rna-TanjilR_06193
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Transcript Overview
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Orthologs
Syntenic blocks Orthologs Gene/transcripts from the same species that appear to represent the same gene
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Homology
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: AP2_ARATH (Floral homeotic protein APETALA 2 OS=Arabidopsis thaliana OX=3702 GN=AP2 PE=1 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 5.481e-31 Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 3
Query: 1224 MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKY 1373
M+NLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKY
Sbjct: 198 MTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKY 247 HSP 2 Score: 49.6766 bits (117), Expect = 5.481e-31 Identity = 20/25 (80.00%), Postives = 25/25 (100.00%), Query Frame = 2
Query: 1043 IKFRGVEADINFNIEDYEEDLKQVS 1117
IKFRGVEADINFNI+DY++DLKQ++
Sbjct: 175 IKFRGVEADINFNIDDYDDDLKQMT 199 HSP 3 Score: 99.7525 bits (247), Expect = 1.853e-21 Identity = 89/178 (50.00%), Postives = 101/178 (56.74%), Query Frame = 1
Query: 1 MWDLNDSPDQR----------YDXXXXXXXXXXXXXXXAVVIEDDGSDEELKKRSSKIFGFSVTHXXXXXXXXESMDSDNLPVTQQFFXXXXXXXXXXXXGDGGSSSNFPRAHWVGVKFCQSE---GLGGGKS-------VEMSQPMKKXXXXXXXXXXQYRGVTFYRRTGRWESHIW 474
MWDLND+P Q Y + K VGS SNSSSSAVVIED D+EL + + +N VT QFFP + GG +S FPRAHW GVKFCQS+ G GK+ VE +QP+KKSRRGPRSRSSQYRGVTFYRRTGRWESHIW
Sbjct: 1 MWDLNDAPHQTQREEESEEFCYSSPSKRVGSFSNSSSSAVVIEDGSDDDELNR----------------------VRPNNPLVTHQFFPEMDS-------NGGGVASGFPRAHWFGVKFCQSDLATGSSAGKATNVAAAVVEPAQPLKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW 149 HSP 4 Score: 26.5646 bits (57), Expect = 1.853e-21 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query: 593 DCGKQVYLGKY 625
DCGKQVYLG +
Sbjct: 150 DCGKQVYLGGF 160 HSP 5 Score: 70.4774 bits (171), Expect = 2.480e-11 Identity = 41/87 (47.13%), Postives = 44/87 (50.57%), Query Frame = 2
Query: 1511 RYVYLGLFDTEVEAARYLLYLRFSVCYFPFQFATLPTLQNVPKNINGVRVLKLVTSYRAYDKAAIKCNGKEAVTNFDPSIYDNELNS 1771
+YVYLGLFDTEVEAAR AYDKAAIKCNGK+AVTNFDPSIYD ELN+
Sbjct: 246 KYVYLGLFDTEVEAAR------------------------------------------AYDKAAIKCNGKDAVTNFDPSIYDEELNA 290
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: TOE3_ARATH (AP2-like ethylene-responsive transcription factor TOE3 OS=Arabidopsis thaliana OX=3702 GN=TOE3 PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 4.937e-27 Identity = 45/50 (90.00%), Postives = 48/50 (96.00%), Query Frame = 3
Query: 1224 MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKY 1373
M NLTKEEF+HVLRRQSTGFPRGSSKYRGVTLHKCGRWE+R+GQFL KKY
Sbjct: 163 MGNLTKEEFMHVLRRQSTGFPRGSSKYRGVTLHKCGRWESRLGQFLNKKY 212 HSP 2 Score: 44.669 bits (104), Expect = 4.937e-27 Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 2
Query: 1043 IKFRGVEADINFNIEDYEEDLKQVSH 1120
IKFRGV+ADINF+IEDY +DLKQ+ +
Sbjct: 140 IKFRGVDADINFDIEDYLDDLKQMGN 165 HSP 3 Score: 58.5362 bits (140), Expect = 2.412e-9 Identity = 48/91 (52.75%), Postives = 53/91 (58.24%), Query Frame = 1
Query: 211 LPVTQQFFXXXXXXXXXXXXGDGGSSSNFPRAHWVG---VKFCQSEGLGGGKSVEMSQPMKKXXXXXXXXXXQYRGVTFYRRTGRWESHIW 474
LPVT+ FFP + S P W G V G G + E+S P+KKSRRGPRSRSSQYRGVTFYRRTGRWESHIW
Sbjct: 39 LPVTRNFFP---------------AQSMEPGVRWSGFNSVGKSDPSGSGRPEEPEISPPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIW 114 HSP 4 Score: 26.5646 bits (57), Expect = 2.412e-9 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query: 593 DCGKQVYLGKY 625
DCGKQVYLG +
Sbjct: 115 DCGKQVYLGGF 125 HSP 5 Score: 62.3882 bits (150), Expect = 7.505e-9 Identity = 35/84 (41.67%), Postives = 40/84 (47.62%), Query Frame = 2
Query: 1511 RYVYLGLFDTEVEAARYLLYLRFSVCYFPFQFATLPTLQNVPKNINGVRVLKLVTSYRAYDKAAIKCNGKEAVTNFDPSIYDNE 1762
+YVYLGLFDTE+EAAR AYDKAAIKCNGK+AVTNFDP +Y+ E
Sbjct: 211 KYVYLGLFDTEIEAAR------------------------------------------AYDKAAIKCNGKDAVTNFDPKVYEEE 252
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: RAP27_ARATH (Ethylene-responsive transcription factor RAP2-7 OS=Arabidopsis thaliana OX=3702 GN=RAP2-7 PE=2 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.168e-20 Identity = 48/68 (70.59%), Postives = 55/68 (80.88%), Query Frame = 3
Query: 1167 KLHFFLKYYKRKMFYLCE*MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKK 1370
++F L Y+ M + + NL+KEEFVH+LRRQSTGF RGSSKYRGVTLHKCGRWEARMGQFLGKK
Sbjct: 205 DINFTLGDYEEDM----KQVQNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQFLGKK 268
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: WRI1_ARATH (Ethylene-responsive transcription factor WRI1 OS=Arabidopsis thaliana OX=3702 GN=WRI1 PE=1 SV=1) HSP 1 Score: 64.3142 bits (155), Expect = 2.330e-9 Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 3
Query: 1170 LHFFLKYYKRKMFYLCE*MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKY 1373
L+F + Y +++ E M +TKEE++ LRRQS+GF RG SKYRGV H GRWEAR+G+ G KY
Sbjct: 128 LNFPAETYTKEL----EEMQRVTKEEYLASLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKY 192
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: AIL1_ARATH (AP2-like ethylene-responsive transcription factor AIL1 OS=Arabidopsis thaliana OX=3702 GN=AIL1 PE=2 SV=1) HSP 1 Score: 63.5438 bits (153), Expect = 4.118e-9 Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 3
Query: 1170 LHFFLKYYKRKMFYLCE*MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKK 1370
L+F L Y++++ E ++N+ ++EFV +LRR S+GF RG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 286 LNFPLSNYEKEI----EELNNMNRQEFVAMLRRNSSGFSRGASVYRGVTRHHQHGRWQARIGRVAGNK 349
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: TOE2_ARATH (AP2-like ethylene-responsive transcription factor TOE2 OS=Arabidopsis thaliana OX=3702 GN=TOE2 PE=1 SV=1) HSP 1 Score: 55.8398 bits (133), Expect = 1.011e-8 Identity = 33/35 (94.29%), Postives = 35/35 (100.00%), Query Frame = 1
Query: 370 SQPMKKXXXXXXXXXXQYRGVTFYRRTGRWESHIW 474
SQP+KKSRRGPRS+SSQYRGVTFYRRTGRWESHIW
Sbjct: 144 SQPVKKSRRGPRSKSSQYRGVTFYRRTGRWESHIW 178 HSP 2 Score: 27.335 bits (59), Expect = 1.011e-8 Identity = 9/11 (81.82%), Postives = 10/11 (90.91%), Query Frame = 2
Query: 593 DCGKQVYLGKY 625
DCGKQVYLG +
Sbjct: 179 DCGKQVYLGGF 189 HSP 3 Score: 60.4622 bits (145), Expect = 4.572e-8 Identity = 30/66 (45.45%), Postives = 43/66 (65.15%), Query Frame = 3
Query: 1167 KLHFFLKYYKRKMFYLCE*MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLG 1364
++F + Y+ + + M+NL+KEE V VLRRQS+GF R +S+Y+GV L K G W A+M Q G
Sbjct: 212 DINFVIGDYEEDL----KQMANLSKEEVVQVLRRQSSGFSRNNSRYQGVALQKIGGWGAQMEQLHG 273
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: CRL5_ORYSJ (AP2-like ethylene-responsive transcription factor CRL5 OS=Oryza sativa subsp. japonica OX=39947 GN=CRL5 PE=2 SV=1) HSP 1 Score: 62.3882 bits (150), Expect = 1.482e-8 Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 3
Query: 1170 LHFFLKYYKRKMFYLCE*MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKK 1370
++F L+ Y+ ++ E M N+T++E+V LRR+S+GF RG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 348 INFPLEDYQEEL----EEMKNMTRQEYVAHLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVSGNK 411
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: PLET2_ARATH (AP2-like ethylene-responsive transcription factor PLT2 OS=Arabidopsis thaliana OX=3702 GN=PLT2 PE=2 SV=1) HSP 1 Score: 62.003 bits (149), Expect = 1.565e-8 Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 3
Query: 1173 HFFLKYYKRKMFYLCE*MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVT-LHKCGRWEARMGQFLGKK 1370
+F + Y++++ E M N+T++EFV +RR+S+GF RG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 254 NFPITNYEKEV----EEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNK 316
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: AIL7_ARATH (AP2-like ethylene-responsive transcription factor AIL7 OS=Arabidopsis thaliana OX=3702 GN=AIL7 PE=2 SV=2) HSP 1 Score: 60.8474 bits (146), Expect = 3.433e-8 Identity = 31/67 (46.27%), Postives = 48/67 (71.64%), Query Frame = 3
Query: 1173 HFFLKYYKRKMFYLCE*MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKK 1370
+F + Y +++ E M+++TK+EF+ LRR+S+GF RG+S YRGVT H+ GRW+AR+G+ G K
Sbjct: 295 NFPVSSYSKEL----EEMNHMTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNK 357
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Match: AP2L1_ARATH (AP2-like ethylene-responsive transcription factor At1g16060 OS=Arabidopsis thaliana OX=3702 GN=At1g16060 PE=2 SV=1) HSP 1 Score: 59.6918 bits (143), Expect = 4.763e-8 Identity = 29/51 (56.86%), Postives = 37/51 (72.55%), Query Frame = 3
Query: 1224 MSNLTKEEFVHVLRRQSTGFPRGSSKYRGVTL-HKCGRWEARMGQFLGKKY 1373
M + +KEE++ LRR+S+GF RG SKYRGV H GRWEAR+G+ G KY
Sbjct: 135 MESQSKEEYIGSLRRKSSGFSRGVSKYRGVAKHHHNGRWEARIGRVFGNKY 185 The following BLAST results are available for this feature:
BLAST of rna-TanjilR_06193 vs. DB:Swiss
Analysis Date: 2020-01-28 (BLAST: L. angustifolius cv. Tanjil genome v1.0 vs. Swissprot) Total hits: 10
InterPro
Analysis Name: InterProScan: L. angustifolius cv. Tanjil genome v1.0
Date Performed: 2020-01-28
Sequences
The
following sequences are available for this feature:
mRNA sequence >rna-TanjilR_06193_La_Tanjil_v1.0 ID=rna-TanjilR_06193_La_Tanjil_v1.0; Name=rna-TanjilR_06193; organism=Lupinus angustifolius; type=mRNA; length=2620bpback to top protein sequence of rna-TanjilR_06193_La_Tanjil_v1.0 >rna-TanjilR_06193_La_Tanjil_v1.0 ID=rna-TanjilR_06193_La_Tanjil_v1.0; Name=rna-TanjilR_06193_La_Tanjil_v1.0; organism=Lupinus angustifolius; type=polypeptide; length=490bpback to top mRNA from alignment at Chr_LG17-CM007377.1:2326865..2329484- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below.>rna-TanjilR_06193_La_Tanjil_v1.0 ID=rna-TanjilR_06193_La_Tanjil_v1.0; Name=rna-TanjilR_06193; organism=Lupinus angustifolius; type=mRNA; length=2620bp; location=Sequence derived from: Chr_LG17-CM007377.1:2326865..2329484- (Lupinus angustifoliusback to top Coding sequence (CDS) from alignment at Chr_LG17-CM007377.1:2326865..2329484- >rna-TanjilR_06193_La_Tanjil_v1.0 ID=rna-TanjilR_06193_La_Tanjil_v1.0; Name=rna-TanjilR_06193; organism=Lupinus angustifolius; type=CDS; length=1473bp; location=Sequence derived from: Chr_LG17-CM007377.1:2326865..2329484- (Lupinus angustifoliusback to top Annotated Terms
The
following terms have been associated with
this mRNA:
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