGGTAGGGGGTGGTAGCAGAAGGAATGAAGGTTCATCTATAATCAACAA CACCAACATCTTTGCTGCACTTGATACTCTCAAGAAAAAGAACAAGAACA AGAACAAGAACAATTCTGATAAGAAATCTCATCCTCAATCCTCCAAAGGC TCTGAATCAGAATCAGATCCTCAAGTGTTTTGGACACCCTCTCCTTTGAA TTCTAAATCATGGGCTGATATTGATGATGATGATGATTATTACGCCACCA CTGCTCCTCTCAAATCTCTTTGGACCATTCCTCAACAACTACCCCACCTT AATAATCATCACAAACCCTCTATTGTAGAGGTTTGATTTTCTATTCAATT CATGTTTATTTATATGTTGAATTTGCTTTTAAATACTTTTGTTGCTTAAT GTAATATTGCCTTACATTGCATTTTTTAATGATTTGGAGATATTACAGGA ATGTTTGTGAAATGGTAGTGTTGTGAATCAGGAATGTCTGAAATAAAGTT TGAATCTTTTTTGTAAATTGGTTCTGATGAATCAAATTTACTTATGAATG GAGTATTTTGTACTTTAAAGTTTAAAAATTGGTAGTTGGGTTTTGGGACA GCTTGTGTCCCATAGAGAATCTATTGAACAACAATTATGGACAAGACGAT GACGACTTTCGTATAAGTTTGATCGTTATAACGCAAAATACAAGACTGCA TTTATGAAATGTAAAGCTGTCTAGATTTTTTCATTATGCACATAACATGG GGACTTGATTATCCCTTTTATAGGATACCTGGGCCTATAGTTGTTGTGGG TGCTGAATCAGGAATGTTTGAAATGAAGTTTGAACCTTTTTTAATTGGTT TGTATCTCTACCCATCGATGGAATATTTTCCTGCAAAGAATCTATTGAAC AAGAATTCTCCACAATATGACAACTTCCATACAAGTTTGAGTTTTGTAAT GCAAGCGTTATCAAATGTGCAGATGTTTGGAAAGTTGTCCAAATTTTTTG TTTACATGTGCGGGTGCTAGTTTATTTTAATGTACATATTATGCACACCG GTACTTGATTATCCCTTTTGGTTATGCATATTCTTAGGAAACCTGGAGCT TCTCTGAAATATAAATCAGGTTACCTTCAGGAAACCTGGAGCTTTATGAT GCTTGTGTTTCCTGAAGGTAATCTGATTTATATTTCAGAGACAATAGTTG GTTTTGTTCTATTTGCCATTTGGTTTATTCTAGCTTCCAATACTGGCATA TTAGAGATCTTTCGGATCATCATAGGACAATAAACTTTGAAATGTAATCA CAATTTTTTTTCTGATGAGTTAAATGTCAGCTGTAGAAGTGTATAATGAT TTATCTATGTTTACAGGATAGCGAGAGTGAGGAGGATATTTTATTAGATG ACGGGGATGATGATGCGGAGGAAGAGCATGATCACGAGCCGGAGTACTCT GTGAAACCTGAACCTGAGGTTAAGAAACATACTGAAGTTCCTGTGGCACC AAAGGAAGCAGAACATCAACTCTCCAAAAAGGAAAGGAAAAAGAAGGAAC TTGCAGAGCTTGACGCTCTTCTAGCTGATTTTGGAGTTACACAAAAAGAA AGTAATGGTAAAGATGTGTCACAAGGTAACTAAGCAGAACTTTATGCCAC ATTACTTTGAAGGTTATATTTTATTCTGTGTTTTGTGAGGTTAGGTTATT GAGTGGCCATGGCATGCTTTTCTTCTTCAATCTTCGTCAGCTATTCTTGA ATTGATAAATTCCCACTTTCGCTCGAAGATTTACCCCATGTTCTTTGTGC TGCACTAATACACTTTTCTATTCGGGTACAAATTGTTTTGTTCATTTACT TTTCTGGAATTTCAGTGGTAAATTTTTTGTGCATGTCAAGATGCAATGAC TCAAGGTAGCTTACTATCGAATCTTTCGCACGAGATAAAAGGAAGTTGTA TTTGCAGGTGCATCTCAGGATAAGAAAGCTGTTGAGGTAGATGGAGAAAA GAAAGATAATATCACTGCAGAATCAAAGAATGCCAAGAAGAAGAAAAAAA AGGATAAAGCATCCAAGGAGGTCAAAGAATCTCAGGATCACCCCAACAAT ATAAATACGAATAATGAGCCTGATGACGCCACAGGTGCCGAAAATGTGGA GGAGGGTACGTCTACTGTTGATGTGAAAGAGCGTCTTAAGAAGATTGCTT CTGTAAAAAAGAAGAAATCTAGTAAGGAAATGGATGTGGCTGCAAAAGCT GCTTCACAAGAGGCTGCTGCAAGGAGAGCAAGGCTTGCTGCTGTGAAGAA AAAGGAAAAAAACCATTATAACCAGCAACCTGTGCGGTAA back to topprotein sequence of rna-TanjilR_07906_La_Tanjil_v1.0 >rna-TanjilR_07906_La_Tanjil_v1.0 ID=rna-TanjilR_07906_La_Tanjil_v1.0; Name=rna-TanjilR_07906_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=323bp MVGGGSRRNEGSSIINNTNIFAALDTLKKKNKNKNKNNSDKKSHPQSSKG SESESDPQVFWTPSPLNSKSWADIDDDDDYYATTAPLKSLWTIPQQLPHL NNHHKPSIVEDSESEEDILLDDGDDDAEEEHDHEPEYSVKPEPEVKKHTE VPVAPKEAEHQLSKKERKKKELAELDALLADFGVTQKESNGKDVSQGASQ DKKAVEVDGEKKDNITAESKNAKKKKKKDKASKEVKESQDHPNNINTNNE PDDATGAENVEEGTSTVDVKERLKKIASVKKKKSSKEMDVAAKAASQEAA ARRARLAAVKKKEKNHYNQQPVR back to topmRNA from alignment at Chr_LG15-CM007375.1:19214328..19216667- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_07906_La_Tanjil_v1.0 ID=rna-TanjilR_07906_La_Tanjil_v1.0; Name=rna-TanjilR_07906; organism=Lupinus angustifolius; type=mRNA; length=2340bp; location=Sequence derived from: Chr_LG15-CM007375.1:19214328..19216667- (Lupinus angustifolius ATGGTAGGGGGTGGTAGCAGAAGGAATGAAGGTTCATCTATAATCAACAA
CACCAACATCTTTGCTGCACTTGATACTCTCAAGAAAAAGAACAAGAACA
AGAACAAGAACAATTCTGATAAGAAATCTCATCCTCAATCCTCCAAAGGC
TCTGAATCAGAATCAGATCCTCAAGTGTTTTGGACACCCTCTCCTTTGAA
TTCTAAATCATGGGCTGATATTGATGATGATGATGATTATTACGCCACCA
CTGCTCCTCTCAAATCTCTTTGGACCATTCCTCAACAACTACCCCACCTT
AATAATCATCACAAACCCTCTATTGTAGAGGTTTGATTTTCTATTCAATT
CATGTTTATTTATATGTTGAATTTGCTTTTAAATACTTTTGTTGCTTAAT
GTAATATTGCCTTACATTGCATTTTTTAATGATTTGGAGATATTACAGGA
ATGTTTGTGAAATGGTAGTGTTGTGAATCAGGAATGTCTGAAATAAAGTT
TGAATCTTTTTTGTAAATTGGTTCTGATGAATCAAATTTACTTATGAATG
GAGTATTTTGTACTTTAAAGTTTAAAAATTGGTAGTTGGGTTTTGGGACA
GCTTGTGTCCCATAGAGAATCTATTGAACAACAATTATGGACAAGACGAT
GACGACTTTCGTATAAGTTTGATCGTTATAACGCAAAATACAAGACTGCA
TTTATGAAATGTAAAGCTGTCTAGATTTTTTCATTATGCACATAACATGG
GGACTTGATTATCCCTTTTATAGGATACCTGGGCCTATAGTTGTTGTGGG
TGCTGAATCAGGAATGTTTGAAATGAAGTTTGAACCTTTTTTAATTGGTT
TGTATCTCTACCCATCGATGGAATATTTTCCTGCAAAGAATCTATTGAAC
AAGAATTCTCCACAATATGACAACTTCCATACAAGTTTGAGTTTTGTAAT
GCAAGCGTTATCAAATGTGCAGATGTTTGGAAAGTTGTCCAAATTTTTTG
TTTACATGTGCGGGTGCTAGTTTATTTTAATGTACATATTATGCACACCG
GTACTTGATTATCCCTTTTGGTTATGCATATTCTTAGGAAACCTGGAGCT
TCTCTGAAATATAAATCAGGTTACCTTCAGGAAACCTGGAGCTTTATGAT
GCTTGTGTTTCCTGAAGGTAATCTGATTTATATTTCAGAGACAATAGTTG
GTTTTGTTCTATTTGCCATTTGGTTTATTCTAGCTTCCAATACTGGCATA
TTAGAGATCTTTCGGATCATCATAGGACAATAAACTTTGAAATGTAATCA
CAATTTTTTTTCTGATGAGTTAAATGTCAGCTGTAGAAGTGTATAATGAT
TTATCTATGTTTACAGGATAGCGAGAGTGAGGAGGATATTTTATTAGATG
ACGGGGATGATGATGCGGAGGAAGAGCATGATCACGAGCCGGAGTACTCT
GTGAAACCTGAACCTGAGGTTAAGAAACATACTGAAGTTCCTGTGGCACC
AAAGGAAGCAGAACATCAACTCTCCAAAAAGGAAAGGAAAAAGAAGGAAC
TTGCAGAGCTTGACGCTCTTCTAGCTGATTTTGGAGTTACACAAAAAGAA
AGTAATGGTAAAGATGTGTCACAAGGTAACTAAGCAGAACTTTATGCCAC
ATTACTTTGAAGGTTATATTTTATTCTGTGTTTTGTGAGGTTAGGTTATT
GAGTGGCCATGGCATGCTTTTCTTCTTCAATCTTCGTCAGCTATTCTTGA
ATTGATAAATTCCCACTTTCGCTCGAAGATTTACCCCATGTTCTTTGTGC
TGCACTAATACACTTTTCTATTCGGGTACAAATTGTTTTGTTCATTTACT
TTTCTGGAATTTCAGTGGTAAATTTTTTGTGCATGTCAAGATGCAATGAC
TCAAGGTAGCTTACTATCGAATCTTTCGCACGAGATAAAAGGAAGTTGTA
TTTGCAGGTGCATCTCAGGATAAGAAAGCTGTTGAGGTAGATGGAGAAAA
GAAAGATAATATCACTGCAGAATCAAAGAATGCCAAGAAGAAGAAAAAAA
AGGATAAAGCATCCAAGGAGGTCAAAGAATCTCAGGATCACCCCAACAAT
ATAAATACGAATAATGAGCCTGATGACGCCACAGGTGCCGAAAATGTGGA
GGAGGGTACGTCTACTGTTGATGTGAAAGAGCGTCTTAAGAAGATTGCTT
CTGTAAAAAAGAAGAAATCTAGTAAGGAAATGGATGTGGCTGCAAAAGCT
GCTTCACAAGAGGCTGCTGCAAGGAGAGCAAGGCTTGCTGCTGTGAAGAA
AAAGGAAAAAAACCATTATAACCAGCAACCTGTGCGGTAA back to topCoding sequence (CDS) from alignment at Chr_LG15-CM007375.1:19214328..19216667- >rna-TanjilR_07906_La_Tanjil_v1.0 ID=rna-TanjilR_07906_La_Tanjil_v1.0; Name=rna-TanjilR_07906; organism=Lupinus angustifolius; type=CDS; length=972bp; location=Sequence derived from: Chr_LG15-CM007375.1:19214328..19216667- (Lupinus angustifolius ATGGTAGGGGGTGGTAGCAGAAGGAATGAAGGTTCATCTATAATCAACAA CACCAACATCTTTGCTGCACTTGATACTCTCAAGAAAAAGAACAAGAACA AGAACAAGAACAATTCTGATAAGAAATCTCATCCTCAATCCTCCAAAGGC TCTGAATCAGAATCAGATCCTCAAGTGTTTTGGACACCCTCTCCTTTGAA TTCTAAATCATGGGCTGATATTGATGATGATGATGATTATTACGCCACCA CTGCTCCTCTCAAATCTCTTTGGACCATTCCTCAACAACTACCCCACCTT AATAATCATCACAAACCCTCTATTGTAGAGGATAGCGAGAGTGAGGAGGA TATTTTATTAGATGACGGGGATGATGATGCGGAGGAAGAGCATGATCACG AGCCGGAGTACTCTGTGAAACCTGAACCTGAGGTTAAGAAACATACTGAA GTTCCTGTGGCACCAAAGGAAGCAGAACATCAACTCTCCAAAAAGGAAAG GAAAAAGAAGGAACTTGCAGAGCTTGACGCTCTTCTAGCTGATTTTGGAG TTACACAAAAAGAAAGTAATGGTAAAGATGTGTCACAAGGTGCATCTCAG GATAAGAAAGCTGTTGAGGTAGATGGAGAAAAGAAAGATAATATCACTGC AGAATCAAAGAATGCCAAGAAGAAGAAAAAAAAGGATAAAGCATCCAAGG AGGTCAAAGAATCTCAGGATCACCCCAACAATATAAATACGAATAATGAG CCTGATGACGCCACAGGTGCCGAAAATGTGGAGGAGGGTACGTCTACTGT TGATGTGAAAGAGCGTCTTAAGAAGATTGCTTCTGTAAAAAAGAAGAAAT CTAGTAAGGAAATGGATGTGGCTGCAAAAGCTGCTTCACAAGAGGCTGCT GCAAGGAGAGCAAGGCTTGCTGCTGTGAAGAAAAAGGAAAAAAACCATTA TAACCAGCAACCTGTGCGGTAA back to top
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