Transcript Overview
| Name | rna-TanjilR_09800 |
|---|
| Unique Name | rna-TanjilR_09800_La_Tanjil_v1.0 |
|---|
| Type | mRNA |
|---|
| Organism | Lupinus angustifolius (blue lupin) |
|---|
| Sequence length | 2741 |
|---|
| Product | hypothetical protein |
|---|
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks
Orthologs
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_09800 | rna-TanjilR_09800_La_Tanjil_v1.0-protein | Lupinus angustifolius | polypeptide |
| rna-TanjilR_09800_La_Tanjil_v1.0 | rna-TanjilR_09800_La_Tanjil_v1.0 | Lupinus angustifolius | polypeptide |
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762 | rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762 | Lupinus angustifolius | exon |
| rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080 | rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080 | Lupinus angustifolius | exon |
| rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425 | rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425 | Lupinus angustifolius | exon |
| rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579 | rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579 | Lupinus angustifolius | exon |
| rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674 | rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674 | Lupinus angustifolius | exon |
| rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967 | rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967 | Lupinus angustifolius | exon |
| rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379 | rna-TanjilR_09800_La_Tanjil_v1.0-exon-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379 | Lupinus angustifolius | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type |
|---|
| rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762 | rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165639..20165762 | Lupinus angustifolius | CDS |
| rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080 | rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20165854..20166080 | Lupinus angustifolius | CDS |
| rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425 | rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166326..20166425 | Lupinus angustifolius | CDS |
| rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579 | rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20166502..20166579 | Lupinus angustifolius | CDS |
| rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674 | rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167565..20167674 | Lupinus angustifolius | CDS |
| rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967 | rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20167898..20167967 | Lupinus angustifolius | CDS |
| rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379 | rna-TanjilR_09800_La_Tanjil_v1.0-CDS-Chr_LG15-CM007375.1_La_Tanjil_v1.0-1579734366:20168051..20168379 | Lupinus angustifolius | CDS |
Homology
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| IPR032008 | Domain of unknown function DUF4792 | PFAM | PF16040 | DUF4792 | coord: 87..155
e-value: 2.6E-15
score: 56.1 |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type | GENE3D | 3.30.40.10 | | coord: 290..345
e-value: 2.8E-11
score: 44.7 |
| None | No IPR available | PFAM | PF13920 | zf-C3HC4_3 | coord: 316..345
e-value: 2.9E-10
score: 39.8 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 285..309 |
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800; organism=Lupinus angustifolius; type=mRNA; length=2741bp
ATGATACGAGCCATGCACACGACACAGTGGCGGCTACCCCATACCCCACC
ATCATCTCAGCCATGCCACCAGTTTTGGCCCAACATGCTGTCTTCTCTCA
CCGTTTGGATTTTTGGCACGTTATGTAAATTTTCATCTTTTGTTATTGTA
ACCCCTCCTtctattcatttctttttctaaaCCATTGCTCCTATTATTTC
TTTGTTGTTTTGCAGTTTCAGCTACTCTCAGATATGGGCATTATGGAGAT
TCTCATCTTCTGCTTGGGCCTACCTCATCGCGTTTGATCAAGACAAGTTC
TATTTTTGTTAAGCAAATTCAAGtatcaaacaagtttaataaTCAAGTTA
CACTTCATGCTTTCAATCAGAAGCCTCACTTAAGCTCCCAAACAAATTGG
ACTTCCTCAAATTTCTACCTTGTTGCACCACATAGTTGCAAGGTAACTTT
ATCTATCATAGGCATAAATTTAATCTGTTTAGGCTATCTCATAAATATCC
AAGTTTTAGAGCATGATACCAAATTAAATTATAGACAAAATAATTAGAAA
AGATAtagagattaatattttttcaatgaacatgatttatgttaaaatat
attgtttgattAGTTAACCAATCTTAGATTAAGGTTTTGTTACTGTATCA
CATTTATAAAGctgttcataaaaaatttctcGTGCAGGGAATTTCTGTGT
GGTTAAATAAAGGCTCCACCATCCGTATGATGTGGAAATCACGTTCTAGG
AAGAGTTTGAAACAGGTTCATGGGATTGTGGTCAAAggttttctcttctt
cttgttcttttcCCGAGTAAAGTTTTTAGGGTTGTTTCATGAAAGATATG
TTATTGTTCATAGGAGAAAGGAACTTCGAAAAACTGCAGCCTAAACAAAC
AAGATTCACCtatccaattttagttcatgaGACTGCTCGAGGTAATTGAT
GGCAAAAAATTACTCCCATGGGGAAAGTGCATTGACAATagttttgaaac
tttgaatgcttgtcatgttatatatatgtctAGCTATAAATGACATTGTT
TCGTGAACATCAAAATAGTGACACATGCATTGTCCTTTAGCTTTTTTCTA
TGTATTCGTGTATGTTGGACCAAAACCAAAAGCACAAGTGAGATACTACG
TCTTGAacaaaaaccttaagacattagtttcatgagcATTTCCTACTTGT
AAATTCTTTCACTTATTCCTGCATATttaatgtgggacttcacaattgaa
taaacccaatagtgtacacttgaataaacccaacaacaatgtgtatgaag
aaaaaataaatgtaatagaCTTAGTTAACATAActgtataaaatattaat
tacactAAAATAGTCTTTTActagtgtatgatttttatggAATATATCCA
ATTATCTCAGAGATTCTTTTGTTATCTAAAAATGAGTTTTATaaaggaaa
ttgaatattttggaaaaatcttctctctcttttttctttcctcACTTATG
TTCCACTTGtccatcttcatttttttttcatgtttattaTTCTTAGCTCT
ATAATGTtctaaattcaaattaaaaatcaaaattttatcaATTAGAAAGG
GGACTTTGGtgataatatactatatttttgtttctacaaaaaaaaaatac
tatatttctgtaaaatcaaaccaaattatATGTTGAAAGGTAAAATtgac
aaatattaaaaagaattaaagtTACACATTTTTCATTGGAAATGAAACCT
AAAAACAATGTCAAGGATATAAATAGTATTTTAACCAATTAATTATTctc
tcttttaaaaaatttggtTTCCAATTCTATTCATCAACGTACACCAGATC
GATACATATGAGGAACATATCTGAACTTTTTGAAAGGGACAAGGTATTTG
TTTGATGTTGTGGACATTATTGCTAGGTAAAGAAGCTGAATACATGGTTG
AGGAAGATAATACATACAATATTGGGGTTCTAAACATGAATGCCAGGAAC
ATAATATTAACTATGAATGTTAATATTTCGGCAAAGGTATATGATATCAC
CAAAGCCAATAACATATGCTTTAGTGCAAATGGATCGTGCAGACTCAATT
TTATCTTCCCAAAAACGTATTACGTTATTCTTACAGCACCCAACAGCGTA
AGGCATTGCTAACCTTAGTTgacaaatatttcattatagACTTGTTTCTA
TTGATCTTCATTGAAGAAATGATCAACATTAATTGTTCTTGCAAATTGTA
TAATTGCAGCTAGATGGTGATGAATGGAATGTTGAAGTTTATTTTGTGTC
TCGTGCCCTAAGCTACTCATTACTTTTAGGTACACTGATcataatttatt
gttttagtttagttatgttttatactaaataataaatatgcttcattttt
ttcaatttctagGATGTACCATGATTGTTATTTATCTGATAATGAAAGTC
CTTAGAGTCTGTGATGGTAATGAAGGAGATACAAATGAGATAATAGCCAT
CACAAATAGAACACGTAATAGTGTTGCAACAACTCAAACTGAAATTGAGC
CATTTGGGGTGTCAAATCGATCATCATATGGaacaaatgaagaagatgat
gaagaatctGAAGTGTCAAATAGCTCTTCAGATGAGTTATATGATGGAAA
GTTATGTGTCATTTGTTATGATGAACAACGCAACAGTTTCTTTGTTCCTT
GTGGACATTTTGCAACTTGCTATGATTGTTCACAGAGGTAA back to topprotein sequence of rna-TanjilR_09800_La_Tanjil_v1.0 >rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=345bp
MIRAMHTTQWRLPHTPPSSQPCHQFWPNMLSSLTVWIFGTLFSATLRYGH
YGDSHLLLGPTSSRLIKTSSIFVKQIQVSNKFNNQVTLHAFNQKPHLSSQ
TNWTSSNFYLVAPHSCKGISVWLNKGSTIRMMWKSRSRKSLKQVHGIVVK
GERNFEKLQPKQTRFTYPILVHETARGKEAEYMVEEDNTYNIGVLNMNAR
NIILTMNVNISAKLDGDEWNVEVYFVSRALSYSLLLGCTMIVIYLIMKVL
RVCDGNEGDTNEIIAITNRTRNSVATTQTEIEPFGVSNRSSYGTNEEDDE
ESEVSNSSSDELYDGKLCVICYDEQRNSFFVPCGHFATCYDCSQR back to topmRNA from alignment at Chr_LG15-CM007375.1:20165639..20168379+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800; organism=Lupinus angustifolius; type=mRNA; length=2741bp; location=Sequence derived from: Chr_LG15-CM007375.1:20165639..20168379+ (Lupinus angustifolius
ATGATACGAGCCATGCACACGACACAGTGGCGGCTACCCCATACCCCACC
ATCATCTCAGCCATGCCACCAGTTTTGGCCCAACATGCTGTCTTCTCTCA
CCGTTTGGATTTTTGGCACGTTATGTAAATTTTCATCTTTTGTTATTGTA
ACCCCTCCTtctattcatttctttttctaaaCCATTGCTCCTATTATTTC
TTTGTTGTTTTGCAGTTTCAGCTACTCTCAGATATGGGCATTATGGAGAT
TCTCATCTTCTGCTTGGGCCTACCTCATCGCGTTTGATCAAGACAAGTTC
TATTTTTGTTAAGCAAATTCAAGtatcaaacaagtttaataaTCAAGTTA
CACTTCATGCTTTCAATCAGAAGCCTCACTTAAGCTCCCAAACAAATTGG
ACTTCCTCAAATTTCTACCTTGTTGCACCACATAGTTGCAAGGTAACTTT
ATCTATCATAGGCATAAATTTAATCTGTTTAGGCTATCTCATAAATATCC
AAGTTTTAGAGCATGATACCAAATTAAATTATAGACAAAATAATTAGAAA
AGATAtagagattaatattttttcaatgaacatgatttatgttaaaatat
attgtttgattAGTTAACCAATCTTAGATTAAGGTTTTGTTACTGTATCA
CATTTATAAAGctgttcataaaaaatttctcGTGCAGGGAATTTCTGTGT
GGTTAAATAAAGGCTCCACCATCCGTATGATGTGGAAATCACGTTCTAGG
AAGAGTTTGAAACAGGTTCATGGGATTGTGGTCAAAggttttctcttctt
cttgttcttttcCCGAGTAAAGTTTTTAGGGTTGTTTCATGAAAGATATG
TTATTGTTCATAGGAGAAAGGAACTTCGAAAAACTGCAGCCTAAACAAAC
AAGATTCACCtatccaattttagttcatgaGACTGCTCGAGGTAATTGAT
GGCAAAAAATTACTCCCATGGGGAAAGTGCATTGACAATagttttgaaac
tttgaatgcttgtcatgttatatatatgtctAGCTATAAATGACATTGTT
TCGTGAACATCAAAATAGTGACACATGCATTGTCCTTTAGCTTTTTTCTA
TGTATTCGTGTATGTTGGACCAAAACCAAAAGCACAAGTGAGATACTACG
TCTTGAacaaaaaccttaagacattagtttcatgagcATTTCCTACTTGT
AAATTCTTTCACTTATTCCTGCATATttaatgtgggacttcacaattgaa
taaacccaatagtgtacacttgaataaacccaacaacaatgtgtatgaag
aaaaaataaatgtaatagaCTTAGTTAACATAActgtataaaatattaat
tacactAAAATAGTCTTTTActagtgtatgatttttatggAATATATCCA
ATTATCTCAGAGATTCTTTTGTTATCTAAAAATGAGTTTTATaaaggaaa
ttgaatattttggaaaaatcttctctctcttttttctttcctcACTTATG
TTCCACTTGtccatcttcatttttttttcatgtttattaTTCTTAGCTCT
ATAATGTtctaaattcaaattaaaaatcaaaattttatcaATTAGAAAGG
GGACTTTGGtgataatatactatatttttgtttctacaaaaaaaaaatac
tatatttctgtaaaatcaaaccaaattatATGTTGAAAGGTAAAATtgac
aaatattaaaaagaattaaagtTACACATTTTTCATTGGAAATGAAACCT
AAAAACAATGTCAAGGATATAAATAGTATTTTAACCAATTAATTATTctc
tcttttaaaaaatttggtTTCCAATTCTATTCATCAACGTACACCAGATC
GATACATATGAGGAACATATCTGAACTTTTTGAAAGGGACAAGGTATTTG
TTTGATGTTGTGGACATTATTGCTAGGTAAAGAAGCTGAATACATGGTTG
AGGAAGATAATACATACAATATTGGGGTTCTAAACATGAATGCCAGGAAC
ATAATATTAACTATGAATGTTAATATTTCGGCAAAGGTATATGATATCAC
CAAAGCCAATAACATATGCTTTAGTGCAAATGGATCGTGCAGACTCAATT
TTATCTTCCCAAAAACGTATTACGTTATTCTTACAGCACCCAACAGCGTA
AGGCATTGCTAACCTTAGTTgacaaatatttcattatagACTTGTTTCTA
TTGATCTTCATTGAAGAAATGATCAACATTAATTGTTCTTGCAAATTGTA
TAATTGCAGCTAGATGGTGATGAATGGAATGTTGAAGTTTATTTTGTGTC
TCGTGCCCTAAGCTACTCATTACTTTTAGGTACACTGATcataatttatt
gttttagtttagttatgttttatactaaataataaatatgcttcattttt
ttcaatttctagGATGTACCATGATTGTTATTTATCTGATAATGAAAGTC
CTTAGAGTCTGTGATGGTAATGAAGGAGATACAAATGAGATAATAGCCAT
CACAAATAGAACACGTAATAGTGTTGCAACAACTCAAACTGAAATTGAGC
CATTTGGGGTGTCAAATCGATCATCATATGGaacaaatgaagaagatgat
gaagaatctGAAGTGTCAAATAGCTCTTCAGATGAGTTATATGATGGAAA
GTTATGTGTCATTTGTTATGATGAACAACGCAACAGTTTCTTTGTTCCTT
GTGGACATTTTGCAACTTGCTATGATTGTTCACAGAGGTAA back to topCoding sequence (CDS) from alignment at Chr_LG15-CM007375.1:20165639..20168379+ >rna-TanjilR_09800_La_Tanjil_v1.0 ID=rna-TanjilR_09800_La_Tanjil_v1.0; Name=rna-TanjilR_09800; organism=Lupinus angustifolius; type=CDS; length=1038bp; location=Sequence derived from: Chr_LG15-CM007375.1:20165639..20168379+ (Lupinus angustifolius
ATGATACGAGCCATGCACACGACACAGTGGCGGCTACCCCATACCCCACC
ATCATCTCAGCCATGCCACCAGTTTTGGCCCAACATGCTGTCTTCTCTCA
CCGTTTGGATTTTTGGCACGTTATTTTCAGCTACTCTCAGATATGGGCAT
TATGGAGATTCTCATCTTCTGCTTGGGCCTACCTCATCGCGTTTGATCAA
GACAAGTTCTATTTTTGTTAAGCAAATTCAAGtatcaaacaagtttaata
aTCAAGTTACACTTCATGCTTTCAATCAGAAGCCTCACTTAAGCTCCCAA
ACAAATTGGACTTCCTCAAATTTCTACCTTGTTGCACCACATAGTTGCAA
GGGAATTTCTGTGTGGTTAAATAAAGGCTCCACCATCCGTATGATGTGGA
AATCACGTTCTAGGAAGAGTTTGAAACAGGTTCATGGGATTGTGGTCAAA
gGAGAAAGGAACTTCGAAAAACTGCAGCCTAAACAAACAAGATTCACCta
tccaattttagttcatgaGACTGCTCGAGGTAAAGAAGCTGAATACATGG
TTGAGGAAGATAATACATACAATATTGGGGTTCTAAACATGAATGCCAGG
AACATAATATTAACTATGAATGTTAATATTTCGGCAAAGCTAGATGGTGA
TGAATGGAATGTTGAAGTTTATTTTGTGTCTCGTGCCCTAAGCTACTCAT
TACTTTTAGGATGTACCATGATTGTTATTTATCTGATAATGAAAGTCCTT
AGAGTCTGTGATGGTAATGAAGGAGATACAAATGAGATAATAGCCATCAC
AAATAGAACACGTAATAGTGTTGCAACAACTCAAACTGAAATTGAGCCAT
TTGGGGTGTCAAATCGATCATCATATGGaacaaatgaagaagatgatgaa
gaatctGAAGTGTCAAATAGCTCTTCAGATGAGTTATATGATGGAAAGTT
ATGTGTCATTTGTTATGATGAACAACGCAACAGTTTCTTTGTTCCTTGTG
GACATTTTGCAACTTGCTATGATTGTTCACAGAGGTAA back to top
Annotated Terms
The
following terms have been associated with
this mRNA:
|
