rna-TanjilR_09800

Transcript Overview


Name	rna-TanjilR_09800
Unique Name	rna-TanjilR_09800_La_Tanjil_v1.0
Type	mRNA
Organism	Lupinus angustifolius (blue lupin)
Sequence length	2741
Product	hypothetical protein

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Chr_LG15-CM007375.1	supercontig	Chr_LG15-CM007375.1:20165639..20168379 +	Lupinus angustifolius L. Tanjil genome v1.0	n/a

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Lupinus angustifolius L. Tanjil genome v1.0	2019-09-17
InterProScan: L. angustifolius cv. Tanjil genome v1.0	2020-01-28
BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot	2020-01-28

Orthologs

Syntenic blocks


Syntentic block	Assembly	Species
ananL262	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananL266	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR293	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR294	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR302	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ananR304	Lupinus angustifolius L. Tanjil genome v1.0	Lupinus angustifolius
ancaiR0428	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0442	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0449	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaiR0460	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
ancaR0375	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0382	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0383	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0387	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
ancaR0395	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
anccR0476	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0482	Cajanus cajan Asha genome v1.0	Cajanus cajan
anccR0504	Cajanus cajan Asha genome v1.0	Cajanus cajan
ancrR0421	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0429	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
ancrR0443	Cicer reticulatum L. PI489777 genome v1	Cicer reticulatum
anpsR0332	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0344	Pisum sativum Cameor genome v1a	Pisum sativum
anpsR0348	Pisum sativum Cameor genome v1a	Pisum sativum
anpvR0403	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0407	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0445	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anpvR0453	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
anvuR0362	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0368	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0370	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0372	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anvuR0383	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
anasR0416	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0422	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0438	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0448	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anasR0457	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
anzwsR0372	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0377	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0387	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0393	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
anzwsR0397	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
antifR0373	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0385	Vicia faba cv. Tiffany genome v1.0	Vicia faba
antifR0389	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0373	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
antifR0396	Vicia faba cv. Tiffany genome v1.0	Vicia faba
anvfhR0385	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0390	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvfhR0397	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
anvrvR0358	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0360	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0369	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0381	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvrvR0389	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
anvuaR0336	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR0347	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvuaR0353	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
anvssR0416	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0426	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0428	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0433	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
anvssR0439	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
ancanR0334	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0341	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0342	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0346	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
ancanR0356	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
anavjR0396	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0398	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0409	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0421	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
anavjR0431	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
ancarR0371		Cicer arietinum
ancarR0373		Cicer arietinum
ancarR0380		Cicer arietinum
ancarR0389		Cicer arietinum
anccaR0336	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0344	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0360	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anccaR0364	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan
anvumR0406	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0416	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0428	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvumR0435	Vigna umbellata FF25 genome v1.0	Vigna umbellata
anvvaR0394	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0398	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0410	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0420	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvvaR0426	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
anvasR0411	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0415	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0425	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvasR0435	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0426	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvasR0445	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
anvstR0435	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anvstR0443	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
anpvfR0416	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anpvfR0423	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0342	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR0349	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR0351	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0457	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
anvunR0353	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anvunR0365	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
anpvfR0469	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris

Orthologs


Gene/Transcript	Assembly	Species
Phvul.009G069600.1	Phaseolus vulgaris G19833 genome v2.1	Phaseolus vulgaris
XM_058866232.1	Vicia villosa cv. AU Merit genome v1.0	Vicia villosa
Vigun09g233600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.1	Vigna unguiculata
rna-XM_027334171.1	Cicer arietinum CDC Frontier NCBI RefSeq v1	Cicer arietinum
Va04G067250.2	Vigna angularis cv. Jingnong6 genome v1.7.1	Vigna angularis
Vigst.02G041200.01	Vigna stipulacea acc. JP252948 genome v2.a1	Vigna stipulacea
Vigan.02G050500.01	Vigna angularis cv. Shumari genome v1.a1	Vigna angularis
Vfaba.Tiffany.R1.3g181160.1	Vicia faba cv. Tiffany genome v1.0	Vicia faba
rna-XM_014644986.2	Vigna radiata cv. VC1973A genome v6.0	Vigna radiata
Psat6g014360.1	Pisum sativum Cameor genome v1a	Pisum sativum
Vum_02G00423.1	Vigna umbellata FF25 genome v1.0	Vigna umbellata
evm.model.Chr09.1412	Vigna unguiculata subsp. sesquipedalis line A147 genome v1.0	Vigna unguiculata subsp. sesquipedalis
rna-KK1_009686	Cajanus cajan Asha genome v1.0	Cajanus cajan
Psat06G0038100-T1	Pisum sativum cv. Zhongwan6 genome v1.0	Pisum sativum
Ca_09320.1	Cicer arietinum ICC 4958 genome v2	Cicer arietinum
Vfaba.Hedin2.R1.3g221600.1	Vicia faba inbred line Hedin/2 genome v1.0	Vicia faba
Ca_18357	Cicer arietinum CDC Frontier genome v1.0	Cicer arietinum
Vigun09g233600.1	Vigna unguiculata L. Walp IT97K-499-35 genome v1.2	Vigna unguiculata
LR48_mrnaVigan04g244400	Vigna angularis Jingnong 6 genome v1.1	Vigna angularis
jg35373.t1	Vicia sativa cv. Studenica genome v1.0	Vicia sativa
PvulFLAVERTChr09.523	Phaseolus vulgaris cv. Flavert genome v1.0	Phaseolus vulgaris
Cc_v2.0_07230.1	Cajanus cajan cv. Asha genome v2.0	Cajanus cajan

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
gene-TanjilG_09800	gene-TanjilG_09800_La_Tanjil_v1.0	Lupinus angustifolius	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_09800	rna-TanjilR_09800_La_Tanjil_v1.0-protein	Lupinus angustifolius	polypeptide
rna-TanjilR_09800_La_Tanjil_v1.0	rna-TanjilR_09800_La_Tanjil_v1.0	Lupinus angustifolius	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762	rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762	Lupinus angustifolius	exon
rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080	rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080	Lupinus angustifolius	exon
rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425	rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425	Lupinus angustifolius	exon
rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579	rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579	Lupinus angustifolius	exon
rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674	rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674	Lupinus angustifolius	exon
rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967	rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967	Lupinus angustifolius	exon
rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379	rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379	Lupinus angustifolius	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762	rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762	Lupinus angustifolius	CDS
rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080	rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080	Lupinus angustifolius	CDS
rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425	rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425	Lupinus angustifolius	CDS
rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579	rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579	Lupinus angustifolius	CDS
rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674	rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674	Lupinus angustifolius	CDS
rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967	rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967	Lupinus angustifolius	CDS
rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379	rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379	Lupinus angustifolius	CDS

Homology

The following BLAST results are available for this feature:

BLAST of rna-TanjilR_09800 vs.

BLAST of rna-TanjilR_09800 vs.
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot)
Total hits: 0

Position :

Zoom :

x 1


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032008	Domain of unknown function DUF4792	PFAM	PF16040	DUF4792	coord: 87..155 e-value: 2.6E-15 score: 56.1
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10		coord: 290..345 e-value: 2.8E-11 score: 44.7
None	No IPR available	PFAM	PF13920	zf-C3HC4_3	coord: 316..345 e-value: 2.9E-10 score: 39.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 285..309

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at Chr_LG15-CM007375.1:20165639..20168379+
coding sequence from alignment at Chr_LG15-CM007375.1:20165639..20168379+

mRNA sequence

>rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800; organism=Lupinus angustifolius; type=mRNA; length=2741bp
ATGATACGAGCCATGCACACGACACAGTGGCGGCTACCCCATACCCCACC
ATCATCTCAGCCATGCCACCAGTTTTGGCCCAACATGCTGTCTTCTCTCA
CCGTTTGGATTTTTGGCACGTTATGTAAATTTTCATCTTTTGTTATTGTA
ACCCCTCCTtctattcatttctttttctaaaCCATTGCTCCTATTATTTC
TTTGTTGTTTTGCAGTTTCAGCTACTCTCAGATATGGGCATTATGGAGAT
TCTCATCTTCTGCTTGGGCCTACCTCATCGCGTTTGATCAAGACAAGTTC
TATTTTTGTTAAGCAAATTCAAGtatcaaacaagtttaataaTCAAGTTA
CACTTCATGCTTTCAATCAGAAGCCTCACTTAAGCTCCCAAACAAATTGG
ACTTCCTCAAATTTCTACCTTGTTGCACCACATAGTTGCAAGGTAACTTT
ATCTATCATAGGCATAAATTTAATCTGTTTAGGCTATCTCATAAATATCC
AAGTTTTAGAGCATGATACCAAATTAAATTATAGACAAAATAATTAGAAA
AGATAtagagattaatattttttcaatgaacatgatttatgttaaaatat
attgtttgattAGTTAACCAATCTTAGATTAAGGTTTTGTTACTGTATCA
CATTTATAAAGctgttcataaaaaatttctcGTGCAGGGAATTTCTGTGT
GGTTAAATAAAGGCTCCACCATCCGTATGATGTGGAAATCACGTTCTAGG
AAGAGTTTGAAACAGGTTCATGGGATTGTGGTCAAAggttttctcttctt
cttgttcttttcCCGAGTAAAGTTTTTAGGGTTGTTTCATGAAAGATATG
TTATTGTTCATAGGAGAAAGGAACTTCGAAAAACTGCAGCCTAAACAAAC
AAGATTCACCtatccaattttagttcatgaGACTGCTCGAGGTAATTGAT
GGCAAAAAATTACTCCCATGGGGAAAGTGCATTGACAATagttttgaaac
tttgaatgcttgtcatgttatatatatgtctAGCTATAAATGACATTGTT
TCGTGAACATCAAAATAGTGACACATGCATTGTCCTTTAGCTTTTTTCTA
TGTATTCGTGTATGTTGGACCAAAACCAAAAGCACAAGTGAGATACTACG
TCTTGAacaaaaaccttaagacattagtttcatgagcATTTCCTACTTGT
AAATTCTTTCACTTATTCCTGCATATttaatgtgggacttcacaattgaa
taaacccaatagtgtacacttgaataaacccaacaacaatgtgtatgaag
aaaaaataaatgtaatagaCTTAGTTAACATAActgtataaaatattaat
tacactAAAATAGTCTTTTActagtgtatgatttttatggAATATATCCA
ATTATCTCAGAGATTCTTTTGTTATCTAAAAATGAGTTTTATaaaggaaa
ttgaatattttggaaaaatcttctctctcttttttctttcctcACTTATG
TTCCACTTGtccatcttcatttttttttcatgtttattaTTCTTAGCTCT
ATAATGTtctaaattcaaattaaaaatcaaaattttatcaATTAGAAAGG
GGACTTTGGtgataatatactatatttttgtttctacaaaaaaaaaatac
tatatttctgtaaaatcaaaccaaattatATGTTGAAAGGTAAAATtgac
aaatattaaaaagaattaaagtTACACATTTTTCATTGGAAATGAAACCT
AAAAACAATGTCAAGGATATAAATAGTATTTTAACCAATTAATTATTctc
tcttttaaaaaatttggtTTCCAATTCTATTCATCAACGTACACCAGATC
GATACATATGAGGAACATATCTGAACTTTTTGAAAGGGACAAGGTATTTG
TTTGATGTTGTGGACATTATTGCTAGGTAAAGAAGCTGAATACATGGTTG
AGGAAGATAATACATACAATATTGGGGTTCTAAACATGAATGCCAGGAAC
ATAATATTAACTATGAATGTTAATATTTCGGCAAAGGTATATGATATCAC
CAAAGCCAATAACATATGCTTTAGTGCAAATGGATCGTGCAGACTCAATT
TTATCTTCCCAAAAACGTATTACGTTATTCTTACAGCACCCAACAGCGTA
AGGCATTGCTAACCTTAGTTgacaaatatttcattatagACTTGTTTCTA
TTGATCTTCATTGAAGAAATGATCAACATTAATTGTTCTTGCAAATTGTA
TAATTGCAGCTAGATGGTGATGAATGGAATGTTGAAGTTTATTTTGTGTC
TCGTGCCCTAAGCTACTCATTACTTTTAGGTACACTGATcataatttatt
gttttagtttagttatgttttatactaaataataaatatgcttcattttt
ttcaatttctagGATGTACCATGATTGTTATTTATCTGATAATGAAAGTC
CTTAGAGTCTGTGATGGTAATGAAGGAGATACAAATGAGATAATAGCCAT
CACAAATAGAACACGTAATAGTGTTGCAACAACTCAAACTGAAATTGAGC
CATTTGGGGTGTCAAATCGATCATCATATGGaacaaatgaagaagatgat
gaagaatctGAAGTGTCAAATAGCTCTTCAGATGAGTTATATGATGGAAA
GTTATGTGTCATTTGTTATGATGAACAACGCAACAGTTTCTTTGTTCCTT
GTGGACATTTTGCAACTTGCTATGATTGTTCACAGAGGTAA

protein sequence of rna-TanjilR_09800_La_Tanjil_v1.0

>rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=345bp
MIRAMHTTQWRLPHTPPSSQPCHQFWPNMLSSLTVWIFGTLFSATLRYGH
YGDSHLLLGPTSSRLIKTSSIFVKQIQVSNKFNNQVTLHAFNQKPHLSSQ
TNWTSSNFYLVAPHSCKGISVWLNKGSTIRMMWKSRSRKSLKQVHGIVVK
GERNFEKLQPKQTRFTYPILVHETARGKEAEYMVEEDNTYNIGVLNMNAR
NIILTMNVNISAKLDGDEWNVEVYFVSRALSYSLLLGCTMIVIYLIMKVL
RVCDGNEGDTNEIIAITNRTRNSVATTQTEIEPFGVSNRSSYGTNEEDDE
ESEVSNSSSDELYDGKLCVICYDEQRNSFFVPCGHFATCYDCSQR

mRNA from alignment at Chr_LG15-CM007375.1:20165639..20168379+

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800; organism=Lupinus angustifolius; type=mRNA; length=2741bp; location=Sequence derived from: Chr_LG15-CM007375.1:20165639..20168379+ (Lupinus angustifolius
ATGATACGAGCCATGCACACGACACAGTGGCGGCTACCCCATACCCCACC
ATCATCTCAGCCATGCCACCAGTTTTGGCCCAACATGCTGTCTTCTCTCA
CCGTTTGGATTTTTGGCACGTTATGTAAATTTTCATCTTTTGTTATTGTA
ACCCCTCCTtctattcatttctttttctaaaCCATTGCTCCTATTATTTC
TTTGTTGTTTTGCAGTTTCAGCTACTCTCAGATATGGGCATTATGGAGAT
TCTCATCTTCTGCTTGGGCCTACCTCATCGCGTTTGATCAAGACAAGTTC
TATTTTTGTTAAGCAAATTCAAGtatcaaacaagtttaataaTCAAGTTA
CACTTCATGCTTTCAATCAGAAGCCTCACTTAAGCTCCCAAACAAATTGG
ACTTCCTCAAATTTCTACCTTGTTGCACCACATAGTTGCAAGGTAACTTT
ATCTATCATAGGCATAAATTTAATCTGTTTAGGCTATCTCATAAATATCC
AAGTTTTAGAGCATGATACCAAATTAAATTATAGACAAAATAATTAGAAA
AGATAtagagattaatattttttcaatgaacatgatttatgttaaaatat
attgtttgattAGTTAACCAATCTTAGATTAAGGTTTTGTTACTGTATCA
CATTTATAAAGctgttcataaaaaatttctcGTGCAGGGAATTTCTGTGT
GGTTAAATAAAGGCTCCACCATCCGTATGATGTGGAAATCACGTTCTAGG
AAGAGTTTGAAACAGGTTCATGGGATTGTGGTCAAAggttttctcttctt
cttgttcttttcCCGAGTAAAGTTTTTAGGGTTGTTTCATGAAAGATATG
TTATTGTTCATAGGAGAAAGGAACTTCGAAAAACTGCAGCCTAAACAAAC
AAGATTCACCtatccaattttagttcatgaGACTGCTCGAGGTAATTGAT
GGCAAAAAATTACTCCCATGGGGAAAGTGCATTGACAATagttttgaaac
tttgaatgcttgtcatgttatatatatgtctAGCTATAAATGACATTGTT
TCGTGAACATCAAAATAGTGACACATGCATTGTCCTTTAGCTTTTTTCTA
TGTATTCGTGTATGTTGGACCAAAACCAAAAGCACAAGTGAGATACTACG
TCTTGAacaaaaaccttaagacattagtttcatgagcATTTCCTACTTGT
AAATTCTTTCACTTATTCCTGCATATttaatgtgggacttcacaattgaa
taaacccaatagtgtacacttgaataaacccaacaacaatgtgtatgaag
aaaaaataaatgtaatagaCTTAGTTAACATAActgtataaaatattaat
tacactAAAATAGTCTTTTActagtgtatgatttttatggAATATATCCA
ATTATCTCAGAGATTCTTTTGTTATCTAAAAATGAGTTTTATaaaggaaa
ttgaatattttggaaaaatcttctctctcttttttctttcctcACTTATG
TTCCACTTGtccatcttcatttttttttcatgtttattaTTCTTAGCTCT
ATAATGTtctaaattcaaattaaaaatcaaaattttatcaATTAGAAAGG
GGACTTTGGtgataatatactatatttttgtttctacaaaaaaaaaatac
tatatttctgtaaaatcaaaccaaattatATGTTGAAAGGTAAAATtgac
aaatattaaaaagaattaaagtTACACATTTTTCATTGGAAATGAAACCT
AAAAACAATGTCAAGGATATAAATAGTATTTTAACCAATTAATTATTctc
tcttttaaaaaatttggtTTCCAATTCTATTCATCAACGTACACCAGATC
GATACATATGAGGAACATATCTGAACTTTTTGAAAGGGACAAGGTATTTG
TTTGATGTTGTGGACATTATTGCTAGGTAAAGAAGCTGAATACATGGTTG
AGGAAGATAATACATACAATATTGGGGTTCTAAACATGAATGCCAGGAAC
ATAATATTAACTATGAATGTTAATATTTCGGCAAAGGTATATGATATCAC
CAAAGCCAATAACATATGCTTTAGTGCAAATGGATCGTGCAGACTCAATT
TTATCTTCCCAAAAACGTATTACGTTATTCTTACAGCACCCAACAGCGTA
AGGCATTGCTAACCTTAGTTgacaaatatttcattatagACTTGTTTCTA
TTGATCTTCATTGAAGAAATGATCAACATTAATTGTTCTTGCAAATTGTA
TAATTGCAGCTAGATGGTGATGAATGGAATGTTGAAGTTTATTTTGTGTC
TCGTGCCCTAAGCTACTCATTACTTTTAGGTACACTGATcataatttatt
gttttagtttagttatgttttatactaaataataaatatgcttcattttt
ttcaatttctagGATGTACCATGATTGTTATTTATCTGATAATGAAAGTC
CTTAGAGTCTGTGATGGTAATGAAGGAGATACAAATGAGATAATAGCCAT
CACAAATAGAACACGTAATAGTGTTGCAACAACTCAAACTGAAATTGAGC
CATTTGGGGTGTCAAATCGATCATCATATGGaacaaatgaagaagatgat
gaagaatctGAAGTGTCAAATAGCTCTTCAGATGAGTTATATGATGGAAA
GTTATGTGTCATTTGTTATGATGAACAACGCAACAGTTTCTTTGTTCCTT
GTGGACATTTTGCAACTTGCTATGATTGTTCACAGAGGTAA

Coding sequence (CDS) from alignment at Chr_LG15-CM007375.1:20165639..20168379+

>rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800; organism=Lupinus angustifolius; type=CDS; length=1038bp; location=Sequence derived from: Chr_LG15-CM007375.1:20165639..20168379+ (Lupinus angustifolius
ATGATACGAGCCATGCACACGACACAGTGGCGGCTACCCCATACCCCACC
ATCATCTCAGCCATGCCACCAGTTTTGGCCCAACATGCTGTCTTCTCTCA
CCGTTTGGATTTTTGGCACGTTATTTTCAGCTACTCTCAGATATGGGCAT
TATGGAGATTCTCATCTTCTGCTTGGGCCTACCTCATCGCGTTTGATCAA
GACAAGTTCTATTTTTGTTAAGCAAATTCAAGtatcaaacaagtttaata
aTCAAGTTACACTTCATGCTTTCAATCAGAAGCCTCACTTAAGCTCCCAA
ACAAATTGGACTTCCTCAAATTTCTACCTTGTTGCACCACATAGTTGCAA
GGGAATTTCTGTGTGGTTAAATAAAGGCTCCACCATCCGTATGATGTGGA
AATCACGTTCTAGGAAGAGTTTGAAACAGGTTCATGGGATTGTGGTCAAA
gGAGAAAGGAACTTCGAAAAACTGCAGCCTAAACAAACAAGATTCACCta
tccaattttagttcatgaGACTGCTCGAGGTAAAGAAGCTGAATACATGG
TTGAGGAAGATAATACATACAATATTGGGGTTCTAAACATGAATGCCAGG
AACATAATATTAACTATGAATGTTAATATTTCGGCAAAGCTAGATGGTGA
TGAATGGAATGTTGAAGTTTATTTTGTGTCTCGTGCCCTAAGCTACTCAT
TACTTTTAGGATGTACCATGATTGTTATTTATCTGATAATGAAAGTCCTT
AGAGTCTGTGATGGTAATGAAGGAGATACAAATGAGATAATAGCCATCAC
AAATAGAACACGTAATAGTGTTGCAACAACTCAAACTGAAATTGAGCCAT
TTGGGGTGTCAAATCGATCATCATATGGaacaaatgaagaagatgatgaa
gaatctGAAGTGTCAAATAGCTCTTCAGATGAGTTATATGATGGAAAGTT
ATGTGTCATTTGTTATGATGAACAACGCAACAGTTTCTTTGTTCCTTGTG
GACATTTTGCAACTTGCTATGATTGTTCACAGAGGTAA

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR032008	APD1-4_N
IPR013083	Znf_RING/FYVE/PHD

Search form

rna-TanjilR_09800